Wall clock time and date at job start Mon Mar 30 2020 00:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47123 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.47011 * 149.99987 * 3 2 1 6 6 H 1.48498 * 109.47040 * 30.00047 * 3 2 1 7 7 C 1.38806 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99643 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99678 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46844 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47166 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47376 * 174.85759 * 12 11 10 14 14 C 1.47899 * 111.00178 * 175.70813 * 13 12 11 15 15 C 1.53990 * 107.06020 * 214.15661 * 14 13 12 16 16 C 1.54594 * 105.14262 * 1.22877 * 15 14 13 17 17 H 1.09007 * 110.72471 * 263.42406 * 16 15 14 18 18 C 1.52994 * 110.72839 * 140.31233 * 16 15 14 19 19 C 1.53002 * 109.47141 * 66.45621 * 18 16 15 20 20 C 1.52994 * 117.49989 * 243.62332 * 19 18 16 21 21 C 1.53000 * 60.00272 * 252.51189 * 20 19 18 22 22 C 1.48535 * 110.99936 * 58.31474 * 13 12 11 23 23 H 0.97000 * 119.99932 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47614 * 300.00071 * 10 9 7 25 25 H 1.08996 * 109.47106 * 60.00117 * 10 9 7 26 26 H 1.09001 * 109.47580 * 300.00253 * 11 10 9 27 27 H 1.09003 * 109.47119 * 60.00628 * 11 10 9 28 28 H 1.09001 * 109.47351 * 294.86195 * 12 11 10 29 29 H 1.09000 * 109.47031 * 54.85926 * 12 11 10 30 30 H 1.08994 * 109.92143 * 333.51224 * 14 13 12 31 31 H 1.09008 * 109.91700 * 94.60769 * 14 13 12 32 32 H 1.09004 * 110.30747 * 120.14335 * 15 14 13 33 33 H 1.09002 * 110.31402 * 242.31190 * 15 14 13 34 34 H 1.08998 * 109.47397 * 186.45450 * 18 16 15 35 35 H 1.09002 * 109.47434 * 306.45656 * 18 16 15 36 36 H 1.09001 * 115.54576 * 29.33117 * 19 18 16 37 37 H 1.09005 * 117.49991 * 359.97438 * 20 19 18 38 38 H 1.09003 * 117.50315 * 145.01644 * 20 19 18 39 39 H 1.09006 * 117.49210 * 252.51301 * 21 20 19 40 40 H 1.08990 * 117.50503 * 107.48744 * 21 20 19 41 41 H 1.09002 * 110.66584 * 278.15938 * 22 13 12 42 42 H 1.09005 * 110.66542 * 41.28648 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5478 1.4401 0.7000 6 1 1.4477 2.6526 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1514 -6.3077 0.0018 13 7 2.6398 -7.6791 0.1266 14 6 3.7376 -8.6653 0.0280 15 6 3.1661 -9.9082 -0.6792 16 6 1.6965 -9.5508 -0.9992 17 1 1.0283 -9.9440 -0.2330 18 6 1.3003 -10.0746 -2.3810 19 6 1.3020 -11.6045 -2.3662 20 6 2.3059 -12.3187 -3.2734 21 6 0.8173 -12.3237 -3.6266 22 6 1.7051 -8.0015 -0.9819 23 1 -0.4850 -0.8400 0.0004 24 1 3.1245 -3.7314 -0.8894 25 1 3.1244 -3.7313 0.8905 26 1 1.3709 -5.4841 0.8914 27 1 1.3706 -5.4847 -0.8886 28 1 3.7076 -6.2108 -0.9306 29 1 3.8098 -6.0877 0.8422 30 1 4.5584 -8.2501 -0.5566 31 1 4.0891 -8.9307 1.0251 32 1 3.7162 -10.1064 -1.5992 33 1 3.2096 -10.7734 -0.0177 34 1 0.3030 -9.7148 -2.6338 35 1 2.0143 -9.7176 -3.1233 36 1 1.0752 -12.0655 -1.4049 37 1 2.9649 -11.6986 -3.8811 38 1 2.7400 -13.2498 -2.9090 39 1 0.2719 -13.2583 -3.4945 40 1 0.4971 -11.7070 -4.4663 41 1 0.7088 -7.6135 -0.7701 42 1 2.0793 -7.6083 -1.9272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339676485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:21 Heat of formation + Delta-G solvation = -23.118893 kcal Electronic energy + Delta-G solvation = -17864.690783 eV Core-core repulsion = 15162.425985 eV Total energy + Delta-G solvation = -2702.264798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38979 -38.28532 -35.68222 -34.77287 -32.78255 -30.36493 -27.96744 -27.26217 -25.79281 -23.24203 -22.82541 -22.11082 -21.28775 -20.82426 -20.25295 -17.27609 -17.05811 -16.48216 -16.45900 -15.88876 -15.68471 -15.30360 -15.07048 -14.77588 -14.63778 -14.26887 -14.02346 -13.64534 -13.19139 -13.01908 -12.77469 -12.64155 -12.38860 -12.38033 -12.28531 -12.04533 -11.96935 -11.82031 -11.68356 -11.42370 -11.21466 -11.11812 -10.98228 -10.69966 -10.43098 -9.42563 -8.95730 -8.88825 -6.29997 1.39989 1.55585 1.58242 1.77756 2.31351 2.91333 2.96984 2.98736 3.12458 3.55490 3.69973 3.81848 3.89432 4.03190 4.09928 4.11664 4.17766 4.26376 4.33737 4.36576 4.51013 4.55551 4.61517 4.67047 4.69230 4.78572 4.80958 4.88655 4.91590 5.02727 5.03213 5.10373 5.12825 5.16294 5.26059 5.28912 5.35553 5.47360 5.61251 5.92989 6.02777 6.14559 7.02987 8.48936 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039948 B = 0.002750 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.737963 B =10179.546927 C =10551.078673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.137 2.863 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.605 4.605 8 H 0.065 0.935 9 S -0.244 6.244 10 C -0.066 4.066 11 C -0.083 4.083 12 C 0.063 3.937 13 N -0.529 5.529 14 C 0.031 3.969 15 C -0.114 4.114 16 C -0.080 4.080 17 H 0.081 0.919 18 C -0.076 4.076 19 C -0.151 4.151 20 C -0.179 4.179 21 C -0.187 4.187 22 C 0.034 3.966 23 H 0.263 0.737 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -24.765 -4.638 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.222 4.222 3 Si 0.955 3.045 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.753 4.753 8 H 0.083 0.917 9 S -0.016 6.016 10 C -0.216 4.216 11 C -0.122 4.122 12 C -0.067 4.067 13 N -0.253 5.253 14 C -0.096 4.096 15 C -0.152 4.152 16 C -0.099 4.099 17 H 0.100 0.900 18 C -0.114 4.114 19 C -0.170 4.170 20 C -0.216 4.216 21 C -0.224 4.224 22 C -0.094 4.094 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.564 -23.362 -4.123 24.366 hybrid contribution 1.685 -1.036 -0.726 2.107 sum 7.249 -24.397 -4.849 25.909 Atomic orbital electron populations 1.70885 1.07766 1.30194 1.45846 1.27816 0.96442 1.06261 0.91710 0.82699 0.73922 0.69644 0.78237 1.19191 1.19221 1.20010 1.23922 0.95859 0.92664 1.62818 0.91697 1.84219 1.16658 1.03252 1.97463 1.23021 0.98776 0.96660 1.03141 1.21185 0.98097 0.90321 1.02563 1.22158 0.95775 0.87980 1.00797 1.64759 1.14833 1.01977 1.43740 1.22953 0.92916 0.92583 1.01184 1.22398 0.95023 0.97151 1.00628 1.22018 0.97235 0.93047 0.97599 0.90036 1.21129 1.01523 0.92991 0.95772 1.22275 1.05017 0.94111 0.95549 1.23079 0.92362 1.02786 1.03389 1.23043 0.97493 1.02772 0.99116 1.23330 0.97300 0.96414 0.92355 0.92594 0.91809 0.91651 0.91582 0.91941 0.94339 0.90296 0.93734 0.90014 0.90751 0.90043 0.91609 0.91971 0.87561 0.88951 0.88224 0.88242 0.88987 0.90963 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.74 13.67 21.65 0.30 -57.44 16 2 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 3 Si 1.14 50.36 29.92 68.60 2.05 52.41 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.61 -35.93 9.50 67.96 0.65 -35.28 16 8 H 0.06 3.74 7.80 -2.91 -0.02 3.72 16 9 S -0.24 -13.19 20.46 -56.49 -1.16 -14.35 16 10 C -0.07 -2.74 5.67 71.98 0.41 -2.33 16 11 C -0.08 -2.76 4.90 30.59 0.15 -2.61 16 12 C 0.06 1.69 4.84 86.30 0.42 2.11 16 13 N -0.53 -12.83 5.35 -883.01 -4.73 -17.56 16 14 C 0.03 0.60 6.70 86.45 0.58 1.18 16 15 C -0.11 -1.75 6.07 31.47 0.19 -1.56 16 16 C -0.08 -1.37 3.05 -9.59 -0.03 -1.40 16 17 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 18 C -0.08 -1.15 4.89 30.59 0.15 -1.00 16 19 C -0.15 -1.98 5.30 -10.79 -0.06 -2.04 16 20 C -0.18 -2.12 10.18 30.59 0.31 -1.81 16 21 C -0.19 -2.31 10.25 30.60 0.31 -1.99 16 22 C 0.03 0.76 4.81 86.65 0.42 1.17 16 23 H 0.26 17.10 7.12 -92.71 -0.66 16.44 16 24 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 25 H 0.06 2.67 8.14 -2.40 -0.02 2.65 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.11 7.18 -2.39 -0.02 2.09 16 28 H 0.04 1.00 7.97 -2.39 -0.02 0.98 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 0.83 7.67 -2.39 -0.02 0.81 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.05 7.80 -2.38 -0.02 1.03 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.96 7.81 -2.39 -0.02 0.94 16 36 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 37 H 0.09 1.09 8.03 -2.38 -0.02 1.07 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.78 7.77 -2.39 -0.02 1.76 16 42 H 0.04 0.97 7.92 -2.38 -0.02 0.95 16 Total: -1.00 -67.49 347.08 1.48 -66.01 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.06 Total: 17.16 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 3.96 Total: -46.22 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -4.43 Total: -75.01 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.41 kcal Atomic # 16 Polarization: -13.19 SS G_CDS: -1.16 Total: -14.35 kcal Total: -67.49 1.48 -66.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339676485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.890 kcal (2) G-P(sol) polarization free energy of solvation -67.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds