Wall clock time and date at job start Mon Mar 30 2020 01:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48508 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47468 * 300.00165 * 3 2 1 6 6 H 1.48499 * 109.46973 * 60.00424 * 3 2 1 7 7 C 1.37877 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.46899 * 110.99975 * 180.65314 * 11 10 9 13 13 H 1.09004 * 109.47120 * 356.41983 * 12 11 10 14 14 C 1.52995 * 109.47428 * 116.42202 * 12 11 10 15 15 C 1.53001 * 117.49873 * 6.67635 * 14 12 11 16 16 C 1.53004 * 117.49693 * 298.01926 * 14 12 11 17 17 C 1.52996 * 109.47174 * 236.42343 * 12 11 10 18 18 C 1.53005 * 109.82851 * 180.56545 * 17 12 11 19 19 O 1.42896 * 109.47559 * 184.99547 * 18 17 12 20 20 C 1.54382 * 109.83551 * 59.58513 * 17 12 11 21 21 C 1.55297 * 102.25572 * 219.13416 * 20 17 12 22 22 C 1.54947 * 100.94346 * 34.13099 * 21 20 17 23 23 O 1.43244 * 109.83198 * 301.45189 * 17 12 11 24 24 H 0.96997 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47255 * 59.99769 * 9 7 2 26 26 H 1.09005 * 109.46585 * 300.00228 * 9 7 2 27 27 H 1.09008 * 109.47388 * 59.99768 * 10 9 7 28 28 H 1.08997 * 109.47052 * 300.00164 * 10 9 7 29 29 H 1.00903 * 110.99824 * 56.70144 * 11 10 9 30 30 H 1.09001 * 115.55483 * 152.35175 * 14 12 11 31 31 H 1.09000 * 117.49509 * 0.02562 * 15 14 12 32 32 H 1.08998 * 117.49880 * 145.02021 * 15 14 12 33 33 H 1.08995 * 117.50219 * 214.97476 * 16 14 12 34 34 H 1.08998 * 117.50012 * 0.02562 * 16 14 12 35 35 H 1.08993 * 109.46934 * 305.00511 * 18 17 12 36 36 H 1.09007 * 109.46229 * 64.99500 * 18 17 12 37 37 H 0.96698 * 114.00248 * 180.02562 * 19 18 17 38 38 H 1.09009 * 110.84515 * 337.32036 * 20 17 12 39 39 H 1.08999 * 110.85067 * 100.93712 * 20 17 12 40 40 H 1.09005 * 111.12861 * 276.21432 * 21 20 17 41 41 H 1.08997 * 111.16720 * 152.06455 * 21 20 17 42 42 H 1.09007 * 110.30715 * 204.64224 * 22 21 20 43 43 H 1.08999 * 110.39656 * 82.51736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4351 -6.0758 0.0157 13 1 3.4614 -5.7131 -0.0408 14 6 2.2450 -6.8684 1.3105 15 6 1.0891 -6.4596 2.2258 16 6 2.5323 -6.1472 2.6289 17 6 2.1475 -6.9814 -1.1834 18 6 3.0970 -8.1811 -1.1673 19 8 2.9016 -8.9593 -2.3498 20 6 2.3270 -6.1868 -2.4949 21 6 1.1580 -6.7211 -3.3666 22 6 0.0733 -6.9641 -2.2871 23 8 0.7899 -7.4356 -1.1349 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8818 -4.9890 -0.7870 30 1 2.4906 -7.9288 1.2531 31 1 0.4639 -5.6262 1.9052 32 1 0.5745 -7.2510 2.7707 33 1 2.9665 -6.7332 3.4389 34 1 2.8564 -5.1080 2.5739 35 1 4.1276 -7.8283 -1.1306 36 1 2.8917 -8.7950 -0.2902 37 1 3.4717 -9.7383 -2.4067 38 1 2.2209 -5.1165 -2.3175 39 1 3.2888 -6.4113 -2.9559 40 1 1.4323 -7.6513 -3.8642 41 1 0.8322 -5.9730 -4.0893 42 1 -0.6359 -7.7191 -2.6267 43 1 -0.4467 -6.0347 -2.0551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339765697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:36 Heat of formation + Delta-G solvation = -93.736921 kcal Electronic energy + Delta-G solvation = -22111.662756 eV Core-core repulsion = 18963.582860 eV Total energy + Delta-G solvation = -3148.079896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46521 -38.47568 -37.24958 -36.35734 -34.77969 -33.03771 -32.53234 -30.54169 -27.09252 -26.53791 -25.06641 -23.23143 -23.02258 -22.33861 -21.60404 -20.33538 -18.67451 -18.50734 -17.40371 -17.11895 -16.62824 -16.53670 -15.89466 -15.54719 -15.49172 -15.26835 -14.64351 -14.46059 -14.23039 -13.92293 -13.73589 -13.30506 -13.09043 -12.90999 -12.86108 -12.66103 -12.38623 -12.19453 -12.09879 -12.06287 -11.86899 -11.61949 -11.34168 -11.24534 -10.97071 -10.82259 -10.73219 -10.58151 -10.31091 -9.21319 -8.20864 -6.32361 1.39349 1.40006 1.53016 2.39465 2.75886 2.94284 3.12834 3.25863 3.40417 3.64459 3.77855 3.88087 4.11029 4.15820 4.20656 4.25693 4.38759 4.43410 4.46925 4.53808 4.57133 4.59409 4.73147 4.79614 4.84846 4.90982 4.93702 4.99189 5.00564 5.06598 5.20580 5.27964 5.38106 5.47513 5.65710 5.66319 5.79024 6.09472 6.17242 6.32338 6.51072 6.85054 6.95718 7.37132 8.91488 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.004985 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.486103 B = 5615.588751 C = 6199.960020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.086 3.914 11 N -0.677 5.677 12 C 0.112 3.888 13 H 0.072 0.928 14 C -0.136 4.136 15 C -0.162 4.162 16 C -0.178 4.178 17 C 0.101 3.899 18 C 0.082 3.918 19 O -0.577 6.577 20 C -0.147 4.147 21 C -0.139 4.139 22 C 0.046 3.954 23 O -0.369 6.369 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.008 1.008 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.336 0.664 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 -18.806 -3.681 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.043 4.043 11 N -0.309 5.309 12 C 0.002 3.998 13 H 0.090 0.910 14 C -0.154 4.154 15 C -0.200 4.200 16 C -0.215 4.215 17 C 0.061 3.939 18 C 0.003 3.997 19 O -0.385 6.385 20 C -0.185 4.185 21 C -0.176 4.176 22 C -0.031 4.031 23 O -0.288 6.288 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.010 0.990 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.437 -18.357 -2.957 19.676 hybrid contribution 0.700 0.982 -0.831 1.465 sum 7.137 -17.375 -3.788 19.162 Atomic orbital electron populations 1.70117 1.07846 1.27692 1.51504 1.25954 0.95712 1.03310 0.94632 0.85392 0.79079 0.78740 0.77775 1.18520 1.20320 1.20444 1.21612 0.93460 0.92164 1.50758 0.92179 1.18872 0.94204 0.92337 0.94770 1.21909 0.95466 0.88394 0.98506 1.60482 1.19868 1.01004 1.49545 1.21335 0.95376 0.89999 0.93116 0.91032 1.22324 1.04729 0.98519 0.89860 1.22734 0.91527 1.03150 1.02558 1.22883 0.99817 1.00578 0.98245 1.22529 0.83848 0.93268 0.94255 1.22384 0.97198 0.91961 0.88130 1.86449 1.66923 1.43082 1.42031 1.23111 1.01277 0.98970 0.95116 1.23139 0.94200 1.02466 0.97844 1.23455 0.95167 0.99218 0.85232 1.88440 1.21401 1.74703 1.44302 0.92786 0.99426 0.98981 0.92429 0.96286 0.84449 0.86529 0.89655 0.89124 0.87609 0.90958 0.91221 0.92062 0.75543 0.92501 0.88903 0.89023 0.89866 0.88721 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 1.92 5.24 29.85 0.16 2.08 16 10 C 0.09 3.64 5.02 86.30 0.43 4.07 16 11 N -0.68 -24.59 4.21 -491.58 -2.07 -26.66 16 12 C 0.11 3.25 1.92 44.91 0.09 3.33 16 13 H 0.07 2.05 7.55 -2.39 -0.02 2.03 16 14 C -0.14 -3.66 5.22 -10.79 -0.06 -3.71 16 15 C -0.16 -4.94 9.85 30.62 0.30 -4.64 16 16 C -0.18 -4.95 10.20 30.62 0.31 -4.64 16 17 C 0.10 2.59 0.45 -10.32 0.00 2.59 16 18 C 0.08 1.59 5.72 71.98 0.41 2.00 16 19 O -0.58 -10.38 11.98 -144.29 -1.73 -12.11 16 20 C -0.15 -3.75 5.36 31.85 0.17 -3.58 16 21 C -0.14 -3.24 6.79 32.05 0.22 -3.02 16 22 C 0.05 1.19 7.20 72.65 0.52 1.71 16 23 O -0.37 -10.73 9.98 -144.29 -1.44 -12.17 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 16 27 H 0.06 2.44 7.61 -2.38 -0.02 2.43 16 28 H 0.02 0.78 7.46 -2.39 -0.02 0.76 16 29 H 0.34 12.56 5.44 -89.69 -0.49 12.07 16 30 H 0.12 2.66 6.15 -2.39 -0.01 2.64 16 31 H 0.08 3.18 6.93 -2.39 -0.02 3.16 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.33 7.61 -2.39 -0.02 2.31 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.13 6.37 -2.38 -0.02 1.11 16 37 H 0.39 3.30 9.12 -74.06 -0.68 2.63 16 38 H 0.06 1.71 5.87 -2.38 -0.01 1.69 16 39 H 0.09 2.11 7.79 -2.39 -0.02 2.09 16 40 H 0.09 2.02 7.35 -2.38 -0.02 2.00 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 42 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.05 1.34 7.40 -2.39 -0.02 1.32 16 Total: -1.00 -67.62 333.50 0.16 -67.45 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.16 Total: 28.17 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 3.25 Total: -34.10 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.78 Total: -83.79 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -3.17 Total: -24.28 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.62 0.16 -67.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.285 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds