Wall clock time and date at job start Mon Mar 30 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 115.54898 * 2 1 4 4 O 1.21277 * 119.99929 * 112.14245 * 3 2 1 5 5 N 1.34786 * 119.99916 * 292.13696 * 3 2 1 6 6 C 1.46922 * 120.62717 * 4.49425 * 5 3 2 7 7 C 1.52761 * 109.00834 * 233.57783 * 6 5 3 8 8 C 1.53039 * 109.38607 * 305.59582 * 7 6 5 9 9 C 1.53000 * 109.45783 * 181.25858 * 8 7 6 10 10 C 1.50697 * 109.47367 * 64.93052 * 9 8 7 11 11 H 1.08002 * 120.00168 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99775 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00010 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 120.00237 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47011 * 89.99786 * 14 12 10 16 16 H 1.48495 * 109.46715 * 209.99663 * 14 12 10 17 17 H 1.48493 * 109.46954 * 329.99499 * 14 12 10 18 18 C 1.53041 * 109.53715 * 61.23743 * 8 7 6 19 19 C 1.46918 * 120.62993 * 184.77448 * 5 3 2 20 20 C 1.52999 * 117.50136 * 214.29508 * 2 1 3 21 21 C 1.52996 * 117.50032 * 145.66873 * 2 1 3 22 22 H 1.09004 * 117.49418 * 359.97438 * 21 2 1 23 23 F 1.39898 * 117.50077 * 214.98155 * 21 2 1 24 24 H 1.08996 * 109.46965 * 272.77406 * 1 2 3 25 25 H 1.08999 * 109.47077 * 152.77002 * 1 2 3 26 26 H 1.09004 * 109.46909 * 32.77545 * 1 2 3 27 27 H 1.08999 * 109.59197 * 353.42168 * 6 5 3 28 28 H 1.09003 * 109.58871 * 113.84542 * 6 5 3 29 29 H 1.08997 * 109.56841 * 185.55378 * 7 6 5 30 30 H 1.09007 * 109.35482 * 65.50583 * 7 6 5 31 31 H 1.08996 * 109.44702 * 301.21994 * 8 7 6 32 32 H 1.09001 * 109.47000 * 184.93379 * 9 8 7 33 33 H 1.09002 * 109.47182 * 304.92717 * 9 8 7 34 34 H 0.96998 * 120.00131 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.49255 * 178.68556 * 18 8 7 36 36 H 1.08995 * 109.52581 * 58.60577 * 18 8 7 37 37 H 1.09002 * 109.58742 * 246.15593 * 19 5 3 38 38 H 1.09004 * 109.58891 * 6.57985 * 19 5 3 39 39 H 1.09003 * 117.49637 * 359.97438 * 20 2 1 40 40 H 1.08998 * 117.50443 * 145.02037 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.7987 1.7360 0.9728 5 7 2.0738 2.1574 -1.0812 6 6 1.2470 1.7576 -2.2281 7 6 2.0930 1.8235 -3.4984 8 6 2.7119 3.2175 -3.6247 9 6 3.5342 3.2952 -4.9126 10 6 2.6195 3.1541 -6.1019 11 1 1.5578 3.0218 -5.9540 12 6 3.1379 3.1940 -7.3788 13 7 2.3397 3.0703 -8.4168 14 14 4.9743 3.4222 -7.6347 15 1 5.6373 2.0940 -7.6742 16 1 5.2108 4.1318 -8.9175 17 1 5.5342 4.2220 -6.5160 18 6 3.6206 3.4848 -2.4226 19 6 2.7874 3.4404 -1.1379 20 6 2.2365 -1.1212 -0.7647 21 6 2.2365 -1.1207 0.7654 22 1 1.6112 -1.8577 1.2693 23 9 3.4366 -0.8049 1.4112 24 1 -0.3633 0.0497 1.0264 25 1 -0.3633 -0.9138 -0.4702 26 1 -0.3633 0.8641 -0.5564 27 1 0.8879 0.7388 -2.0823 28 1 0.3991 2.4362 -2.3216 29 1 1.4644 1.6245 -4.3663 30 1 2.8855 1.0771 -3.4438 31 1 1.9193 3.9651 -3.6542 32 1 4.0457 4.2566 -4.9596 33 1 4.2702 2.4913 -4.9229 34 1 2.7045 3.0980 -9.3151 35 1 4.0792 4.4683 -2.5250 36 1 4.3991 2.7233 -2.3780 37 1 2.0677 4.2590 -1.1406 38 1 3.4445 3.5316 -0.2729 39 1 1.6113 -1.8591 -1.2674 40 1 3.1716 -0.8755 -1.2680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335652433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:58 Heat of formation + Delta-G solvation = -92.233878 kcal Electronic energy + Delta-G solvation = -21396.391695 eV Core-core repulsion = 18124.916671 eV Total energy + Delta-G solvation = -3271.475024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.60342 -41.47548 -38.95786 -37.53483 -35.67315 -34.04751 -32.16573 -30.37953 -29.44770 -26.70247 -24.51708 -24.13762 -23.40097 -22.42556 -21.03469 -19.71746 -18.83202 -18.09683 -17.39968 -17.11726 -16.39597 -16.13981 -15.77841 -15.56593 -15.27077 -15.06569 -14.83673 -14.42501 -14.36860 -14.17734 -13.89565 -13.73840 -13.52067 -13.24430 -13.06884 -12.82352 -12.78400 -12.42464 -12.17176 -11.98088 -11.73191 -11.40921 -11.36173 -11.16439 -10.95509 -10.85169 -10.72250 -10.65640 -9.66355 -8.24988 -6.26024 1.35006 1.37759 1.46097 1.47968 1.87422 2.37673 2.44849 3.03633 3.10873 3.35194 3.48498 3.88596 3.90258 3.96824 4.05269 4.08945 4.18448 4.37727 4.52205 4.60848 4.63949 4.73893 4.78551 4.81556 4.83972 4.87412 4.94254 5.06766 5.08154 5.14508 5.19739 5.27463 5.35722 5.40814 5.59538 5.71514 5.74033 6.34287 6.37448 6.81213 7.08148 7.37971 8.91005 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.004560 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.794898 B = 6138.629500 C = 6274.568867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.182 4.182 3 C 0.540 3.460 4 O -0.580 6.580 5 N -0.601 5.601 6 C 0.111 3.889 7 C -0.115 4.115 8 C -0.070 4.070 9 C -0.008 4.008 10 C -0.513 4.513 11 H 0.046 0.954 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.938 3.062 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.252 1.252 18 C -0.122 4.122 19 C 0.115 3.885 20 C -0.156 4.156 21 C 0.037 3.963 22 H 0.179 0.821 23 F -0.202 7.202 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.013 0.987 33 H 0.010 0.990 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.160 0.840 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 -8.417 16.590 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.186 4.186 3 C 0.329 3.671 4 O -0.460 6.460 5 N -0.332 5.332 6 C -0.011 4.011 7 C -0.153 4.153 8 C -0.088 4.088 9 C -0.045 4.045 10 C -0.551 4.551 11 H 0.064 0.936 12 C -0.189 4.189 13 N -0.591 5.591 14 Si 0.763 3.237 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.176 1.176 18 C -0.160 4.160 19 C -0.008 4.008 20 C -0.193 4.193 21 C 0.002 3.998 22 H 0.195 0.805 23 F -0.182 7.182 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.791 -8.188 16.932 19.186 hybrid contribution 1.116 0.523 -0.797 1.468 sum -2.675 -7.665 16.135 18.062 Atomic orbital electron populations 1.21494 0.86389 1.04970 1.03895 1.22272 0.98964 0.88537 1.08793 1.20057 0.79311 0.85928 0.81848 1.90679 1.44463 1.75625 1.35195 1.48173 1.47868 1.20054 1.17127 1.21953 0.92798 1.02676 0.83639 1.21722 0.99613 0.96809 0.97191 1.20926 0.97336 0.97270 0.93299 1.19582 0.95497 0.95897 0.93515 1.21433 0.94967 1.48061 0.90648 0.93622 1.25863 1.02156 0.94854 0.96048 1.70046 1.37165 1.52993 0.98925 0.85838 0.81031 0.79020 0.77826 1.19632 1.21340 1.17614 1.21941 0.97944 1.02325 0.93817 1.21603 0.95967 0.85041 0.98157 1.24079 1.02955 0.98900 0.93399 1.22796 0.84515 0.99773 0.92755 0.80450 1.92800 1.48364 1.94027 1.83014 0.90754 0.87730 0.91186 0.87047 0.90221 0.91100 0.92838 0.92084 0.96837 0.97186 0.92758 0.90180 0.92911 0.90136 0.90467 0.82242 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.97 71.98 0.65 -0.73 16 2 C -0.18 -3.59 1.36 -52.93 -0.07 -3.67 16 3 C 0.54 15.71 6.83 87.66 0.60 16.31 16 4 O -0.58 -21.78 15.32 -3.02 -0.05 -21.82 16 5 N -0.60 -16.38 2.98 -819.74 -2.44 -18.82 16 6 C 0.11 2.66 5.28 86.22 0.46 3.12 16 7 C -0.12 -3.65 5.17 30.53 0.16 -3.49 16 8 C -0.07 -2.48 2.10 -10.77 -0.02 -2.50 16 9 C -0.01 -0.34 3.52 29.85 0.10 -0.23 16 10 C -0.51 -27.82 8.94 25.60 0.23 -27.59 16 11 H 0.05 2.67 7.30 -2.91 -0.02 2.65 16 12 C 0.01 0.42 5.47 84.65 0.46 0.88 16 13 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 14 Si 0.94 43.79 27.47 68.60 1.88 45.68 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.25 -11.11 6.54 99.48 0.65 -10.45 16 18 C -0.12 -3.73 5.36 30.67 0.16 -3.57 16 19 C 0.11 3.23 6.42 86.36 0.55 3.78 16 20 C -0.16 -2.54 9.42 30.60 0.29 -2.26 16 21 C 0.04 0.70 7.50 30.59 0.23 0.93 16 22 H 0.18 1.79 8.14 -2.38 -0.02 1.77 16 23 F -0.20 -5.92 16.27 44.97 0.73 -5.19 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.67 7.89 -2.39 -0.02 0.65 16 26 H 0.07 0.94 6.47 -2.38 -0.02 0.93 16 27 H 0.11 2.08 4.84 -2.39 -0.01 2.07 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.54 6.91 -2.39 -0.02 2.52 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16 33 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 2.34 7.03 -2.39 -0.02 2.32 16 39 H 0.16 1.36 8.04 -2.39 -0.02 1.34 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.60 317.94 5.19 -67.41 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.96 Total: 9.35 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 3.80 Total: -19.01 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.14 Total: -76.43 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.73 Total: -5.19 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -72.60 5.19 -67.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335652433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.821 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds