Wall clock time and date at job start Mon Mar 30 2020 01:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48508 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47468 * 300.00165 * 3 2 1 6 6 H 1.48499 * 109.46973 * 60.00424 * 3 2 1 7 7 C 1.37877 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.46899 * 110.99975 * 180.65314 * 11 10 9 13 13 H 1.09004 * 109.47120 * 356.41983 * 12 11 10 14 14 C 1.52995 * 109.47428 * 116.42202 * 12 11 10 15 15 C 1.53001 * 117.49873 * 6.67635 * 14 12 11 16 16 C 1.53004 * 117.49693 * 298.01926 * 14 12 11 17 17 C 1.52996 * 109.47174 * 236.42343 * 12 11 10 18 18 C 1.53005 * 109.82851 * 180.56545 * 17 12 11 19 19 O 1.42896 * 109.47559 * 184.99547 * 18 17 12 20 20 C 1.54382 * 109.83551 * 59.58513 * 17 12 11 21 21 C 1.55297 * 102.25572 * 219.13416 * 20 17 12 22 22 C 1.54947 * 100.94346 * 34.13099 * 21 20 17 23 23 O 1.43244 * 109.83198 * 301.45189 * 17 12 11 24 24 H 0.96997 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47255 * 59.99769 * 9 7 2 26 26 H 1.09005 * 109.46585 * 300.00228 * 9 7 2 27 27 H 1.09008 * 109.47388 * 59.99768 * 10 9 7 28 28 H 1.08997 * 109.47052 * 300.00164 * 10 9 7 29 29 H 1.00903 * 110.99824 * 56.70144 * 11 10 9 30 30 H 1.09001 * 115.55483 * 152.35175 * 14 12 11 31 31 H 1.09000 * 117.49509 * 0.02562 * 15 14 12 32 32 H 1.08998 * 117.49880 * 145.02021 * 15 14 12 33 33 H 1.08995 * 117.50219 * 214.97476 * 16 14 12 34 34 H 1.08998 * 117.50012 * 0.02562 * 16 14 12 35 35 H 1.08993 * 109.46934 * 305.00511 * 18 17 12 36 36 H 1.09007 * 109.46229 * 64.99500 * 18 17 12 37 37 H 0.96698 * 114.00248 * 180.02562 * 19 18 17 38 38 H 1.09009 * 110.84515 * 337.32036 * 20 17 12 39 39 H 1.08999 * 110.85067 * 100.93712 * 20 17 12 40 40 H 1.09005 * 111.12861 * 276.21432 * 21 20 17 41 41 H 1.08997 * 111.16720 * 152.06455 * 21 20 17 42 42 H 1.09007 * 110.30715 * 204.64224 * 22 21 20 43 43 H 1.08999 * 110.39656 * 82.51736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4351 -6.0758 0.0157 13 1 3.4614 -5.7131 -0.0408 14 6 2.2450 -6.8684 1.3105 15 6 1.0891 -6.4596 2.2258 16 6 2.5323 -6.1472 2.6289 17 6 2.1475 -6.9814 -1.1834 18 6 3.0970 -8.1811 -1.1673 19 8 2.9016 -8.9593 -2.3498 20 6 2.3270 -6.1868 -2.4949 21 6 1.1580 -6.7211 -3.3666 22 6 0.0733 -6.9641 -2.2871 23 8 0.7899 -7.4356 -1.1349 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8818 -4.9890 -0.7870 30 1 2.4906 -7.9288 1.2531 31 1 0.4639 -5.6262 1.9052 32 1 0.5745 -7.2510 2.7707 33 1 2.9665 -6.7332 3.4389 34 1 2.8564 -5.1080 2.5739 35 1 4.1276 -7.8283 -1.1306 36 1 2.8917 -8.7950 -0.2902 37 1 3.4717 -9.7383 -2.4067 38 1 2.2209 -5.1165 -2.3175 39 1 3.2888 -6.4113 -2.9559 40 1 1.4323 -7.6513 -3.8642 41 1 0.8322 -5.9730 -4.0893 42 1 -0.6359 -7.7191 -2.6267 43 1 -0.4467 -6.0347 -2.0551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339765697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:36 Heat of formation + Delta-G solvation = -72.212278 kcal Electronic energy + Delta-G solvation = -22110.729378 eV Core-core repulsion = 18963.582860 eV Total energy + Delta-G solvation = -3147.146518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36726 -37.26299 -36.42292 -34.73318 -32.89228 -31.86318 -31.26267 -28.82690 -25.75810 -25.27626 -23.43111 -22.02106 -21.85443 -20.77822 -20.34524 -19.12180 -17.76612 -16.54597 -16.16233 -16.01015 -15.47639 -14.91238 -14.54548 -14.24789 -14.12470 -13.85872 -13.57785 -13.08171 -12.94256 -12.33647 -12.25741 -12.19037 -11.62365 -11.60220 -11.19253 -11.07052 -10.98657 -10.92192 -10.80508 -10.64596 -10.45932 -10.08580 -9.97175 -9.78520 -9.66263 -9.38769 -9.19811 -9.08304 -8.36167 -7.76271 -6.00200 -4.02774 3.30516 3.38084 3.41714 3.80670 3.95201 4.32727 4.43864 4.62402 4.68068 4.83881 4.93997 5.13801 5.22253 5.23080 5.33565 5.35994 5.39525 5.46090 5.60143 5.63706 5.80300 5.83145 5.87354 5.93632 6.01780 6.05730 6.07571 6.26445 6.28935 6.32216 6.45240 6.62207 6.95103 6.97644 7.19065 7.47693 7.53192 7.72945 7.82952 7.96759 8.08662 8.43016 9.04672 9.61185 11.11181 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.004985 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.486103 B = 5615.588751 C = 6199.960020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.064 3.936 11 N -0.674 5.674 12 C 0.115 3.885 13 H 0.068 0.932 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.184 4.184 17 C 0.103 3.897 18 C 0.076 3.924 19 O -0.564 6.564 20 C -0.147 4.147 21 C -0.148 4.148 22 C 0.050 3.950 23 O -0.352 6.352 24 H 0.260 0.740 25 H 0.012 0.988 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.014 0.986 29 H 0.339 0.661 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.373 0.627 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -17.666 -3.352 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.064 4.064 11 N -0.306 5.306 12 C 0.004 3.996 13 H 0.086 0.914 14 C -0.164 4.164 15 C -0.186 4.186 16 C -0.221 4.221 17 C 0.062 3.938 18 C -0.002 4.002 19 O -0.369 6.369 20 C -0.185 4.185 21 C -0.185 4.185 22 C -0.026 4.026 23 O -0.271 6.271 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.159 0.841 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.219 0.781 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.530 -17.184 -2.625 17.964 hybrid contribution 1.342 0.672 -0.929 1.765 sum 5.872 -16.513 -3.554 17.882 Atomic orbital electron populations 1.69980 1.06014 1.26461 1.50695 1.24990 0.94815 0.99171 0.95309 0.86556 0.80074 0.83885 0.77587 1.19804 1.21052 1.20974 1.21197 0.92956 0.91001 1.50785 0.92789 1.19051 0.93974 0.90386 0.97681 1.22325 0.96974 0.88665 0.98462 1.60568 1.19399 1.01171 1.49499 1.21247 0.96033 0.90716 0.91614 0.91378 1.22245 1.06027 0.97572 0.90580 1.22823 0.91182 1.03450 1.01122 1.22883 1.00747 1.01296 0.97129 1.22499 0.83749 0.92260 0.95257 1.22518 0.97306 0.92806 0.87611 1.86513 1.65896 1.41956 1.42500 1.23137 1.00249 1.00387 0.94688 1.23186 0.95093 1.02044 0.98223 1.23380 0.94666 0.99377 0.85196 1.88469 1.20539 1.74636 1.43424 0.93054 0.96972 0.95599 0.92281 0.96789 0.84125 0.88811 0.86431 0.90707 0.90169 0.88790 0.92947 0.92600 0.78050 0.90194 0.90141 0.89801 0.90477 0.90211 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.68 5.24 -27.89 -0.15 0.54 16 10 C 0.06 1.31 5.02 -3.83 -0.02 1.29 16 11 N -0.67 -11.92 4.21 -106.73 -0.45 -12.37 16 12 C 0.11 1.71 1.92 -67.72 -0.13 1.58 16 13 H 0.07 1.02 7.55 -51.93 -0.39 0.63 16 14 C -0.15 -2.07 5.22 -90.62 -0.47 -2.54 16 15 C -0.15 -2.28 9.85 -26.69 -0.26 -2.55 16 16 C -0.18 -2.66 10.20 -26.69 -0.27 -2.93 16 17 C 0.10 1.39 0.45 -89.89 -0.04 1.35 16 18 C 0.08 0.85 5.72 37.16 0.21 1.06 16 19 O -0.56 -5.96 11.98 -40.13 -0.48 -6.44 16 20 C -0.15 -1.95 5.36 -24.79 -0.13 -2.08 16 21 C -0.15 -1.81 6.79 -24.49 -0.17 -1.98 16 22 C 0.05 0.67 7.20 38.19 0.27 0.94 16 23 O -0.35 -5.28 9.98 -40.13 -0.40 -5.68 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.23 7.61 -51.92 -0.39 0.84 16 28 H 0.01 0.28 7.46 -51.93 -0.39 -0.10 16 29 H 0.34 6.08 5.44 -39.29 -0.21 5.86 16 30 H 0.09 1.22 6.15 -51.93 -0.32 0.90 16 31 H 0.12 2.11 6.93 -51.93 -0.36 1.75 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.52 7.61 -51.93 -0.39 1.12 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.61 6.37 -51.93 -0.33 0.28 16 37 H 0.37 2.21 9.12 45.56 0.42 2.62 16 38 H 0.08 1.20 5.87 -51.92 -0.30 0.89 16 39 H 0.08 0.99 7.79 -51.93 -0.40 0.59 16 40 H 0.08 1.01 7.35 -51.93 -0.38 0.63 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.06 0.85 7.40 -51.93 -0.38 0.47 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -31.08 333.50 -8.51 -39.58 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.35 Total: 8.09 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.57 Total: -18.71 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.29 Total: -38.49 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.88 Total: -12.12 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.08 -8.51 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.629 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds