Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47193 * 299.99403 * 3 2 1 6 6 H 1.48502 * 109.47347 * 59.99994 * 3 2 1 7 7 C 1.37879 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47363 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47581 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00110 * 186.29975 * 11 10 9 13 13 H 1.09000 * 109.46931 * 31.80578 * 12 11 10 14 14 C 1.52995 * 109.47365 * 271.80525 * 12 11 10 15 15 C 1.53001 * 117.49891 * 133.32611 * 14 12 11 16 16 C 1.53001 * 117.49756 * 64.66763 * 14 12 11 17 17 C 1.52997 * 109.46940 * 151.80344 * 12 11 10 18 18 C 1.53004 * 109.82284 * 180.08959 * 17 12 11 19 19 O 1.42906 * 109.47055 * 180.02562 * 18 17 12 20 20 C 1.54384 * 109.83585 * 301.07183 * 17 12 11 21 21 C 1.55300 * 102.25169 * 98.15339 * 20 17 12 22 22 C 1.54944 * 100.94056 * 34.13844 * 21 20 17 23 23 O 1.43242 * 109.83171 * 59.20734 * 17 12 11 24 24 H 0.97004 * 119.99617 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47468 * 300.00212 * 9 7 2 26 26 H 1.09007 * 109.47047 * 59.99973 * 9 7 2 27 27 H 1.09006 * 109.47434 * 300.00692 * 10 9 7 28 28 H 1.09005 * 109.47026 * 59.99783 * 10 9 7 29 29 H 1.00904 * 110.99238 * 310.25413 * 11 10 9 30 30 H 1.09000 * 115.54909 * 279.00208 * 14 12 11 31 31 H 1.08995 * 117.50064 * 0.02562 * 15 14 12 32 32 H 1.09008 * 117.49505 * 145.02089 * 15 14 12 33 33 H 1.09004 * 117.49716 * 214.97833 * 16 14 12 34 34 H 1.08999 * 117.49959 * 359.97438 * 16 14 12 35 35 H 1.08991 * 109.47510 * 300.00173 * 18 17 12 36 36 H 1.09006 * 109.46941 * 60.00523 * 18 17 12 37 37 H 0.96700 * 113.99672 * 180.02562 * 19 18 17 38 38 H 1.08997 * 110.85298 * 216.34959 * 20 17 12 39 39 H 1.09005 * 110.84139 * 339.96489 * 20 17 12 40 40 H 1.08998 * 111.12701 * 276.21833 * 21 20 17 41 41 H 1.08999 * 111.16294 * 152.07186 * 21 20 17 42 42 H 1.09004 * 110.30615 * 204.63704 * 22 21 20 43 43 H 1.09001 * 110.30974 * 82.47168 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 2.4277 -6.0719 0.1504 13 1 3.2800 -5.7731 0.7607 14 6 2.9189 -6.5169 -1.2286 15 6 4.4187 -6.7677 -1.3972 16 6 3.7738 -5.5302 -2.0262 17 6 1.6955 -7.2310 0.8295 18 6 2.6445 -8.4200 0.9923 19 8 1.9531 -9.4979 1.6265 20 6 1.1727 -6.7826 2.2112 21 6 -0.3108 -6.4388 1.9066 22 6 -0.6395 -7.4923 0.8189 23 8 0.5626 -7.6177 0.0428 24 1 -0.4850 0.8401 -0.0004 25 1 0.6238 -2.5567 0.8902 26 1 0.6245 -2.5571 -0.8897 27 1 2.8718 -3.6045 -0.8894 28 1 2.8717 -3.6044 0.8905 29 1 0.8023 -4.9432 0.7186 30 1 2.2356 -7.1567 -1.7870 31 1 5.0555 -6.6161 -0.5256 32 1 4.7222 -7.5725 -2.0669 33 1 3.6534 -5.5212 -3.1096 34 1 3.9860 -4.5638 -1.5688 35 1 2.9962 -8.7411 0.0120 36 1 3.4962 -8.1238 1.6048 37 1 2.4953 -10.2870 1.7625 38 1 1.2420 -7.5950 2.9346 39 1 1.7108 -5.9021 2.5624 40 1 -0.4070 -5.4263 1.5146 41 1 -0.9359 -6.5769 2.7888 42 1 -1.4604 -7.1448 0.1915 43 1 -0.8930 -8.4465 1.2808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339765696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -92.189945 kcal Electronic energy + Delta-G solvation = -22054.317476 eV Core-core repulsion = 18906.304662 eV Total energy + Delta-G solvation = -3148.012814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47420 -38.55210 -37.30890 -36.40450 -34.84208 -33.11569 -32.50326 -30.58035 -27.08262 -26.49752 -24.98004 -23.43165 -23.00405 -22.38701 -21.65761 -20.54948 -18.64136 -18.44354 -17.55257 -16.98348 -16.64023 -16.49363 -16.05406 -15.86503 -15.35825 -15.04242 -14.83491 -14.54299 -14.10930 -14.06276 -13.56610 -13.40945 -13.27220 -12.88949 -12.86036 -12.65092 -12.45244 -12.37817 -12.06917 -11.92681 -11.72486 -11.68769 -11.41721 -11.29532 -11.04570 -10.93614 -10.72239 -10.57657 -10.26772 -9.21503 -8.21154 -6.32720 1.39489 1.40204 1.53355 2.39418 2.75322 2.88228 3.08064 3.12443 3.54468 3.67831 3.75574 3.81674 3.99345 4.07648 4.20629 4.25266 4.29111 4.33225 4.42207 4.52431 4.54498 4.61922 4.73850 4.79505 4.82917 4.86100 4.88443 4.94972 5.00731 5.02040 5.13800 5.23180 5.31385 5.41228 5.45032 5.66824 5.78545 6.12009 6.18536 6.33008 6.57293 6.84300 6.94843 7.36730 8.91294 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.004914 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.808254 B = 5697.129487 C = 6462.284586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.078 3.922 11 N -0.687 5.687 12 C 0.118 3.882 13 H 0.052 0.948 14 C -0.135 4.135 15 C -0.159 4.159 16 C -0.193 4.193 17 C 0.111 3.889 18 C 0.082 3.918 19 O -0.580 6.580 20 C -0.146 4.146 21 C -0.160 4.160 22 C 0.057 3.943 23 O -0.372 6.372 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.008 1.008 27 H 0.069 0.931 28 H 0.014 0.986 29 H 0.338 0.662 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -19.205 3.777 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.050 4.050 11 N -0.323 5.323 12 C 0.008 3.992 13 H 0.069 0.931 14 C -0.154 4.154 15 C -0.196 4.196 16 C -0.230 4.230 17 C 0.071 3.929 18 C 0.004 3.996 19 O -0.388 6.388 20 C -0.184 4.184 21 C -0.197 4.197 22 C -0.020 4.020 23 O -0.292 6.292 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.032 0.968 29 H 0.162 0.838 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.937 -18.785 2.885 19.911 hybrid contribution 0.540 1.047 0.938 1.506 sum 6.477 -17.738 3.823 19.266 Atomic orbital electron populations 1.70119 1.07851 1.27721 1.51462 1.25965 0.95739 1.03336 0.94575 0.85375 0.79068 0.78641 0.77804 1.18518 1.20395 1.20271 1.21597 0.93474 0.92095 1.50838 0.92153 1.18924 0.94279 0.92562 0.94725 1.22072 0.95819 0.88215 0.98911 1.60578 1.15414 1.01447 1.54900 1.21353 0.93574 0.89774 0.94496 0.93056 1.22041 0.93348 1.02955 0.97053 1.23126 0.93744 0.99413 1.03329 1.23023 1.05511 0.94854 0.99610 1.22272 0.87897 0.92695 0.90001 1.22316 0.93016 0.86812 0.97472 1.86423 1.43403 1.26694 1.82259 1.23163 0.96008 1.02193 0.97029 1.23386 0.96718 0.99205 1.00436 1.23351 0.87853 0.98011 0.92748 1.88403 1.14733 1.87633 1.38390 0.92753 0.99394 0.99000 0.91266 0.96784 0.83806 0.88442 0.88138 0.87029 0.88970 0.89868 0.92074 0.91284 0.75379 0.88179 0.91117 0.91718 0.87885 0.90115 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.78 5.17 29.85 0.15 1.94 16 10 C 0.08 3.41 5.27 86.30 0.45 3.86 16 11 N -0.69 -26.00 6.22 -491.58 -3.06 -29.06 16 12 C 0.12 3.54 1.53 44.91 0.07 3.61 16 13 H 0.05 1.51 7.45 -2.39 -0.02 1.49 16 14 C -0.14 -3.82 4.03 -10.79 -0.04 -3.86 16 15 C -0.16 -3.45 9.96 30.62 0.31 -3.15 16 16 C -0.19 -5.54 9.57 30.62 0.29 -5.25 16 17 C 0.11 2.94 0.54 -10.32 -0.01 2.93 16 18 C 0.08 1.67 5.95 71.98 0.43 2.09 16 19 O -0.58 -10.93 12.67 -139.76 -1.77 -12.70 16 20 C -0.15 -3.63 5.47 31.85 0.17 -3.45 16 21 C -0.16 -4.08 6.57 32.05 0.21 -3.87 16 22 C 0.06 1.49 7.78 72.65 0.56 2.05 16 23 O -0.37 -11.32 9.77 -139.76 -1.37 -12.68 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 27 H 0.07 3.01 5.08 -2.38 -0.01 3.00 16 28 H 0.01 0.60 7.89 -2.38 -0.02 0.58 16 29 H 0.34 12.70 4.09 -89.69 -0.37 12.33 16 30 H 0.10 3.00 7.66 -2.39 -0.02 2.98 16 31 H 0.10 1.95 8.08 -2.39 -0.02 1.93 16 32 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 2.71 5.59 -2.39 -0.01 2.70 16 35 H 0.06 1.21 7.05 -2.39 -0.02 1.19 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.40 3.53 9.12 -74.06 -0.68 2.86 16 38 H 0.10 2.21 7.22 -2.39 -0.02 2.19 16 39 H 0.07 1.83 7.77 -2.38 -0.02 1.81 16 40 H 0.06 1.98 5.81 -2.39 -0.01 1.97 16 41 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.37 333.20 -0.62 -69.99 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.04 Total: 28.64 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.30 Total: -33.65 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.77 Total: -86.25 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -3.14 Total: -25.38 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.37 -0.62 -69.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.200 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds