Wall clock time and date at job start Mon Mar 30 2020 00:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47167 * 269.99349 * 3 2 1 5 5 H 1.48500 * 109.47251 * 29.99666 * 3 2 1 6 6 H 1.48503 * 109.46994 * 149.99549 * 3 2 1 7 7 C 1.38802 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99928 * 0.02562 * 7 2 1 9 9 S 1.76206 * 120.00159 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99708 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46872 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47258 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.46982 * 185.14425 * 12 11 10 14 14 C 1.47906 * 110.99885 * 184.28983 * 13 12 11 15 15 C 1.53994 * 107.05926 * 145.84404 * 14 13 12 16 16 C 1.54590 * 105.13855 * 358.77320 * 15 14 13 17 17 H 1.09003 * 110.72637 * 96.40090 * 16 15 14 18 18 C 1.53002 * 110.72416 * 219.50743 * 16 15 14 19 19 C 1.53004 * 109.46957 * 291.14963 * 18 16 15 20 20 C 1.52998 * 117.49836 * 243.74410 * 19 18 16 21 21 C 1.53002 * 117.49445 * 175.08520 * 19 18 16 22 22 C 1.48534 * 111.00104 * 301.67982 * 13 12 11 23 23 H 0.97003 * 119.99759 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47140 * 60.00449 * 10 9 7 25 25 H 1.08996 * 109.47266 * 300.00098 * 10 9 7 26 26 H 1.08996 * 109.47397 * 60.00221 * 11 10 9 27 27 H 1.09004 * 109.47036 * 300.00378 * 11 10 9 28 28 H 1.08996 * 109.47378 * 65.14451 * 12 11 10 29 29 H 1.08999 * 109.47075 * 305.13948 * 12 11 10 30 30 H 1.08998 * 109.91709 * 26.48456 * 14 13 12 31 31 H 1.09000 * 109.91436 * 265.19642 * 14 13 12 32 32 H 1.09003 * 110.30321 * 239.85479 * 15 14 13 33 33 H 1.09003 * 110.30847 * 117.69186 * 15 14 13 34 34 H 1.09005 * 109.47289 * 51.14893 * 18 16 15 35 35 H 1.08997 * 109.47397 * 171.15063 * 18 16 15 36 36 H 1.08996 * 115.54726 * 29.41750 * 19 18 16 37 37 H 1.09001 * 117.49572 * 0.02562 * 20 19 18 38 38 H 1.08997 * 117.50083 * 145.02002 * 20 19 18 39 39 H 1.09002 * 117.49585 * 214.97833 * 21 19 18 40 40 H 1.08996 * 117.50058 * 359.97438 * 21 19 18 41 41 H 1.09004 * 110.66455 * 81.84636 * 22 13 12 42 42 H 1.08998 * 110.66783 * 318.71928 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5956 -3.2365 0.0021 12 6 5.8613 -4.7432 0.0012 13 7 7.3046 -4.9860 0.1265 14 6 7.6099 -6.4298 0.0265 15 6 8.9724 -6.5555 -0.6800 16 6 9.3978 -5.1037 -0.9981 17 1 10.0695 -4.7214 -0.2295 18 6 10.0543 -5.0218 -2.3777 19 6 11.4067 -5.7365 -2.3421 20 6 12.6589 -4.8914 -2.5849 21 6 12.1722 -5.8658 -3.6605 22 6 8.0518 -4.3366 -0.9808 23 1 -0.4850 0.8401 -0.0004 24 1 3.6439 -3.4314 -0.8893 25 1 3.6432 -3.4319 0.8906 26 1 6.0378 -2.7898 0.8926 27 1 6.0393 -2.7891 -0.8874 28 1 5.4998 -5.1754 -0.9318 29 1 5.3411 -5.2044 0.8408 30 1 6.8401 -6.9324 -0.5590 31 1 7.6668 -6.8671 1.0233 32 1 8.8694 -7.1300 -1.6007 33 1 9.6995 -7.0266 -0.0186 34 1 9.4101 -5.4998 -3.1157 35 1 10.2028 -3.9764 -2.6479 36 1 11.4849 -6.5595 -1.6318 37 1 12.5191 -3.8263 -2.7696 38 1 13.5610 -5.1588 -2.0347 39 1 12.7544 -6.7739 -3.8174 40 1 11.7122 -5.4422 -4.5532 41 1 8.2139 -3.2799 -0.7678 42 1 7.5248 -4.4630 -1.9265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339676486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:24 Heat of formation + Delta-G solvation = -0.339748 kcal Electronic energy + Delta-G solvation = -17845.079792 eV Core-core repulsion = 15143.802772 eV Total energy + Delta-G solvation = -2701.277020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.52553 -37.62163 -34.54775 -32.42464 -31.75692 -29.43869 -27.01472 -25.73478 -24.67022 -22.70884 -21.71988 -21.50354 -20.27282 -19.90212 -17.44422 -16.46143 -16.08824 -15.36690 -15.07593 -14.94160 -14.51985 -14.21270 -13.90982 -13.48673 -13.21929 -12.85925 -12.74783 -12.36932 -12.04136 -11.88628 -11.85112 -11.58733 -11.40141 -11.25508 -11.04633 -11.02467 -10.89295 -10.66673 -10.41050 -10.39413 -10.15302 -10.09896 -9.74930 -8.99143 -8.54294 -8.44148 -6.92336 -6.26968 -3.98947 3.02433 3.31114 3.47050 3.47503 3.57963 3.96275 4.22895 4.33180 4.50341 4.59653 4.62045 4.68872 4.80098 4.84469 5.05777 5.11750 5.14918 5.23187 5.30648 5.31816 5.41829 5.49281 5.54588 5.56583 5.58122 5.63827 5.68503 5.74117 5.79315 5.80120 5.86550 5.92969 6.02953 6.08201 6.16313 6.24853 6.50128 6.65733 6.87077 7.05024 7.96903 8.45820 9.19030 10.82562 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031192 B = 0.002976 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.445127 B = 9406.004648 C =10046.862679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.501 4.501 8 H 0.088 0.912 9 S -0.216 6.216 10 C -0.081 4.081 11 C -0.098 4.098 12 C 0.052 3.948 13 N -0.517 5.517 14 C 0.034 3.966 15 C -0.125 4.125 16 C -0.088 4.088 17 H 0.083 0.917 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.182 4.182 21 C -0.185 4.185 22 C 0.038 3.962 23 H 0.270 0.730 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.802 -13.118 -4.143 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.649 4.649 8 H 0.106 0.894 9 S 0.012 5.988 10 C -0.230 4.230 11 C -0.137 4.137 12 C -0.078 4.078 13 N -0.241 5.241 14 C -0.094 4.094 15 C -0.163 4.163 16 C -0.107 4.107 17 H 0.102 0.898 18 C -0.119 4.119 19 C -0.167 4.167 20 C -0.219 4.219 21 C -0.222 4.222 22 C -0.090 4.090 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.475 -11.928 -3.623 26.580 hybrid contribution -1.130 -0.599 -0.820 1.519 sum 22.345 -12.527 -4.443 25.999 Atomic orbital electron populations 1.69940 1.05928 1.27682 1.48397 1.24804 0.94519 0.99030 0.93375 0.86663 0.81788 0.83183 0.79672 1.19413 1.20121 1.16117 1.22131 0.87120 0.97392 1.58253 0.89443 1.84147 1.11635 1.05514 1.97525 1.23013 0.97351 0.99088 1.03592 1.21344 0.94995 0.94217 1.03138 1.22346 0.87620 0.97358 1.00471 1.64789 1.08003 1.08145 1.43133 1.22863 0.96253 0.89763 1.00515 1.22479 0.96592 0.96969 1.00257 1.22062 0.96326 0.95173 0.97125 0.89818 1.21201 0.93986 1.00116 0.96572 1.22343 0.92649 1.02009 0.99718 1.23049 0.98168 0.97506 1.03149 1.22977 1.04329 1.01574 0.93301 1.23300 0.93189 0.99564 0.92968 0.91999 0.91677 0.91336 0.90599 0.91717 0.94775 0.90565 0.93885 0.90526 0.91486 0.91274 0.91567 0.91489 0.87805 0.88746 0.89048 0.89036 0.88859 0.89754 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.04 13.97 55.49 0.78 -26.26 16 2 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 7 C -0.50 -14.74 10.04 30.94 0.31 -14.43 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.22 -5.36 19.41 -107.50 -2.09 -7.44 16 10 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 11 C -0.10 -1.57 4.90 -26.73 -0.13 -1.70 16 12 C 0.05 0.70 4.84 -3.82 -0.02 0.68 16 13 N -0.52 -6.35 5.35 -230.45 -1.23 -7.59 16 14 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 15 C -0.12 -1.06 5.78 -25.38 -0.15 -1.20 16 16 C -0.09 -0.79 3.05 -88.76 -0.27 -1.06 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.08 -0.64 4.91 -26.73 -0.13 -0.77 16 19 C -0.15 -1.08 5.57 -90.62 -0.50 -1.59 16 20 C -0.18 -1.26 10.18 -26.69 -0.27 -1.53 16 21 C -0.18 -1.25 10.25 -26.69 -0.27 -1.53 16 22 C 0.04 0.42 4.81 -1.90 -0.01 0.41 16 23 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 25 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.02 7.18 -51.93 -0.37 0.65 16 28 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.02 -51.93 -0.42 0.12 16 35 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 36 H 0.10 0.74 7.57 -51.93 -0.39 0.34 16 37 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.98 7.77 -51.93 -0.40 0.58 16 42 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -30.60 345.16 -11.25 -41.85 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.84 Total: -1.63 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.35 Total: -21.20 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.46 Total: -33.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.09 Total: -7.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.60 -11.25 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339676486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.512 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds