Wall clock time and date at job start Mon Mar 30 2020 01:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47193 * 299.99403 * 3 2 1 6 6 H 1.48502 * 109.47347 * 59.99994 * 3 2 1 7 7 C 1.37879 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47363 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47581 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00110 * 186.29975 * 11 10 9 13 13 H 1.09000 * 109.46931 * 31.80578 * 12 11 10 14 14 C 1.52995 * 109.47365 * 271.80525 * 12 11 10 15 15 C 1.53001 * 117.49891 * 133.32611 * 14 12 11 16 16 C 1.53001 * 117.49756 * 64.66763 * 14 12 11 17 17 C 1.52997 * 109.46940 * 151.80344 * 12 11 10 18 18 C 1.53004 * 109.82284 * 180.08959 * 17 12 11 19 19 O 1.42906 * 109.47055 * 180.02562 * 18 17 12 20 20 C 1.54384 * 109.83585 * 301.07183 * 17 12 11 21 21 C 1.55300 * 102.25169 * 98.15339 * 20 17 12 22 22 C 1.54944 * 100.94056 * 34.13844 * 21 20 17 23 23 O 1.43242 * 109.83171 * 59.20734 * 17 12 11 24 24 H 0.97004 * 119.99617 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47468 * 300.00212 * 9 7 2 26 26 H 1.09007 * 109.47047 * 59.99973 * 9 7 2 27 27 H 1.09006 * 109.47434 * 300.00692 * 10 9 7 28 28 H 1.09005 * 109.47026 * 59.99783 * 10 9 7 29 29 H 1.00904 * 110.99238 * 310.25413 * 11 10 9 30 30 H 1.09000 * 115.54909 * 279.00208 * 14 12 11 31 31 H 1.08995 * 117.50064 * 0.02562 * 15 14 12 32 32 H 1.09008 * 117.49505 * 145.02089 * 15 14 12 33 33 H 1.09004 * 117.49716 * 214.97833 * 16 14 12 34 34 H 1.08999 * 117.49959 * 359.97438 * 16 14 12 35 35 H 1.08991 * 109.47510 * 300.00173 * 18 17 12 36 36 H 1.09006 * 109.46941 * 60.00523 * 18 17 12 37 37 H 0.96700 * 113.99672 * 180.02562 * 19 18 17 38 38 H 1.08997 * 110.85298 * 216.34959 * 20 17 12 39 39 H 1.09005 * 110.84139 * 339.96489 * 20 17 12 40 40 H 1.08998 * 111.12701 * 276.21833 * 21 20 17 41 41 H 1.08999 * 111.16294 * 152.07186 * 21 20 17 42 42 H 1.09004 * 110.30615 * 204.63704 * 22 21 20 43 43 H 1.09001 * 110.30974 * 82.47168 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 2.4277 -6.0719 0.1504 13 1 3.2800 -5.7731 0.7607 14 6 2.9189 -6.5169 -1.2286 15 6 4.4187 -6.7677 -1.3972 16 6 3.7738 -5.5302 -2.0262 17 6 1.6955 -7.2310 0.8295 18 6 2.6445 -8.4200 0.9923 19 8 1.9531 -9.4979 1.6265 20 6 1.1727 -6.7826 2.2112 21 6 -0.3108 -6.4388 1.9066 22 6 -0.6395 -7.4923 0.8189 23 8 0.5626 -7.6177 0.0428 24 1 -0.4850 0.8401 -0.0004 25 1 0.6238 -2.5567 0.8902 26 1 0.6245 -2.5571 -0.8897 27 1 2.8718 -3.6045 -0.8894 28 1 2.8717 -3.6044 0.8905 29 1 0.8023 -4.9432 0.7186 30 1 2.2356 -7.1567 -1.7870 31 1 5.0555 -6.6161 -0.5256 32 1 4.7222 -7.5725 -2.0669 33 1 3.6534 -5.5212 -3.1096 34 1 3.9860 -4.5638 -1.5688 35 1 2.9962 -8.7411 0.0120 36 1 3.4962 -8.1238 1.6048 37 1 2.4953 -10.2870 1.7625 38 1 1.2420 -7.5950 2.9346 39 1 1.7108 -5.9021 2.5624 40 1 -0.4070 -5.4263 1.5146 41 1 -0.9359 -6.5769 2.7888 42 1 -1.4604 -7.1448 0.1915 43 1 -0.8930 -8.4465 1.2808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339765696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:34 Heat of formation + Delta-G solvation = -69.172486 kcal Electronic energy + Delta-G solvation = -22053.319364 eV Core-core repulsion = 18906.304662 eV Total energy + Delta-G solvation = -3147.014702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36927 -37.37640 -36.45937 -34.81298 -32.95648 -31.84417 -31.27113 -28.86375 -25.60353 -25.37199 -23.30082 -22.24871 -21.95267 -20.81822 -20.39095 -19.38619 -17.60522 -16.47036 -16.35440 -15.89627 -15.45580 -14.92456 -14.67456 -14.46158 -14.30875 -13.72223 -13.39012 -13.13728 -12.91038 -12.50975 -12.25179 -12.13931 -11.77604 -11.60736 -11.41758 -11.12629 -10.97043 -10.90444 -10.77598 -10.55107 -10.48742 -10.19498 -9.99203 -9.87193 -9.79329 -9.39398 -9.15967 -9.03535 -8.35571 -7.71793 -5.99822 -4.02225 3.30940 3.38402 3.42219 3.82866 3.93737 4.06691 4.45564 4.61013 4.75974 4.79053 4.91207 5.07279 5.12268 5.20507 5.30123 5.36289 5.38917 5.42706 5.44569 5.59726 5.76128 5.77565 5.80192 5.86120 5.89323 6.00964 6.02371 6.14572 6.28284 6.31893 6.37288 6.49968 6.63161 7.03186 7.22998 7.49075 7.54642 7.73388 7.86190 8.00856 8.10205 8.44152 9.05045 9.61633 11.11667 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.004914 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.808254 B = 5697.129487 C = 6462.284586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.678 5.678 12 C 0.118 3.882 13 H 0.047 0.953 14 C -0.124 4.124 15 C -0.194 4.194 16 C -0.172 4.172 17 C 0.115 3.885 18 C 0.076 3.924 19 O -0.566 6.566 20 C -0.150 4.150 21 C -0.161 4.161 22 C 0.059 3.941 23 O -0.350 6.350 24 H 0.260 0.740 25 H 0.010 0.990 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.011 0.989 29 H 0.337 0.663 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.375 0.625 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -18.206 3.142 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.069 4.069 11 N -0.314 5.314 12 C 0.008 3.992 13 H 0.065 0.935 14 C -0.143 4.143 15 C -0.232 4.232 16 C -0.209 4.209 17 C 0.075 3.925 18 C -0.003 4.003 19 O -0.371 6.371 20 C -0.188 4.188 21 C -0.198 4.198 22 C -0.018 4.018 23 O -0.269 6.269 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.161 0.839 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.221 0.779 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.079 -17.751 2.246 18.351 hybrid contribution 1.171 0.795 1.146 1.821 sum 5.250 -16.955 3.392 18.071 Atomic orbital electron populations 1.69983 1.06027 1.26452 1.50752 1.24996 0.94825 0.99186 0.95309 0.86546 0.80085 0.83842 0.77579 1.19781 1.20956 1.21069 1.21192 0.92974 0.90952 1.50716 0.92742 1.19089 0.94052 0.90609 0.97575 1.22440 0.97242 0.88457 0.98767 1.60634 1.14778 1.01546 1.54428 1.21276 0.93951 0.90399 0.93593 0.93498 1.22124 0.91767 1.02722 0.97660 1.23045 0.95890 1.00903 1.03354 1.23052 1.03698 0.94724 0.99462 1.22194 0.87918 0.92098 0.90294 1.22459 0.93548 0.87473 0.96793 1.86486 1.42361 1.25813 1.82417 1.23174 0.96440 1.02085 0.97061 1.23418 0.95919 1.00733 0.99766 1.23264 0.88362 0.97343 0.92785 1.88434 1.13795 1.87515 1.37144 0.93061 0.97123 0.95550 0.91353 0.97082 0.83860 0.87297 0.89480 0.89308 0.89164 0.87964 0.92287 0.93130 0.77905 0.89536 0.90442 0.89274 0.89998 0.89873 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.63 5.17 -27.88 -0.14 0.49 16 10 C 0.06 1.25 5.27 -3.82 -0.02 1.23 16 11 N -0.68 -12.53 6.22 -106.73 -0.66 -13.20 16 12 C 0.12 1.82 1.53 -67.72 -0.10 1.71 16 13 H 0.05 0.72 7.45 -51.93 -0.39 0.33 16 14 C -0.12 -1.81 4.03 -90.62 -0.37 -2.18 16 15 C -0.19 -2.37 9.96 -26.69 -0.27 -2.63 16 16 C -0.17 -2.53 9.57 -26.69 -0.26 -2.79 16 17 C 0.12 1.59 0.54 -89.89 -0.05 1.54 16 18 C 0.08 0.87 5.95 37.16 0.22 1.09 16 19 O -0.57 -6.14 12.67 -44.88 -0.57 -6.71 16 20 C -0.15 -1.94 5.47 -24.79 -0.14 -2.08 16 21 C -0.16 -2.07 6.57 -24.49 -0.16 -2.23 16 22 C 0.06 0.79 7.78 38.18 0.30 1.09 16 23 O -0.35 -5.42 9.77 -44.88 -0.44 -5.86 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.07 1.45 5.08 -51.93 -0.26 1.19 16 28 H 0.01 0.23 7.89 -51.93 -0.41 -0.18 16 29 H 0.34 6.12 4.09 -39.29 -0.16 5.96 16 30 H 0.11 1.70 7.66 -51.93 -0.40 1.30 16 31 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.66 5.59 -51.93 -0.29 1.37 16 35 H 0.06 0.67 7.05 -51.93 -0.37 0.30 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.37 2.26 9.12 45.56 0.42 2.68 16 38 H 0.09 1.05 7.22 -51.93 -0.37 0.67 16 39 H 0.08 1.03 7.77 -51.93 -0.40 0.63 16 40 H 0.09 1.31 5.81 -51.93 -0.30 1.01 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -31.91 333.20 -8.61 -40.52 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.28 Total: 8.02 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.39 Total: -18.28 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.07 Total: -39.42 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.01 Total: -12.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.91 -8.61 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.649 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds