Wall clock time and date at job start Mon Mar 30 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 103.00057 * 2 1 4 4 C 1.52997 * 112.84982 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47049 * 54.33044 * 4 3 2 6 6 C 1.46904 * 110.99975 * 273.75727 * 5 4 3 7 7 C 1.50701 * 109.46973 * 167.55763 * 6 5 4 8 8 H 1.07998 * 119.99907 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99686 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00015 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99736 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47230 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47014 * 119.99909 * 11 9 7 14 14 H 1.48500 * 109.47088 * 239.99687 * 11 9 7 15 15 C 1.46899 * 111.00328 * 149.80408 * 5 4 3 16 16 C 1.53004 * 109.46947 * 289.31906 * 15 5 4 17 17 C 1.52999 * 117.49555 * 186.16000 * 16 15 5 18 18 C 1.52993 * 60.00332 * 252.50982 * 17 16 15 19 19 C 1.53782 * 113.69126 * 311.26780 * 3 2 1 20 20 C 1.53778 * 87.08296 * 139.99192 * 19 3 2 21 21 C 1.53780 * 87.08287 * 334.56591 * 20 19 3 22 22 H 1.08995 * 109.47657 * 300.00418 * 1 2 3 23 23 H 1.09002 * 109.46604 * 60.00405 * 1 2 3 24 24 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47703 * 294.32895 * 4 3 2 26 26 H 1.09004 * 109.46973 * 174.32621 * 4 3 2 27 27 H 1.08999 * 109.47307 * 287.56316 * 6 5 4 28 28 H 1.09002 * 109.46692 * 47.56288 * 6 5 4 29 29 H 0.96995 * 119.99980 * 179.97438 * 10 9 7 30 30 H 1.08991 * 109.47434 * 169.31926 * 15 5 4 31 31 H 1.09009 * 109.47063 * 49.31539 * 15 5 4 32 32 H 1.08993 * 115.56220 * 331.85518 * 16 15 5 33 33 H 1.09004 * 117.49466 * 145.01623 * 17 16 15 34 34 H 1.08995 * 117.50084 * 0.02562 * 17 16 15 35 35 H 1.09006 * 117.49567 * 107.48701 * 18 17 16 36 36 H 1.09000 * 117.50431 * 252.48986 * 18 17 16 37 37 H 1.08998 * 113.61078 * 254.54409 * 19 3 2 38 38 H 1.09003 * 113.61528 * 25.43738 * 19 3 2 39 39 H 1.08995 * 113.61513 * 220.01837 * 20 19 3 40 40 H 1.09000 * 113.61357 * 89.11202 * 20 19 3 41 41 H 1.08999 * 113.61571 * 270.88740 * 21 20 19 42 42 H 1.09003 * 113.61727 * 139.97972 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7295 2.0292 0.0006 5 7 4.3506 1.3171 -1.1242 6 6 4.6825 -0.0651 -0.7535 7 6 5.0276 -0.8487 -1.9936 8 1 5.0025 -0.3681 -2.9605 9 6 5.3745 -2.1794 -1.8939 10 7 5.4046 -2.7647 -0.7166 11 14 5.8030 -3.1505 -3.4311 12 1 5.6959 -2.2677 -4.6203 13 1 7.1917 -3.6649 -3.3205 14 1 4.8627 -4.2910 -3.5742 15 6 5.5390 2.0321 -1.6083 16 6 5.1073 3.3175 -2.3172 17 6 6.1925 4.1345 -3.0212 18 6 5.5746 4.6457 -1.7183 19 6 1.4561 2.5785 -1.0585 20 6 1.3180 3.6836 0.0019 21 6 1.4563 2.5766 1.0602 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 4.1596 1.6744 0.9372 26 1 3.9126 3.0989 -0.1010 27 1 5.5355 -0.0644 -0.0749 28 1 3.8260 -0.5245 -0.2601 29 1 5.6482 -3.7009 -0.6465 30 1 6.0852 1.3981 -2.3065 31 1 6.1821 2.2812 -0.7641 32 1 4.1190 3.2923 -2.7759 33 1 5.9180 4.6468 -3.9434 34 1 7.2138 3.7561 -2.9798 35 1 6.1895 4.6037 -0.8193 36 1 4.8938 5.4945 -1.7831 37 1 2.0672 2.8676 -1.9135 38 1 0.5057 2.1304 -1.3485 39 1 0.3420 4.1687 0.0025 40 1 2.1449 4.3939 0.0025 41 1 0.5060 2.1279 1.3495 42 1 2.0676 2.8641 1.9157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356195396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:39 Heat of formation + Delta-G solvation = 34.905356 kcal Electronic energy + Delta-G solvation = -19620.256243 eV Core-core repulsion = 16920.507566 eV Total energy + Delta-G solvation = -2699.748677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39883 -38.67281 -36.69760 -34.45345 -29.92589 -29.59649 -28.98044 -26.63690 -26.20601 -24.62215 -23.13484 -22.52735 -21.11038 -19.63175 -18.62768 -17.53668 -16.82652 -16.66799 -16.17261 -15.86478 -15.60306 -15.05929 -14.79579 -14.62600 -14.45430 -13.96978 -13.78294 -13.60955 -13.32548 -12.89857 -12.82117 -12.74794 -12.56370 -12.46990 -12.28799 -12.11089 -12.10436 -11.56633 -11.39362 -11.27665 -11.20997 -11.00210 -10.69575 -10.56154 -9.85308 -8.94702 -8.33929 -8.11777 -6.17940 1.05388 1.39585 1.40924 1.53621 2.01987 2.43629 2.96955 3.16883 3.22344 3.67901 3.74419 3.85438 3.94783 4.08917 4.14547 4.25120 4.35168 4.38845 4.45229 4.52992 4.62002 4.68637 4.78903 4.82647 4.85328 4.90115 4.96274 4.99837 5.08564 5.09688 5.22517 5.23172 5.31343 5.33057 5.47418 5.52122 5.56748 5.72900 6.18920 6.47523 6.71314 6.96391 7.48228 8.99173 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.008358 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.888508 B = 3349.147715 C = 4958.785337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.287 6.287 3 C -0.031 4.031 4 C 0.092 3.908 5 N -0.525 5.525 6 C 0.203 3.797 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.960 3.040 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.094 3.906 16 C -0.150 4.150 17 C -0.176 4.176 18 C -0.169 4.169 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.129 4.129 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.013 0.987 26 H 0.101 0.899 27 H -0.057 1.057 28 H 0.053 0.947 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 15.906 0.574 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S -0.057 6.057 3 C -0.142 4.142 4 C -0.037 4.037 5 N -0.248 5.248 6 C 0.076 3.924 7 C -0.543 4.543 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.574 5.574 11 Si 0.785 3.215 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.207 1.207 15 C -0.034 4.034 16 C -0.169 4.169 17 C -0.213 4.213 18 C -0.206 4.206 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.169 4.169 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.031 0.969 26 H 0.119 0.881 27 H -0.040 1.040 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.425 14.782 0.272 16.544 hybrid contribution 0.369 -0.415 0.215 0.596 sum -7.056 14.366 0.487 16.013 Atomic orbital electron populations 1.23625 0.95872 1.05822 1.04881 1.88483 1.06518 1.13375 1.97327 1.24273 0.97777 0.90466 1.01664 1.21691 0.90999 0.99174 0.91850 1.61958 1.27315 1.02359 1.33215 1.19749 0.93212 0.84897 0.94519 1.21379 1.43924 0.95142 0.93833 0.92545 1.25794 0.95998 0.98837 0.98921 1.70108 1.50313 1.12045 1.24888 0.85472 0.77567 0.78502 0.79911 1.18875 1.20611 1.20722 1.21522 0.91134 0.93784 0.96927 1.22182 0.99618 0.90825 1.04229 1.22994 0.97789 1.03527 0.97009 1.23106 1.03674 0.96961 0.96854 1.23125 0.99371 0.96156 0.97292 1.22770 1.03419 0.95357 0.94104 1.23324 1.00100 0.96437 0.97025 0.89702 0.90182 0.88954 0.96890 0.88070 1.03990 0.92966 0.93126 0.92514 0.96769 0.87677 0.87356 0.89461 0.89322 0.86962 0.91103 0.90130 0.89168 0.89011 0.89156 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.75 113.37 1.11 -2.67 16 2 S -0.29 -11.51 18.24 -56.49 -1.03 -12.54 16 3 C -0.03 -1.00 1.19 -10.27 -0.01 -1.02 16 4 C 0.09 3.32 4.39 86.30 0.38 3.70 16 5 N -0.53 -22.79 4.22 -900.78 -3.80 -26.59 16 6 C 0.20 11.13 4.17 85.56 0.36 11.49 16 7 C -0.50 -29.56 8.33 25.60 0.21 -29.35 16 8 H 0.06 3.29 7.41 -2.91 -0.02 3.27 16 9 C 0.00 0.12 5.46 84.66 0.46 0.58 16 10 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 11 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 12 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 15 C 0.09 3.71 5.04 86.30 0.43 4.14 16 16 C -0.15 -4.42 4.95 -10.79 -0.05 -4.48 16 17 C -0.18 -4.25 10.25 30.59 0.31 -3.93 16 18 C -0.17 -3.79 9.90 30.59 0.30 -3.49 16 19 C -0.12 -3.16 7.11 31.12 0.22 -2.94 16 20 C -0.12 -2.28 7.73 31.12 0.24 -2.04 16 21 C -0.13 -3.04 7.11 31.12 0.22 -2.82 16 22 H 0.08 1.98 6.57 -2.39 -0.02 1.96 16 23 H 0.08 2.04 6.57 -2.39 -0.02 2.02 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.01 0.52 7.84 -2.39 -0.02 0.50 16 26 H 0.10 3.03 5.93 -2.39 -0.01 3.02 16 27 H -0.06 -3.54 8.10 -2.39 -0.02 -3.56 16 28 H 0.05 3.04 4.35 -16.77 -0.07 2.97 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.06 2.55 6.79 -2.39 -0.02 2.54 16 31 H 0.01 0.55 7.80 -2.38 -0.02 0.54 16 32 H 0.11 3.20 7.64 -2.39 -0.02 3.18 16 33 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 2.00 8.03 -2.38 -0.02 1.99 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.03 7.59 -2.39 -0.02 2.01 16 38 H 0.08 2.06 6.10 -2.39 -0.01 2.04 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 1.62 7.61 -2.39 -0.02 1.60 16 41 H 0.09 1.98 6.10 -2.39 -0.01 1.97 16 42 H 0.08 1.75 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -68.32 333.53 2.58 -65.73 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.92 Total: 15.90 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.19 Total: -32.81 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.52 Total: -84.63 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -1.03 Total: -12.54 kcal Total: -68.32 2.58 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356195396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.639 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds