Wall clock time and date at job start Mon Mar 30 2020 00:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 115.54598 * 2 1 4 4 O 1.21280 * 119.99503 * 111.99898 * 3 2 1 5 5 N 1.34774 * 119.99951 * 291.98957 * 3 2 1 6 6 C 1.46927 * 120.62983 * 4.50127 * 5 3 2 7 7 C 1.52760 * 109.00428 * 233.57927 * 6 5 3 8 8 C 1.53042 * 109.38487 * 305.58624 * 7 6 5 9 9 C 1.53001 * 109.45710 * 181.26150 * 8 7 6 10 10 C 1.50700 * 109.47274 * 64.93624 * 9 8 7 11 11 H 1.07998 * 119.99755 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99866 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00106 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99721 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47329 * 120.00028 * 14 12 10 17 17 H 1.48503 * 109.46962 * 239.99942 * 14 12 10 18 18 C 1.53043 * 109.53580 * 61.24480 * 8 7 6 19 19 C 1.46927 * 120.62969 * 184.77247 * 5 3 2 20 20 C 1.53001 * 117.49910 * 145.70297 * 2 1 3 21 21 C 1.52995 * 117.49896 * 214.32730 * 2 1 3 22 22 H 1.09004 * 117.49894 * 145.00126 * 21 2 1 23 23 F 1.39892 * 117.50060 * 359.97438 * 21 2 1 24 24 H 1.08997 * 109.46813 * 211.33822 * 1 2 3 25 25 H 1.08998 * 109.46734 * 91.34110 * 1 2 3 26 26 H 1.08993 * 109.47100 * 331.33938 * 1 2 3 27 27 H 1.08999 * 109.58754 * 353.41301 * 6 5 3 28 28 H 1.08997 * 109.58471 * 113.84050 * 6 5 3 29 29 H 1.09000 * 109.56268 * 185.55441 * 7 6 5 30 30 H 1.09001 * 109.38872 * 65.51705 * 7 6 5 31 31 H 1.08996 * 109.46059 * 301.22131 * 8 7 6 32 32 H 1.09000 * 109.46939 * 184.93273 * 9 8 7 33 33 H 1.09000 * 109.47574 * 304.93215 * 9 8 7 34 34 H 0.97002 * 120.00021 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.49708 * 178.68476 * 18 8 7 36 36 H 1.08998 * 109.52174 * 58.59890 * 18 8 7 37 37 H 1.08995 * 109.58801 * 246.15843 * 19 5 3 38 38 H 1.09002 * 109.58570 * 6.58824 * 19 5 3 39 39 H 1.08995 * 117.50094 * 214.98451 * 20 2 1 40 40 H 1.08998 * 117.49810 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.7964 1.7371 0.9739 5 7 2.0762 2.1562 -1.0823 6 6 1.2520 1.7551 -2.2306 7 6 2.1010 1.8197 -3.4989 8 6 2.7201 3.2135 -3.6254 9 6 3.5453 3.2898 -4.9115 10 6 2.6333 3.1475 -6.1028 11 1 1.5714 3.0153 -5.9571 12 6 3.1547 3.1859 -7.3786 13 7 4.4477 3.3474 -7.5559 14 14 2.0243 3.0087 -8.8551 15 1 0.6244 2.8394 -8.3894 16 1 2.1212 4.2250 -9.7015 17 1 2.4288 1.8202 -9.6483 18 6 3.6261 3.4822 -2.4216 19 6 2.7900 3.4392 -1.1387 20 6 2.2365 -1.1212 0.7647 21 6 2.2365 -1.1207 -0.7653 22 1 3.1715 -0.8747 -1.2688 23 9 1.4341 -2.0674 -1.4110 24 1 -0.3633 -0.8777 0.5345 25 1 -0.3633 -0.0241 -1.0274 26 1 -0.3633 0.9017 0.4929 27 1 0.8927 0.7365 -2.0845 28 1 0.4044 2.4336 -2.3266 29 1 1.4743 1.6198 -4.3681 30 1 2.8934 1.0733 -3.4423 31 1 1.9277 3.9613 -3.6577 32 1 4.0569 4.2512 -4.9585 33 1 4.2814 2.4859 -4.9193 34 1 4.8146 3.3741 -8.4535 35 1 4.0849 4.4656 -2.5239 36 1 4.4045 2.7206 -2.3743 37 1 2.0703 4.2577 -1.1439 38 1 3.4450 3.5313 -0.2723 39 1 3.1715 -0.8755 1.2681 40 1 1.6113 -1.8590 1.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335652431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:55 Heat of formation + Delta-G solvation = -77.012656 kcal Electronic energy + Delta-G solvation = -21380.080953 eV Core-core repulsion = 18109.265970 eV Total energy + Delta-G solvation = -3270.814983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.81504 -40.40476 -37.71841 -36.37490 -34.03421 -32.16187 -30.90637 -28.96798 -28.11770 -25.13894 -23.29227 -22.80940 -22.55695 -21.14499 -19.64675 -18.52543 -17.39250 -16.49277 -16.32045 -16.05737 -15.07302 -14.98806 -14.56181 -14.45482 -14.06542 -13.77133 -13.55726 -13.09794 -12.99955 -12.80126 -12.53034 -12.46630 -12.27225 -12.08936 -11.83077 -11.22922 -11.03479 -10.81156 -10.75532 -10.57985 -10.48389 -10.20652 -10.14995 -9.76091 -9.58466 -9.30187 -8.99626 -8.43496 -8.37928 -6.02779 -4.04902 2.45094 2.90806 3.27611 3.28395 3.36608 3.39248 3.85067 4.20562 4.34051 4.42997 4.61547 4.78065 5.07780 5.28034 5.32335 5.37184 5.41911 5.42614 5.46953 5.48928 5.55376 5.64715 5.70348 5.82929 5.88675 5.97056 6.02655 6.31020 6.34491 6.46670 6.61709 6.91204 6.94556 7.06694 7.47124 7.63620 7.77429 7.96640 8.15414 8.38912 9.01767 9.59324 11.08499 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.004863 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.968055 B = 5756.223011 C = 6399.659586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.169 4.169 3 C 0.550 3.450 4 O -0.544 6.544 5 N -0.596 5.596 6 C 0.099 3.901 7 C -0.119 4.119 8 C -0.081 4.081 9 C 0.027 3.973 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.129 4.129 19 C 0.111 3.889 20 C -0.154 4.154 21 C 0.039 3.961 22 H 0.137 0.863 23 F -0.175 7.175 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 -6.613 14.375 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.172 4.172 3 C 0.337 3.663 4 O -0.422 6.422 5 N -0.328 5.328 6 C -0.023 4.023 7 C -0.157 4.157 8 C -0.100 4.100 9 C -0.010 4.010 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.167 4.167 19 C -0.010 4.010 20 C -0.192 4.192 21 C 0.002 3.998 22 H 0.154 0.846 23 F -0.155 7.155 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.066 -6.402 14.723 17.162 hybrid contribution -0.623 -0.123 -1.129 1.295 sum -6.689 -6.525 13.594 16.496 Atomic orbital electron populations 1.21346 0.89204 1.03097 1.03225 1.22192 0.97559 0.90313 1.07170 1.19300 0.79784 0.84652 0.82547 1.90675 1.43150 1.74695 1.33645 1.48112 1.47764 1.20297 1.16644 1.22011 0.93694 1.00595 0.86022 1.21830 0.99489 0.98686 0.95700 1.21201 0.97742 0.95341 0.95683 1.19127 0.94807 0.97174 0.89854 1.21264 0.93922 1.49359 0.90888 0.92543 1.25017 0.94917 0.95423 0.99074 1.69971 1.11278 1.50403 1.21803 0.86596 0.81059 0.77656 0.83045 1.19744 1.21091 1.21076 1.22036 0.98424 1.02219 0.94066 1.21722 0.95748 0.83880 0.99682 1.23816 1.03666 0.98413 0.93311 1.22257 0.94793 0.90378 0.92348 0.84556 1.92818 1.75204 1.64960 1.82558 0.91196 0.90718 0.91319 0.89962 0.91395 0.89549 0.92371 0.92280 0.96580 0.96649 0.93088 0.90980 0.92100 0.91617 0.89670 0.86400 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.80 37.16 0.33 -0.75 16 2 C -0.17 -1.94 1.35 -155.66 -0.21 -2.15 16 3 C 0.55 7.95 6.88 -10.98 -0.08 7.87 16 4 O -0.54 -9.43 16.20 5.56 0.09 -9.34 16 5 N -0.60 -8.48 2.98 -173.03 -0.52 -9.00 16 6 C 0.10 1.33 6.00 -3.93 -0.02 1.31 16 7 C -0.12 -1.99 5.17 -26.83 -0.14 -2.13 16 8 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 10 C -0.52 -13.77 8.39 -34.44 -0.29 -14.05 16 11 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 14 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 19 C 0.11 1.62 6.42 -3.71 -0.02 1.59 16 20 C -0.15 -1.54 9.69 -26.73 -0.26 -1.80 16 21 C 0.04 0.43 7.08 -26.73 -0.19 0.24 16 22 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 23 F -0.18 -2.14 17.14 2.25 0.04 -2.10 16 24 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 25 H 0.07 0.70 6.64 -51.93 -0.34 0.35 16 26 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 27 H 0.08 0.99 4.20 -51.93 -0.22 0.77 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.26 7.03 -51.93 -0.37 0.90 16 39 H 0.12 1.19 8.04 -51.93 -0.42 0.78 16 40 H 0.11 0.93 8.03 -51.93 -0.42 0.51 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -30.54 323.01 -7.50 -38.04 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.26 Total: -1.13 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.44 Total: -11.81 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.22 Total: -34.58 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.54 -7.50 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335652431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.970 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds