Wall clock time and date at job start Mon Mar 30 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 103.00057 * 2 1 4 4 C 1.52997 * 112.84982 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47049 * 54.33044 * 4 3 2 6 6 C 1.46904 * 110.99975 * 273.75727 * 5 4 3 7 7 C 1.50701 * 109.46973 * 167.55763 * 6 5 4 8 8 H 1.07998 * 119.99907 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99686 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00015 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99736 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47230 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47014 * 119.99909 * 11 9 7 14 14 H 1.48500 * 109.47088 * 239.99687 * 11 9 7 15 15 C 1.46899 * 111.00328 * 149.80408 * 5 4 3 16 16 C 1.53004 * 109.46947 * 289.31906 * 15 5 4 17 17 C 1.52999 * 117.49555 * 186.16000 * 16 15 5 18 18 C 1.52993 * 60.00332 * 252.50982 * 17 16 15 19 19 C 1.53782 * 113.69126 * 311.26780 * 3 2 1 20 20 C 1.53778 * 87.08296 * 139.99192 * 19 3 2 21 21 C 1.53780 * 87.08287 * 334.56591 * 20 19 3 22 22 H 1.08995 * 109.47657 * 300.00418 * 1 2 3 23 23 H 1.09002 * 109.46604 * 60.00405 * 1 2 3 24 24 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47703 * 294.32895 * 4 3 2 26 26 H 1.09004 * 109.46973 * 174.32621 * 4 3 2 27 27 H 1.08999 * 109.47307 * 287.56316 * 6 5 4 28 28 H 1.09002 * 109.46692 * 47.56288 * 6 5 4 29 29 H 0.96995 * 119.99980 * 179.97438 * 10 9 7 30 30 H 1.08991 * 109.47434 * 169.31926 * 15 5 4 31 31 H 1.09009 * 109.47063 * 49.31539 * 15 5 4 32 32 H 1.08993 * 115.56220 * 331.85518 * 16 15 5 33 33 H 1.09004 * 117.49466 * 145.01623 * 17 16 15 34 34 H 1.08995 * 117.50084 * 0.02562 * 17 16 15 35 35 H 1.09006 * 117.49567 * 107.48701 * 18 17 16 36 36 H 1.09000 * 117.50431 * 252.48986 * 18 17 16 37 37 H 1.08998 * 113.61078 * 254.54409 * 19 3 2 38 38 H 1.09003 * 113.61528 * 25.43738 * 19 3 2 39 39 H 1.08995 * 113.61513 * 220.01837 * 20 19 3 40 40 H 1.09000 * 113.61357 * 89.11202 * 20 19 3 41 41 H 1.08999 * 113.61571 * 270.88740 * 21 20 19 42 42 H 1.09003 * 113.61727 * 139.97972 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7295 2.0292 0.0006 5 7 4.3506 1.3171 -1.1242 6 6 4.6825 -0.0651 -0.7535 7 6 5.0276 -0.8487 -1.9936 8 1 5.0025 -0.3681 -2.9605 9 6 5.3745 -2.1794 -1.8939 10 7 5.4046 -2.7647 -0.7166 11 14 5.8030 -3.1505 -3.4311 12 1 5.6959 -2.2677 -4.6203 13 1 7.1917 -3.6649 -3.3205 14 1 4.8627 -4.2910 -3.5742 15 6 5.5390 2.0321 -1.6083 16 6 5.1073 3.3175 -2.3172 17 6 6.1925 4.1345 -3.0212 18 6 5.5746 4.6457 -1.7183 19 6 1.4561 2.5785 -1.0585 20 6 1.3180 3.6836 0.0019 21 6 1.4563 2.5766 1.0602 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 4.1596 1.6744 0.9372 26 1 3.9126 3.0989 -0.1010 27 1 5.5355 -0.0644 -0.0749 28 1 3.8260 -0.5245 -0.2601 29 1 5.6482 -3.7009 -0.6465 30 1 6.0852 1.3981 -2.3065 31 1 6.1821 2.2812 -0.7641 32 1 4.1190 3.2923 -2.7759 33 1 5.9180 4.6468 -3.9434 34 1 7.2138 3.7561 -2.9798 35 1 6.1895 4.6037 -0.8193 36 1 4.8938 5.4945 -1.7831 37 1 2.0672 2.8676 -1.9135 38 1 0.5057 2.1304 -1.3485 39 1 0.3420 4.1687 0.0025 40 1 2.1449 4.3939 0.0025 41 1 0.5060 2.1279 1.3495 42 1 2.0676 2.8641 1.9157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356195396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:39 Heat of formation + Delta-G solvation = 51.435629 kcal Electronic energy + Delta-G solvation = -19619.539437 eV Core-core repulsion = 16920.507566 eV Total energy + Delta-G solvation = -2699.031871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13077 -37.41753 -35.17906 -32.34092 -28.55921 -28.05383 -27.32631 -25.52835 -24.61714 -23.08403 -22.10181 -20.87590 -19.75981 -18.40198 -16.78476 -15.94093 -15.38159 -15.01628 -14.83921 -14.44922 -14.05258 -13.62957 -13.47032 -13.38987 -12.92876 -12.64470 -12.15458 -11.80497 -11.78580 -11.71687 -11.53331 -11.35101 -11.23611 -10.86908 -10.78327 -10.57578 -10.30478 -10.28943 -10.10949 -10.04919 -9.54513 -9.47837 -9.22504 -8.59955 -8.18227 -7.19753 -6.81236 -5.91649 -3.90325 2.39391 3.31359 3.37684 3.44705 3.49452 4.11048 4.46341 4.60877 4.80071 4.91111 5.01110 5.05615 5.23077 5.25154 5.44867 5.47602 5.54325 5.61598 5.72740 5.75270 5.81240 5.86122 5.90713 5.97691 5.99261 6.10213 6.12993 6.17564 6.27468 6.31888 6.37623 6.43680 6.53492 6.59675 6.82917 7.39232 7.45621 7.91394 8.23937 8.29022 8.62876 9.15518 9.71295 11.19046 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.008358 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.888508 B = 3349.147715 C = 4958.785337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 S -0.168 6.168 3 C -0.035 4.035 4 C 0.089 3.911 5 N -0.526 5.526 6 C 0.193 3.807 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.092 3.908 16 C -0.132 4.132 17 C -0.183 4.183 18 C -0.193 4.193 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.136 4.136 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.036 0.964 26 H 0.074 0.926 27 H -0.013 1.013 28 H 0.061 0.939 29 H 0.258 0.742 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 13.225 1.372 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 S 0.063 5.937 3 C -0.146 4.146 4 C -0.041 4.041 5 N -0.250 5.250 6 C 0.067 3.933 7 C -0.535 4.535 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.211 1.211 15 C -0.037 4.037 16 C -0.151 4.151 17 C -0.221 4.221 18 C -0.230 4.230 19 C -0.160 4.160 20 C -0.178 4.178 21 C -0.177 4.177 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.005 0.995 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.886 12.072 1.078 13.474 hybrid contribution -0.074 0.369 -0.070 0.383 sum -5.960 12.442 1.008 13.833 Atomic orbital electron populations 1.23777 1.01462 1.05036 1.03188 1.88245 1.00629 1.07955 1.96891 1.24113 0.98581 0.93604 0.98341 1.21640 0.89968 0.98380 0.94106 1.62005 1.26790 1.04022 1.32173 1.20036 0.95084 0.81913 0.96235 1.21123 1.44285 0.94610 0.93441 0.91901 1.24941 0.96016 0.97708 0.95822 1.69973 1.49131 1.11739 1.22698 0.86530 0.77686 0.80106 0.83620 1.19726 1.21355 1.21131 1.21589 0.91875 0.92581 0.97621 1.22482 0.98924 0.91477 1.02169 1.22890 0.98759 1.04715 0.95713 1.23027 1.04309 0.98462 0.97164 1.23109 0.99853 0.95553 0.97523 1.22833 1.01429 0.96385 0.97120 1.23309 1.00294 0.96844 0.97206 0.92020 0.91444 0.89212 0.94595 0.90811 0.99549 0.92229 0.93183 0.89173 0.96261 0.87389 0.89347 0.89079 0.89411 0.89568 0.90057 0.90583 0.91877 0.90115 0.90128 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.75 101.05 0.99 -1.49 16 2 S -0.17 -3.29 18.24 -107.50 -1.96 -5.25 16 3 C -0.04 -0.58 1.19 -89.80 -0.11 -0.69 16 4 C 0.09 1.59 4.39 -3.82 -0.02 1.57 16 5 N -0.53 -10.96 4.22 -236.07 -1.00 -11.96 16 6 C 0.19 4.96 4.17 -4.97 -0.02 4.94 16 7 C -0.50 -13.85 8.33 -34.44 -0.29 -14.14 16 8 H 0.06 1.76 7.41 -52.49 -0.39 1.37 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.09 1.73 5.04 -3.82 -0.02 1.71 16 16 C -0.13 -2.02 4.95 -90.62 -0.45 -2.47 16 17 C -0.18 -2.41 10.25 -26.73 -0.27 -2.68 16 18 C -0.19 -2.45 9.90 -26.73 -0.26 -2.71 16 19 C -0.12 -1.74 7.11 -25.92 -0.18 -1.92 16 20 C -0.14 -1.64 7.73 -25.92 -0.20 -1.84 16 21 C -0.14 -1.80 7.11 -25.92 -0.18 -1.98 16 22 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 23 H 0.07 0.94 6.57 -51.92 -0.34 0.59 16 24 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 25 H 0.04 0.69 7.84 -51.93 -0.41 0.28 16 26 H 0.07 1.16 5.93 -51.93 -0.31 0.85 16 27 H -0.01 -0.37 8.10 -51.93 -0.42 -0.79 16 28 H 0.06 1.62 4.35 -29.30 -0.13 1.50 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 1.91 6.79 -51.93 -0.35 1.56 16 31 H 0.02 0.36 7.80 -51.92 -0.41 -0.04 16 32 H 0.11 1.71 7.64 -51.93 -0.40 1.32 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.24 7.59 -51.93 -0.39 0.85 16 38 H 0.08 1.07 6.10 -51.93 -0.32 0.75 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.91 7.61 -51.93 -0.40 0.51 16 41 H 0.08 1.02 6.10 -51.93 -0.32 0.70 16 42 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -29.45 333.53 -10.33 -39.78 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.00 Total: 1.74 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.12 Total: -20.19 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.26 Total: -38.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.96 Total: -5.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.45 -10.33 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356195396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.215 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds