Wall clock time and date at job start Mon Mar 30 2020 00:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 115.54598 * 2 1 4 4 O 1.21280 * 119.99503 * 111.99898 * 3 2 1 5 5 N 1.34774 * 119.99951 * 291.98957 * 3 2 1 6 6 C 1.46927 * 120.62983 * 4.50127 * 5 3 2 7 7 C 1.52760 * 109.00428 * 233.57927 * 6 5 3 8 8 C 1.53042 * 109.38487 * 305.58624 * 7 6 5 9 9 C 1.53001 * 109.45710 * 181.26150 * 8 7 6 10 10 C 1.50700 * 109.47274 * 64.93624 * 9 8 7 11 11 H 1.07998 * 119.99755 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99866 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00106 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99721 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47329 * 120.00028 * 14 12 10 17 17 H 1.48503 * 109.46962 * 239.99942 * 14 12 10 18 18 C 1.53043 * 109.53580 * 61.24480 * 8 7 6 19 19 C 1.46927 * 120.62969 * 184.77247 * 5 3 2 20 20 C 1.53001 * 117.49910 * 145.70297 * 2 1 3 21 21 C 1.52995 * 117.49896 * 214.32730 * 2 1 3 22 22 H 1.09004 * 117.49894 * 145.00126 * 21 2 1 23 23 F 1.39892 * 117.50060 * 359.97438 * 21 2 1 24 24 H 1.08997 * 109.46813 * 211.33822 * 1 2 3 25 25 H 1.08998 * 109.46734 * 91.34110 * 1 2 3 26 26 H 1.08993 * 109.47100 * 331.33938 * 1 2 3 27 27 H 1.08999 * 109.58754 * 353.41301 * 6 5 3 28 28 H 1.08997 * 109.58471 * 113.84050 * 6 5 3 29 29 H 1.09000 * 109.56268 * 185.55441 * 7 6 5 30 30 H 1.09001 * 109.38872 * 65.51705 * 7 6 5 31 31 H 1.08996 * 109.46059 * 301.22131 * 8 7 6 32 32 H 1.09000 * 109.46939 * 184.93273 * 9 8 7 33 33 H 1.09000 * 109.47574 * 304.93215 * 9 8 7 34 34 H 0.97002 * 120.00021 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.49708 * 178.68476 * 18 8 7 36 36 H 1.08998 * 109.52174 * 58.59890 * 18 8 7 37 37 H 1.08995 * 109.58801 * 246.15843 * 19 5 3 38 38 H 1.09002 * 109.58570 * 6.58824 * 19 5 3 39 39 H 1.08995 * 117.50094 * 214.98451 * 20 2 1 40 40 H 1.08998 * 117.49810 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.7964 1.7371 0.9739 5 7 2.0762 2.1562 -1.0823 6 6 1.2520 1.7551 -2.2306 7 6 2.1010 1.8197 -3.4989 8 6 2.7201 3.2135 -3.6254 9 6 3.5453 3.2898 -4.9115 10 6 2.6333 3.1475 -6.1028 11 1 1.5714 3.0153 -5.9571 12 6 3.1547 3.1859 -7.3786 13 7 4.4477 3.3474 -7.5559 14 14 2.0243 3.0087 -8.8551 15 1 0.6244 2.8394 -8.3894 16 1 2.1212 4.2250 -9.7015 17 1 2.4288 1.8202 -9.6483 18 6 3.6261 3.4822 -2.4216 19 6 2.7900 3.4392 -1.1387 20 6 2.2365 -1.1212 0.7647 21 6 2.2365 -1.1207 -0.7653 22 1 3.1715 -0.8747 -1.2688 23 9 1.4341 -2.0674 -1.4110 24 1 -0.3633 -0.8777 0.5345 25 1 -0.3633 -0.0241 -1.0274 26 1 -0.3633 0.9017 0.4929 27 1 0.8927 0.7365 -2.0845 28 1 0.4044 2.4336 -2.3266 29 1 1.4743 1.6198 -4.3681 30 1 2.8934 1.0733 -3.4423 31 1 1.9277 3.9613 -3.6577 32 1 4.0569 4.2512 -4.9585 33 1 4.2814 2.4859 -4.9193 34 1 4.8146 3.3741 -8.4535 35 1 4.0849 4.4656 -2.5239 36 1 4.4045 2.7206 -2.3743 37 1 2.0703 4.2577 -1.1439 38 1 3.4450 3.5313 -0.2723 39 1 3.1715 -0.8755 1.2681 40 1 1.6113 -1.8590 1.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335652431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:54 Heat of formation + Delta-G solvation = -93.700419 kcal Electronic energy + Delta-G solvation = -21380.804588 eV Core-core repulsion = 18109.265970 eV Total energy + Delta-G solvation = -3271.538618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.71863 -41.53609 -39.00215 -37.38298 -35.70498 -33.97628 -32.16830 -29.99778 -29.60849 -26.70667 -24.65893 -24.15512 -23.43404 -22.55779 -21.00735 -19.68030 -18.45835 -18.35337 -17.49701 -17.14850 -16.52922 -16.12257 -15.93967 -15.52651 -15.35304 -14.99715 -14.79955 -14.53966 -14.32531 -14.06931 -13.72457 -13.36455 -13.31554 -13.29723 -13.08767 -12.96955 -12.68899 -12.53153 -12.31437 -12.10693 -11.74541 -11.50663 -11.34193 -11.18909 -10.99272 -10.84588 -10.65644 -10.51668 -9.67590 -8.15736 -6.24950 1.35939 1.41598 1.42935 1.54729 1.85134 2.37937 2.43568 2.96278 3.18542 3.31406 3.42923 3.77034 3.89015 3.92643 4.02569 4.10745 4.18196 4.38724 4.48330 4.56734 4.65845 4.70497 4.73562 4.78103 4.82833 4.87674 4.95957 5.02578 5.07992 5.17398 5.30483 5.33101 5.38742 5.53400 5.58819 5.81912 5.90366 6.29197 6.34635 6.92231 7.02200 7.44081 8.96427 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.004863 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.968055 B = 5756.223011 C = 6399.659586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.175 4.175 3 C 0.549 3.451 4 O -0.575 6.575 5 N -0.598 5.598 6 C 0.110 3.890 7 C -0.114 4.114 8 C -0.073 4.073 9 C 0.032 3.968 10 C -0.524 4.524 11 H 0.067 0.933 12 C -0.003 4.003 13 N -0.938 5.938 14 Si 0.958 3.042 15 H -0.257 1.257 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.121 4.121 19 C 0.118 3.882 20 C -0.141 4.141 21 C 0.034 3.966 22 H 0.133 0.867 23 F -0.180 7.180 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.063 0.937 32 H -0.014 1.014 33 H -0.015 1.015 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -7.403 15.109 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.338 3.662 4 O -0.456 6.456 5 N -0.330 5.330 6 C -0.012 4.012 7 C -0.152 4.152 8 C -0.092 4.092 9 C -0.005 4.005 10 C -0.563 4.563 11 H 0.085 0.915 12 C -0.200 4.200 13 N -0.579 5.579 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.160 4.160 19 C -0.004 4.004 20 C -0.178 4.178 21 C -0.002 4.002 22 H 0.151 0.849 23 F -0.161 7.161 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.005 0.995 33 H 0.003 0.997 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.385 -7.198 15.460 19.003 hybrid contribution 0.166 0.138 -1.352 1.370 sum -8.219 -7.060 14.108 17.788 Atomic orbital electron populations 1.21392 0.87506 1.03999 1.03814 1.22228 0.98699 0.88748 1.08232 1.19767 0.79134 0.85433 0.81889 1.90660 1.44553 1.75563 1.34786 1.48183 1.47686 1.20202 1.16885 1.21962 0.93080 1.02310 0.83832 1.21712 0.99376 0.96783 0.97301 1.21043 0.97386 0.96986 0.93760 1.19023 0.94528 0.94291 0.92649 1.21694 0.94671 1.48240 0.91645 0.91479 1.25940 0.96332 0.95254 1.02440 1.70114 1.13351 1.51909 1.22494 0.85493 0.79625 0.77432 0.79087 1.18071 1.20938 1.20900 1.21915 0.97982 1.01901 0.94170 1.21627 0.95919 0.84818 0.98066 1.23921 1.03669 0.97750 0.92457 1.22263 0.94497 0.90237 0.93214 0.84945 1.92808 1.75345 1.65112 1.82792 0.89536 0.90289 0.91209 0.88077 0.89616 0.90616 0.93508 0.91811 0.99528 0.99661 0.93091 0.90825 0.93351 0.89879 0.89866 0.86715 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 8.80 71.98 0.63 -1.15 16 2 C -0.18 -3.63 1.35 -52.93 -0.07 -3.71 16 3 C 0.55 14.96 6.88 87.66 0.60 15.56 16 4 O -0.58 -19.32 16.20 -3.03 -0.05 -19.37 16 5 N -0.60 -15.98 2.98 -819.74 -2.44 -18.42 16 6 C 0.11 2.71 6.00 86.22 0.52 3.23 16 7 C -0.11 -3.71 5.17 30.53 0.16 -3.55 16 8 C -0.07 -2.74 2.10 -10.77 -0.02 -2.76 16 9 C 0.03 1.62 4.45 29.85 0.13 1.75 16 10 C -0.52 -28.18 8.39 25.60 0.21 -27.97 16 11 H 0.07 3.39 7.05 -2.91 -0.02 3.37 16 12 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 13 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 14 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 15 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 C -0.12 -3.95 5.36 30.67 0.16 -3.78 16 19 C 0.12 3.26 6.42 86.36 0.55 3.81 16 20 C -0.14 -2.47 9.69 30.60 0.30 -2.18 16 21 C 0.03 0.70 7.08 30.59 0.22 0.91 16 22 H 0.13 2.78 8.14 -2.38 -0.02 2.76 16 23 F -0.18 -4.02 17.14 44.97 0.77 -3.25 16 24 H 0.09 1.12 7.87 -2.39 -0.02 1.11 16 25 H 0.08 1.21 6.64 -2.39 -0.02 1.19 16 26 H 0.07 1.13 8.03 -2.39 -0.02 1.11 16 27 H 0.10 2.16 4.20 -2.39 -0.01 2.15 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.64 6.91 -2.39 -0.02 2.63 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 2.39 7.03 -2.39 -0.02 2.37 16 39 H 0.11 2.13 8.04 -2.39 -0.02 2.11 16 40 H 0.14 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -66.21 323.01 5.47 -60.74 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.02 Total: 10.82 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 3.86 Total: -19.51 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -2.16 Total: -74.62 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.77 Total: -3.25 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.21 5.47 -60.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335652431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.956 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds