Wall clock time and date at job start Mon Mar 30 2020 01:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48498 * 109.47457 * 264.99138 * 3 2 1 5 5 H 1.48501 * 109.47210 * 24.99381 * 3 2 1 6 6 H 1.48498 * 109.47395 * 144.99000 * 3 2 1 7 7 C 1.37878 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99519 * 190.19518 * 7 2 1 9 9 C 1.50696 * 120.00466 * 10.19230 * 7 2 1 10 10 O 1.42901 * 113.37924 * 52.39349 * 9 7 2 11 11 C 1.53511 * 114.17384 * 185.47496 * 9 7 2 12 12 N 1.47479 * 87.93139 * 139.67235 * 11 9 7 13 13 C 1.46899 * 110.99950 * 221.29298 * 12 11 9 14 14 C 1.52993 * 109.47082 * 169.99860 * 13 12 11 15 15 H 1.09000 * 109.47456 * 60.00568 * 14 13 12 16 16 O 1.42902 * 109.47728 * 300.00552 * 14 13 12 17 17 C 1.52997 * 109.47282 * 180.02562 * 14 13 12 18 18 C 1.52999 * 109.47097 * 300.00426 * 17 14 13 19 19 C 1.53002 * 109.47400 * 179.97438 * 18 17 14 20 20 C 1.53002 * 109.47193 * 59.99551 * 19 18 17 21 21 C 1.52999 * 109.47314 * 300.00502 * 20 19 18 22 22 C 1.52997 * 109.47097 * 59.99584 * 21 20 19 23 23 C 1.47477 * 87.83529 * 332.99049 * 12 11 9 24 24 H 0.96997 * 120.00195 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00502 * 317.08814 * 10 9 7 26 26 H 1.09001 * 113.47670 * 24.90009 * 11 9 7 27 27 H 1.09010 * 113.47409 * 254.44046 * 11 9 7 28 28 H 1.08993 * 109.47347 * 290.00219 * 13 12 11 29 29 H 1.09007 * 109.47033 * 50.00278 * 13 12 11 30 30 H 0.96704 * 113.99427 * 300.00498 * 16 14 13 31 31 H 1.09007 * 109.47147 * 60.00226 * 17 14 13 32 32 H 1.08997 * 109.46981 * 299.99741 * 18 17 14 33 33 H 1.08994 * 109.47353 * 59.99721 * 18 17 14 34 34 H 1.09007 * 109.47029 * 299.99914 * 19 18 17 35 35 H 1.08993 * 109.47336 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.46908 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.46968 * 60.00352 * 20 19 18 38 38 H 1.09007 * 109.46959 * 299.99668 * 21 20 19 39 39 H 1.08994 * 109.47353 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47178 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.46994 * 60.00267 * 22 21 20 42 42 H 1.09004 * 113.47716 * 141.78008 * 23 12 11 43 43 H 1.09003 * 113.47370 * 272.24202 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3977 2.6809 0.5916 6 1 3.4897 1.4730 0.8032 7 6 2.0044 -1.1941 0.0005 8 1 3.0717 -1.2013 0.1661 9 6 1.2689 -2.4890 -0.2298 10 8 0.4636 -2.4815 -1.4103 11 6 2.1394 -3.7434 -0.0707 12 7 0.9983 -4.3838 0.6097 13 6 1.4475 -5.1615 1.7721 14 6 0.2329 -5.6014 2.5917 15 1 -0.4195 -6.2173 1.9727 16 8 -0.4837 -4.4484 3.0380 17 6 0.7007 -6.4109 3.8027 18 6 1.4681 -7.6454 3.3254 19 6 1.9366 -8.4547 4.5364 20 6 0.7222 -8.8946 5.3566 21 6 -0.0452 -7.6600 5.8339 22 6 -0.5136 -6.8509 4.6229 23 6 0.5554 -3.0365 1.0142 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0373 -1.6645 -1.5396 26 1 3.0029 -3.5933 0.5773 27 1 2.3997 -4.2143 -1.0187 28 1 1.9940 -6.0410 1.4317 29 1 2.0999 -4.5456 2.3913 30 1 0.0365 -3.8535 3.5955 31 1 1.3528 -5.7946 4.4218 32 1 0.8161 -8.2616 2.7064 33 1 2.3335 -7.3320 2.7415 34 1 2.5888 -7.8382 5.1551 35 1 2.4829 -9.3343 4.1963 36 1 1.0560 -9.4707 6.2196 37 1 0.0700 -9.5110 4.7380 38 1 0.6070 -7.0435 6.4526 39 1 -0.9106 -7.9734 6.4178 40 1 -1.0599 -5.9711 4.9630 41 1 -1.1658 -7.4673 4.0043 42 1 -0.5267 -2.9084 0.9859 43 1 0.9962 -2.6979 1.9519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332442372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:22 Heat of formation + Delta-G solvation = -112.558546 kcal Electronic energy + Delta-G solvation = -21757.817484 eV Core-core repulsion = 18608.921421 eV Total energy + Delta-G solvation = -3148.896063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23658 -39.82829 -37.45252 -35.98704 -34.18425 -32.97354 -31.59276 -30.52194 -28.05649 -26.57865 -25.60797 -23.74639 -22.87800 -21.85523 -20.76461 -20.43621 -19.21220 -17.47034 -17.16902 -16.95344 -16.42853 -16.23730 -15.73126 -15.57549 -15.26324 -14.95416 -14.70677 -14.27604 -13.92537 -13.72265 -13.62435 -13.49666 -13.15292 -13.09365 -12.79787 -12.60930 -12.38711 -12.31924 -12.24099 -11.99665 -11.86118 -11.74009 -11.48827 -11.29719 -10.96719 -10.84728 -10.75186 -10.45737 -9.97166 -9.58964 -8.23227 -6.39954 1.42305 1.45339 1.53717 2.38192 2.97107 3.15391 3.48165 3.63800 3.83261 3.92142 3.98643 4.09052 4.17274 4.24930 4.35110 4.41508 4.46059 4.54470 4.61486 4.62977 4.65380 4.68508 4.72543 4.83490 4.90792 4.96991 5.07827 5.19605 5.26600 5.30035 5.30920 5.35086 5.39872 5.43850 5.48558 5.52935 5.60339 5.72941 5.98135 6.40090 6.64436 6.81883 7.31948 7.39254 8.81482 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.004100 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.214545 B = 6826.868724 C = 6990.299189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.565 4.565 8 H 0.064 0.936 9 C 0.211 3.789 10 O -0.577 6.577 11 C 0.011 3.989 12 N -0.478 5.478 13 C -0.012 4.012 14 C 0.124 3.876 15 H 0.083 0.917 16 O -0.569 6.569 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.107 4.107 23 C 0.030 3.970 24 H 0.271 0.729 25 H 0.376 0.624 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.376 0.624 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -13.848 11.517 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.170 4.170 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.603 4.603 8 H 0.082 0.918 9 C 0.170 3.830 10 O -0.385 6.385 11 C -0.117 4.117 12 N -0.201 5.201 13 C -0.141 4.141 14 C 0.064 3.936 15 H 0.101 0.899 16 O -0.375 6.375 17 C -0.123 4.123 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.099 4.099 24 H 0.080 0.920 25 H 0.225 0.775 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.340 -15.109 10.769 18.701 hybrid contribution 0.915 2.274 0.657 2.537 sum 3.255 -12.836 11.425 17.490 Atomic orbital electron populations 1.69898 1.07146 1.28484 1.49261 1.25783 0.95677 1.02530 0.93003 0.85515 0.78662 0.78621 0.78484 1.20027 1.20717 1.19202 1.21734 0.95066 0.92087 1.51374 0.91790 1.19854 0.88291 0.91990 0.82882 1.86055 1.63694 1.43592 1.45149 1.23993 0.94070 0.94688 0.98987 1.68825 1.20225 1.12297 1.18725 1.23461 0.97800 0.99536 0.93300 1.21866 0.91986 0.86235 0.93465 0.89874 1.86631 1.43046 1.36262 1.71597 1.21739 0.97671 0.97074 0.95834 1.21595 0.99682 0.95741 0.98219 1.21515 0.97708 0.99765 0.96331 1.21549 0.96948 0.97275 0.99853 1.21524 1.00108 0.96838 0.96898 1.21447 0.96590 0.99610 0.96814 1.23994 0.99179 0.87977 0.98790 0.91973 0.77471 0.90599 0.91318 0.88910 0.94120 0.77607 0.90826 0.92022 0.91659 0.91894 0.91119 0.91063 0.92171 0.91943 0.91515 0.92463 0.92717 0.94006 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.74 11.82 21.45 0.25 -49.49 16 2 C 0.03 1.66 5.21 84.66 0.44 2.10 16 3 Si 0.96 41.51 29.55 68.60 2.03 43.54 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -30.32 8.64 25.60 0.22 -30.10 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 9 C 0.21 10.92 1.40 -11.20 -0.02 10.90 16 10 O -0.58 -32.17 13.56 -148.98 -2.02 -34.19 16 11 C 0.01 0.50 7.12 83.57 0.60 1.10 16 12 N -0.48 -20.22 6.41 -928.32 -5.95 -26.18 16 13 C -0.01 -0.39 4.32 86.30 0.37 -0.02 16 14 C 0.12 3.61 2.82 30.59 0.09 3.70 16 15 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 16 O -0.57 -19.02 10.58 -148.98 -1.58 -20.59 16 17 C -0.10 -2.26 1.96 -10.80 -0.02 -2.28 16 18 C -0.11 -2.18 4.85 30.59 0.15 -2.03 16 19 C -0.12 -1.80 5.92 30.60 0.18 -1.61 16 20 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 21 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 22 C -0.11 -2.23 5.06 30.59 0.15 -2.08 16 23 C 0.03 1.44 5.21 83.57 0.43 1.87 16 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.38 21.22 7.10 -74.06 -0.53 20.70 16 26 H 0.08 3.07 7.72 -2.39 -0.02 3.06 16 27 H 0.07 2.98 8.14 -2.38 -0.02 2.97 16 28 H 0.09 2.64 6.43 -2.39 -0.02 2.63 16 29 H 0.04 1.28 7.56 -2.38 -0.02 1.26 16 30 H 0.38 10.79 8.56 -74.05 -0.63 10.16 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.26 6.43 -2.39 -0.02 1.24 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.32 7.68 -2.39 -0.02 1.30 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 2.24 8.03 -2.38 -0.02 2.23 16 43 H 0.05 2.47 7.12 -2.39 -0.02 2.45 16 Total: -1.00 -60.12 329.94 -4.48 -64.60 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -0.17 Total: 44.08 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 2.96 Total: -21.77 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -5.70 Total: -75.66 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -3.60 Total: -54.78 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -60.12 -4.48 -64.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332442372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.962 kcal (2) G-P(sol) polarization free energy of solvation -60.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds