Wall clock time and date at job start Mon Mar 30 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48498 * 109.47457 * 264.99138 * 3 2 1 5 5 H 1.48501 * 109.47210 * 24.99381 * 3 2 1 6 6 H 1.48498 * 109.47395 * 144.99000 * 3 2 1 7 7 C 1.37878 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99519 * 190.19518 * 7 2 1 9 9 C 1.50696 * 120.00466 * 10.19230 * 7 2 1 10 10 O 1.42901 * 113.37924 * 52.39349 * 9 7 2 11 11 C 1.53511 * 114.17384 * 185.47496 * 9 7 2 12 12 N 1.47479 * 87.93139 * 139.67235 * 11 9 7 13 13 C 1.46899 * 110.99950 * 221.29298 * 12 11 9 14 14 C 1.52993 * 109.47082 * 169.99860 * 13 12 11 15 15 H 1.09000 * 109.47456 * 60.00568 * 14 13 12 16 16 O 1.42902 * 109.47728 * 300.00552 * 14 13 12 17 17 C 1.52997 * 109.47282 * 180.02562 * 14 13 12 18 18 C 1.52999 * 109.47097 * 300.00426 * 17 14 13 19 19 C 1.53002 * 109.47400 * 179.97438 * 18 17 14 20 20 C 1.53002 * 109.47193 * 59.99551 * 19 18 17 21 21 C 1.52999 * 109.47314 * 300.00502 * 20 19 18 22 22 C 1.52997 * 109.47097 * 59.99584 * 21 20 19 23 23 C 1.47477 * 87.83529 * 332.99049 * 12 11 9 24 24 H 0.96997 * 120.00195 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00502 * 317.08814 * 10 9 7 26 26 H 1.09001 * 113.47670 * 24.90009 * 11 9 7 27 27 H 1.09010 * 113.47409 * 254.44046 * 11 9 7 28 28 H 1.08993 * 109.47347 * 290.00219 * 13 12 11 29 29 H 1.09007 * 109.47033 * 50.00278 * 13 12 11 30 30 H 0.96704 * 113.99427 * 300.00498 * 16 14 13 31 31 H 1.09007 * 109.47147 * 60.00226 * 17 14 13 32 32 H 1.08997 * 109.46981 * 299.99741 * 18 17 14 33 33 H 1.08994 * 109.47353 * 59.99721 * 18 17 14 34 34 H 1.09007 * 109.47029 * 299.99914 * 19 18 17 35 35 H 1.08993 * 109.47336 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.46908 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.46968 * 60.00352 * 20 19 18 38 38 H 1.09007 * 109.46959 * 299.99668 * 21 20 19 39 39 H 1.08994 * 109.47353 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47178 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.46994 * 60.00267 * 22 21 20 42 42 H 1.09004 * 113.47716 * 141.78008 * 23 12 11 43 43 H 1.09003 * 113.47370 * 272.24202 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3977 2.6809 0.5916 6 1 3.4897 1.4730 0.8032 7 6 2.0044 -1.1941 0.0005 8 1 3.0717 -1.2013 0.1661 9 6 1.2689 -2.4890 -0.2298 10 8 0.4636 -2.4815 -1.4103 11 6 2.1394 -3.7434 -0.0707 12 7 0.9983 -4.3838 0.6097 13 6 1.4475 -5.1615 1.7721 14 6 0.2329 -5.6014 2.5917 15 1 -0.4195 -6.2173 1.9727 16 8 -0.4837 -4.4484 3.0380 17 6 0.7007 -6.4109 3.8027 18 6 1.4681 -7.6454 3.3254 19 6 1.9366 -8.4547 4.5364 20 6 0.7222 -8.8946 5.3566 21 6 -0.0452 -7.6600 5.8339 22 6 -0.5136 -6.8509 4.6229 23 6 0.5554 -3.0365 1.0142 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0373 -1.6645 -1.5396 26 1 3.0029 -3.5933 0.5773 27 1 2.3997 -4.2143 -1.0187 28 1 1.9940 -6.0410 1.4317 29 1 2.0999 -4.5456 2.3913 30 1 0.0365 -3.8535 3.5955 31 1 1.3528 -5.7946 4.4218 32 1 0.8161 -8.2616 2.7064 33 1 2.3335 -7.3320 2.7415 34 1 2.5888 -7.8382 5.1551 35 1 2.4829 -9.3343 4.1963 36 1 1.0560 -9.4707 6.2196 37 1 0.0700 -9.5110 4.7380 38 1 0.6070 -7.0435 6.4526 39 1 -0.9106 -7.9734 6.4178 40 1 -1.0599 -5.9711 4.9630 41 1 -1.1658 -7.4673 4.0043 42 1 -0.5267 -2.9084 0.9859 43 1 0.9962 -2.6979 1.9519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332442372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:23 Heat of formation + Delta-G solvation = -90.351331 kcal Electronic energy + Delta-G solvation = -21756.854507 eV Core-core repulsion = 18608.921421 eV Total energy + Delta-G solvation = -3147.933086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.73576 -38.57612 -36.22167 -34.08739 -32.12121 -31.87088 -30.78599 -29.06798 -26.30703 -24.72715 -24.16422 -22.76285 -21.70410 -20.66545 -19.89576 -18.56607 -17.24353 -16.21938 -15.66428 -15.37152 -14.93715 -14.74855 -14.35477 -14.12744 -14.01365 -13.91628 -13.48597 -12.94099 -12.39796 -12.31504 -12.23679 -12.05877 -11.86689 -11.56611 -11.35072 -11.21173 -11.05835 -10.86201 -10.83180 -10.67431 -10.47000 -10.42961 -10.35285 -9.99173 -9.92569 -9.25345 -9.04815 -8.72132 -8.09056 -7.76373 -6.22497 -4.31211 3.21950 3.29421 3.31289 4.27894 4.43445 4.53643 4.64803 4.82906 4.91818 4.99055 5.13818 5.19598 5.33366 5.38212 5.43299 5.44558 5.51384 5.57111 5.62912 5.79734 5.88416 5.94651 5.99155 5.99708 6.06216 6.07837 6.09493 6.20917 6.26696 6.34874 6.42076 6.49105 6.57491 6.74316 7.24027 7.34241 7.44077 7.77244 7.98482 8.01389 8.13577 8.69734 9.37468 9.51947 10.82858 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.004100 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.214545 B = 6826.868724 C = 6990.299189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.240 3.760 10 O -0.566 6.566 11 C 0.002 3.998 12 N -0.470 5.470 13 C -0.014 4.014 14 C 0.120 3.880 15 H 0.098 0.902 16 O -0.549 6.549 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.109 4.109 23 C 0.009 3.991 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.368 0.632 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -13.112 10.269 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.199 3.801 10 O -0.373 6.373 11 C -0.127 4.127 12 N -0.192 5.192 13 C -0.143 4.143 14 C 0.060 3.940 15 H 0.116 0.884 16 O -0.353 6.353 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.120 4.120 24 H 0.078 0.922 25 H 0.232 0.768 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.215 0.785 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.984 -14.354 9.512 17.248 hybrid contribution 1.368 2.081 1.057 2.705 sum 2.352 -12.273 10.569 16.366 Atomic orbital electron populations 1.69804 1.05903 1.27624 1.49054 1.25057 0.94932 0.99454 0.93599 0.86541 0.79820 0.82725 0.78523 1.20241 1.21101 1.19877 1.21492 0.94927 0.91049 1.50633 0.91776 1.19450 0.87229 0.90691 0.82736 1.86071 1.63391 1.43886 1.43995 1.24086 0.93853 0.96354 0.98435 1.68934 1.20274 1.13283 1.16702 1.23367 0.96773 0.99560 0.94624 1.21876 0.93163 0.86534 0.92412 0.88370 1.86659 1.42079 1.35371 1.71235 1.21875 0.97273 0.97013 0.97393 1.21594 1.00022 0.96200 0.97457 1.21527 0.97456 0.99575 0.97032 1.21543 0.97234 0.97562 0.99381 1.21546 0.99624 0.96767 0.97768 1.21479 0.97080 0.99874 0.96188 1.24357 1.01596 0.86483 0.99543 0.92156 0.76824 0.92111 0.91423 0.90863 0.94753 0.78546 0.91324 0.91770 0.91555 0.92175 0.92206 0.92461 0.92094 0.92252 0.92281 0.91296 0.92091 0.90789 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 11.82 55.43 0.66 -23.33 16 2 C 0.07 1.93 5.21 -17.82 -0.09 1.84 16 3 Si 0.90 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.58 8.64 -34.44 -0.30 -14.87 16 8 H 0.06 1.69 7.84 -52.48 -0.41 1.28 16 9 C 0.24 6.18 1.40 -91.25 -0.13 6.05 16 10 O -0.57 -15.42 13.56 -35.23 -0.48 -15.90 16 11 C 0.00 0.04 7.12 -7.55 -0.05 -0.02 16 12 N -0.47 -10.01 6.41 -244.65 -1.57 -11.58 16 13 C -0.01 -0.23 4.32 -3.83 -0.02 -0.25 16 14 C 0.12 1.78 2.82 -26.74 -0.08 1.71 16 15 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 16 O -0.55 -9.13 10.58 -35.23 -0.37 -9.51 16 17 C -0.12 -1.35 1.96 -90.62 -0.18 -1.53 16 18 C -0.12 -1.21 4.85 -26.73 -0.13 -1.34 16 19 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 20 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.11 -1.19 5.06 -26.73 -0.14 -1.33 16 23 C 0.01 0.22 5.21 -7.56 -0.04 0.18 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 25 H 0.38 10.43 7.10 45.56 0.32 10.76 16 26 H 0.06 1.28 7.72 -51.93 -0.40 0.88 16 27 H 0.07 1.50 8.14 -51.92 -0.42 1.07 16 28 H 0.07 1.12 6.43 -51.93 -0.33 0.79 16 29 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 30 H 0.37 5.29 8.56 45.56 0.39 5.68 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.81 7.68 -51.93 -0.40 0.42 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.93 8.03 -51.93 -0.42 1.51 16 43 H 0.05 1.19 7.12 -51.93 -0.37 0.82 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -28.41 329.94 -9.57 -37.98 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.13 Total: 15.29 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.62 Total: -13.28 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.91 Total: -34.91 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.85 Total: -25.40 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.41 -9.57 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332442372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.373 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds