Wall clock time and date at job start Mon Mar 30 2020 00:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 115.54898 * 2 1 4 4 O 1.21277 * 119.99929 * 112.14245 * 3 2 1 5 5 N 1.34786 * 119.99916 * 292.13696 * 3 2 1 6 6 C 1.46922 * 120.62717 * 4.49425 * 5 3 2 7 7 C 1.52761 * 109.00834 * 233.57783 * 6 5 3 8 8 C 1.53039 * 109.38607 * 305.59582 * 7 6 5 9 9 C 1.53000 * 109.45783 * 181.25858 * 8 7 6 10 10 C 1.50697 * 109.47367 * 64.93052 * 9 8 7 11 11 H 1.08002 * 120.00168 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99775 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00010 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 120.00237 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47011 * 89.99786 * 14 12 10 16 16 H 1.48495 * 109.46715 * 209.99663 * 14 12 10 17 17 H 1.48493 * 109.46954 * 329.99499 * 14 12 10 18 18 C 1.53041 * 109.53715 * 61.23743 * 8 7 6 19 19 C 1.46918 * 120.62993 * 184.77448 * 5 3 2 20 20 C 1.52999 * 117.50136 * 214.29508 * 2 1 3 21 21 C 1.52996 * 117.50032 * 145.66873 * 2 1 3 22 22 H 1.09004 * 117.49418 * 359.97438 * 21 2 1 23 23 F 1.39898 * 117.50077 * 214.98155 * 21 2 1 24 24 H 1.08996 * 109.46965 * 272.77406 * 1 2 3 25 25 H 1.08999 * 109.47077 * 152.77002 * 1 2 3 26 26 H 1.09004 * 109.46909 * 32.77545 * 1 2 3 27 27 H 1.08999 * 109.59197 * 353.42168 * 6 5 3 28 28 H 1.09003 * 109.58871 * 113.84542 * 6 5 3 29 29 H 1.08997 * 109.56841 * 185.55378 * 7 6 5 30 30 H 1.09007 * 109.35482 * 65.50583 * 7 6 5 31 31 H 1.08996 * 109.44702 * 301.21994 * 8 7 6 32 32 H 1.09001 * 109.47000 * 184.93379 * 9 8 7 33 33 H 1.09002 * 109.47182 * 304.92717 * 9 8 7 34 34 H 0.96998 * 120.00131 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.49255 * 178.68556 * 18 8 7 36 36 H 1.08995 * 109.52581 * 58.60577 * 18 8 7 37 37 H 1.09002 * 109.58742 * 246.15593 * 19 5 3 38 38 H 1.09004 * 109.58891 * 6.57985 * 19 5 3 39 39 H 1.09003 * 117.49637 * 359.97438 * 20 2 1 40 40 H 1.08998 * 117.50443 * 145.02037 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.7987 1.7360 0.9728 5 7 2.0738 2.1574 -1.0812 6 6 1.2470 1.7576 -2.2281 7 6 2.0930 1.8235 -3.4984 8 6 2.7119 3.2175 -3.6247 9 6 3.5342 3.2952 -4.9126 10 6 2.6195 3.1541 -6.1019 11 1 1.5578 3.0218 -5.9540 12 6 3.1379 3.1940 -7.3788 13 7 2.3397 3.0703 -8.4168 14 14 4.9743 3.4222 -7.6347 15 1 5.6373 2.0940 -7.6742 16 1 5.2108 4.1318 -8.9175 17 1 5.5342 4.2220 -6.5160 18 6 3.6206 3.4848 -2.4226 19 6 2.7874 3.4404 -1.1379 20 6 2.2365 -1.1212 -0.7647 21 6 2.2365 -1.1207 0.7654 22 1 1.6112 -1.8577 1.2693 23 9 3.4366 -0.8049 1.4112 24 1 -0.3633 0.0497 1.0264 25 1 -0.3633 -0.9138 -0.4702 26 1 -0.3633 0.8641 -0.5564 27 1 0.8879 0.7388 -2.0823 28 1 0.3991 2.4362 -2.3216 29 1 1.4644 1.6245 -4.3663 30 1 2.8855 1.0771 -3.4438 31 1 1.9193 3.9651 -3.6542 32 1 4.0457 4.2566 -4.9596 33 1 4.2702 2.4913 -4.9229 34 1 2.7045 3.0980 -9.3151 35 1 4.0792 4.4683 -2.5250 36 1 4.3991 2.7233 -2.3780 37 1 2.0677 4.2590 -1.1406 38 1 3.4445 3.5316 -0.2729 39 1 1.6113 -1.8591 -1.2674 40 1 3.1716 -0.8755 -1.2680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335652433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:59 Heat of formation + Delta-G solvation = -72.512257 kcal Electronic energy + Delta-G solvation = -21395.536502 eV Core-core repulsion = 18124.916671 eV Total energy + Delta-G solvation = -3270.619831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.63110 -40.34730 -37.70808 -36.54494 -34.05100 -32.16974 -30.92781 -28.91526 -28.53533 -25.24009 -23.23380 -22.86561 -22.57970 -20.98262 -19.67768 -18.54203 -17.15790 -16.76243 -16.21521 -16.20030 -15.01722 -14.79881 -14.54556 -14.37953 -13.90544 -13.79979 -13.48176 -13.26698 -13.22661 -12.99473 -12.62965 -12.46008 -12.30671 -12.10863 -12.03800 -11.46904 -11.17841 -10.90798 -10.68379 -10.54377 -10.35514 -10.07880 -9.90502 -9.80766 -9.58204 -9.47894 -9.09321 -8.56685 -8.43486 -6.07742 -4.05200 2.56513 2.89808 3.28127 3.30187 3.36376 3.40014 3.80965 4.23557 4.30014 4.42575 4.65327 4.75719 5.08952 5.24084 5.25551 5.30811 5.35109 5.39501 5.41896 5.43528 5.52574 5.61046 5.67052 5.82458 5.83576 5.89911 5.99285 6.24713 6.27614 6.39665 6.58593 6.76305 6.82248 6.93049 7.23790 7.39175 7.50488 7.76627 8.22655 8.49901 8.96488 9.55655 11.05413 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.004560 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.794898 B = 6138.629500 C = 6274.568867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.171 4.171 3 C 0.548 3.452 4 O -0.535 6.535 5 N -0.600 5.600 6 C 0.102 3.898 7 C -0.120 4.120 8 C -0.072 4.072 9 C -0.009 4.009 10 C -0.516 4.516 11 H 0.073 0.927 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.132 4.132 19 C 0.113 3.887 20 C -0.169 4.169 21 C 0.050 3.950 22 H 0.138 0.862 23 F -0.171 7.171 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.016 0.984 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -7.355 15.631 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.175 4.175 3 C 0.335 3.665 4 O -0.412 6.412 5 N -0.333 5.333 6 C -0.020 4.020 7 C -0.158 4.158 8 C -0.091 4.091 9 C -0.047 4.047 10 C -0.554 4.554 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.191 1.191 18 C -0.170 4.170 19 C -0.009 4.009 20 C -0.206 4.206 21 C 0.014 3.986 22 H 0.156 0.844 23 F -0.151 7.151 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.140 0.860 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.452 -7.124 15.970 17.825 hybrid contribution 1.059 0.175 -0.489 1.179 sum -2.393 -6.949 15.481 17.137 Atomic orbital electron populations 1.21428 0.89049 1.03557 1.03125 1.22189 0.97258 0.90719 1.07337 1.19306 0.79984 0.84635 0.82598 1.90704 1.42444 1.74405 1.33620 1.48079 1.48046 1.20241 1.16899 1.21954 0.93589 1.00597 0.85911 1.21840 0.99676 0.98216 0.96109 1.21008 0.97570 0.96060 0.94442 1.19618 0.95787 0.96279 0.92977 1.21123 0.95466 1.49638 0.89152 0.90847 1.25018 0.97587 0.94675 0.96154 1.69909 1.35048 1.50974 0.98392 0.86820 0.86441 0.78663 0.77606 1.20401 1.21463 1.19081 1.22066 0.98512 1.02091 0.94364 1.21661 0.95752 0.84085 0.99406 1.23961 1.03547 0.99198 0.93927 1.22173 0.85316 0.99292 0.91866 0.84440 1.92866 1.46242 1.93691 1.82284 0.91280 0.90855 0.90762 0.89819 0.91417 0.89121 0.92419 0.91690 0.96606 0.97157 0.92784 0.91051 0.92137 0.91591 0.89683 0.86043 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.97 37.16 0.33 -0.59 16 2 C -0.17 -1.91 1.36 -155.66 -0.21 -2.12 16 3 C 0.55 8.28 6.83 -10.98 -0.08 8.21 16 4 O -0.54 -10.04 15.32 5.56 0.09 -9.96 16 5 N -0.60 -8.61 2.98 -173.03 -0.52 -9.12 16 6 C 0.10 1.33 5.28 -3.93 -0.02 1.30 16 7 C -0.12 -1.96 5.17 -26.83 -0.14 -2.10 16 8 C -0.07 -1.31 2.10 -90.58 -0.19 -1.50 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.52 -13.85 8.94 -34.44 -0.31 -14.16 16 11 H 0.07 2.09 7.30 -52.49 -0.38 1.70 16 12 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 13 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 14 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 18 C -0.13 -2.09 5.36 -26.61 -0.14 -2.24 16 19 C 0.11 1.65 6.42 -3.72 -0.02 1.63 16 20 C -0.17 -1.62 9.42 -26.73 -0.25 -1.87 16 21 C 0.05 0.53 7.50 -26.73 -0.20 0.33 16 22 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 23 F -0.17 -2.55 16.27 2.25 0.04 -2.51 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 26 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 27 H 0.08 0.91 4.84 -51.93 -0.25 0.66 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.30 7.03 -51.93 -0.37 0.94 16 39 H 0.12 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -32.61 317.94 -7.18 -39.79 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.26 Total: -1.73 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.42 Total: -11.64 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.26 Total: -35.44 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.61 -7.18 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335652433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.720 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds