Wall clock time and date at job start Mon Mar 30 2020 00:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47123 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.47011 * 149.99987 * 3 2 1 6 6 H 1.48498 * 109.47040 * 30.00047 * 3 2 1 7 7 C 1.38806 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99643 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99678 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46844 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47166 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47376 * 174.85759 * 12 11 10 14 14 C 1.47899 * 111.00178 * 175.70813 * 13 12 11 15 15 C 1.53990 * 107.06020 * 214.15661 * 14 13 12 16 16 C 1.54594 * 105.14262 * 1.22877 * 15 14 13 17 17 H 1.09007 * 110.72471 * 263.42406 * 16 15 14 18 18 C 1.52994 * 110.72839 * 140.31233 * 16 15 14 19 19 C 1.53002 * 109.47141 * 66.45621 * 18 16 15 20 20 C 1.52994 * 117.49989 * 243.62332 * 19 18 16 21 21 C 1.53000 * 60.00272 * 252.51189 * 20 19 18 22 22 C 1.48535 * 110.99936 * 58.31474 * 13 12 11 23 23 H 0.97000 * 119.99932 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47614 * 300.00071 * 10 9 7 25 25 H 1.08996 * 109.47106 * 60.00117 * 10 9 7 26 26 H 1.09001 * 109.47580 * 300.00253 * 11 10 9 27 27 H 1.09003 * 109.47119 * 60.00628 * 11 10 9 28 28 H 1.09001 * 109.47351 * 294.86195 * 12 11 10 29 29 H 1.09000 * 109.47031 * 54.85926 * 12 11 10 30 30 H 1.08994 * 109.92143 * 333.51224 * 14 13 12 31 31 H 1.09008 * 109.91700 * 94.60769 * 14 13 12 32 32 H 1.09004 * 110.30747 * 120.14335 * 15 14 13 33 33 H 1.09002 * 110.31402 * 242.31190 * 15 14 13 34 34 H 1.08998 * 109.47397 * 186.45450 * 18 16 15 35 35 H 1.09002 * 109.47434 * 306.45656 * 18 16 15 36 36 H 1.09001 * 115.54576 * 29.33117 * 19 18 16 37 37 H 1.09005 * 117.49991 * 359.97438 * 20 19 18 38 38 H 1.09003 * 117.50315 * 145.01644 * 20 19 18 39 39 H 1.09006 * 117.49210 * 252.51301 * 21 20 19 40 40 H 1.08990 * 117.50503 * 107.48744 * 21 20 19 41 41 H 1.09002 * 110.66584 * 278.15938 * 22 13 12 42 42 H 1.09005 * 110.66542 * 41.28648 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5478 1.4401 0.7000 6 1 1.4477 2.6526 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1514 -6.3077 0.0018 13 7 2.6398 -7.6791 0.1266 14 6 3.7376 -8.6653 0.0280 15 6 3.1661 -9.9082 -0.6792 16 6 1.6965 -9.5508 -0.9992 17 1 1.0283 -9.9440 -0.2330 18 6 1.3003 -10.0746 -2.3810 19 6 1.3020 -11.6045 -2.3662 20 6 2.3059 -12.3187 -3.2734 21 6 0.8173 -12.3237 -3.6266 22 6 1.7051 -8.0015 -0.9819 23 1 -0.4850 -0.8400 0.0004 24 1 3.1245 -3.7314 -0.8894 25 1 3.1244 -3.7313 0.8905 26 1 1.3709 -5.4841 0.8914 27 1 1.3706 -5.4847 -0.8886 28 1 3.7076 -6.2108 -0.9306 29 1 3.8098 -6.0877 0.8422 30 1 4.5584 -8.2501 -0.5566 31 1 4.0891 -8.9307 1.0251 32 1 3.7162 -10.1064 -1.5992 33 1 3.2096 -10.7734 -0.0177 34 1 0.3030 -9.7148 -2.6338 35 1 2.0143 -9.7176 -3.1233 36 1 1.0752 -12.0655 -1.4049 37 1 2.9649 -11.6986 -3.8811 38 1 2.7400 -13.2498 -2.9090 39 1 0.2719 -13.2583 -3.4945 40 1 0.4971 -11.7070 -4.4663 41 1 0.7088 -7.6135 -0.7701 42 1 2.0793 -7.6083 -1.9272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339676485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:22 Heat of formation + Delta-G solvation = -5.797080 kcal Electronic energy + Delta-G solvation = -17863.939653 eV Core-core repulsion = 15162.425985 eV Total energy + Delta-G solvation = -2701.513667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53258 -37.61783 -34.51764 -32.52313 -31.73432 -29.44429 -27.00210 -25.28451 -24.38177 -22.69026 -21.65927 -21.36863 -20.24313 -20.10583 -18.10257 -16.28470 -16.13503 -15.35448 -15.26527 -14.51267 -14.31404 -14.11630 -13.84119 -13.62418 -13.20899 -12.88343 -12.54262 -12.38140 -12.15532 -11.94118 -11.83649 -11.68253 -11.35232 -11.11275 -11.00586 -10.90421 -10.87914 -10.65473 -10.41191 -10.36986 -10.18263 -10.11497 -9.33216 -8.99037 -8.43785 -8.29117 -6.68031 -6.61286 -3.98752 3.27905 3.38880 3.42223 3.48268 3.57115 3.94939 4.26079 4.26912 4.53154 4.54541 4.62949 4.68622 4.82304 5.11193 5.15508 5.19512 5.23540 5.26965 5.31271 5.31806 5.41496 5.44314 5.56172 5.57577 5.59697 5.68750 5.69087 5.77761 5.79007 5.79716 5.87512 5.97169 5.99602 6.08361 6.17085 6.25016 6.50652 6.65919 6.87702 7.05390 7.96700 8.51781 9.28938 10.83207 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039948 B = 0.002750 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.737963 B =10179.546927 C =10551.078673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.032 3.968 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.588 4.588 8 H 0.065 0.935 9 S -0.190 6.190 10 C -0.089 4.089 11 C -0.097 4.097 12 C 0.052 3.948 13 N -0.517 5.517 14 C 0.034 3.966 15 C -0.121 4.121 16 C -0.088 4.088 17 H 0.083 0.917 18 C -0.082 4.082 19 C -0.147 4.147 20 C -0.182 4.182 21 C -0.185 4.185 22 C 0.037 3.963 23 H 0.277 0.723 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -23.689 -4.383 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.178 4.178 3 Si 0.913 3.087 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.736 4.736 8 H 0.083 0.917 9 S 0.038 5.962 10 C -0.238 4.238 11 C -0.135 4.135 12 C -0.077 4.077 13 N -0.241 5.241 14 C -0.095 4.095 15 C -0.159 4.159 16 C -0.107 4.107 17 H 0.101 0.899 18 C -0.119 4.119 19 C -0.165 4.165 20 C -0.219 4.219 21 C -0.222 4.222 22 C -0.090 4.090 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.975 -22.248 -3.863 22.928 hybrid contribution 2.179 -1.265 -0.807 2.646 sum 6.154 -23.513 -4.670 24.750 Atomic orbital electron populations 1.70768 1.06669 1.30944 1.43820 1.26090 0.96399 1.02192 0.93110 0.83284 0.74456 0.73927 0.77017 1.21083 1.21298 1.20503 1.23562 0.95630 0.91283 1.63083 0.91653 1.84146 1.12706 1.02020 1.97335 1.23038 1.01348 0.96436 1.03010 1.21322 0.97118 0.91995 1.03093 1.22343 0.97316 0.87739 1.00324 1.64783 1.13771 1.02392 1.43105 1.22870 0.93512 0.92569 1.00500 1.22428 0.95729 0.97582 1.00209 1.22086 0.96706 0.94915 0.96970 0.89864 1.21201 1.01849 0.92288 0.96598 1.22318 1.04207 0.94798 0.95163 1.23023 0.92449 1.02576 1.03840 1.22974 0.97168 1.02541 0.99476 1.23305 0.98204 0.94610 0.92913 0.91049 0.92134 0.91830 0.90671 0.91753 0.94893 0.90680 0.94018 0.90566 0.91531 0.91270 0.91181 0.91821 0.87826 0.88952 0.89077 0.88983 0.88847 0.89714 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.67 55.49 0.76 -26.97 16 2 C 0.03 0.94 5.49 -17.43 -0.10 0.85 16 3 Si 1.09 25.44 29.92 -169.99 -5.09 20.36 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.59 -17.34 9.50 30.94 0.29 -17.05 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 S -0.19 -5.04 20.46 -107.50 -2.20 -7.24 16 10 C -0.09 -1.85 5.67 37.16 0.21 -1.64 16 11 C -0.10 -1.63 4.90 -26.73 -0.13 -1.76 16 12 C 0.05 0.74 4.84 -3.82 -0.02 0.72 16 13 N -0.52 -6.62 5.35 -230.45 -1.23 -7.85 16 14 C 0.03 0.36 6.70 -2.76 -0.02 0.34 16 15 C -0.12 -1.07 6.07 -25.38 -0.15 -1.23 16 16 C -0.09 -0.81 3.05 -88.76 -0.27 -1.09 16 17 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 18 C -0.08 -0.67 4.89 -26.73 -0.13 -0.80 16 19 C -0.15 -1.09 5.30 -90.62 -0.48 -1.57 16 20 C -0.18 -1.25 10.18 -26.73 -0.27 -1.53 16 21 C -0.18 -1.28 10.25 -26.73 -0.27 -1.56 16 22 C 0.04 0.43 4.81 -1.90 -0.01 0.43 16 23 H 0.28 8.76 7.12 -40.82 -0.29 8.47 16 24 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 25 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.09 7.18 -51.93 -0.37 0.72 16 28 H 0.03 0.46 7.97 -51.93 -0.41 0.04 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 32 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 36 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 42 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -31.51 347.08 -11.67 -43.18 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.79 Total: -0.83 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -1.35 Total: -25.88 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.48 Total: -34.82 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.36 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -2.20 Total: -7.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.51 -11.67 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339676485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.384 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds