Wall clock time and date at job start Mon Mar 30 2020 01:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48500 * 109.46852 * 239.99992 * 3 2 1 5 5 H 1.48495 * 109.46822 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46920 * 120.00139 * 3 2 1 7 7 C 1.37879 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00098 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47068 * 179.97438 * 14 13 11 16 16 O 1.42896 * 109.47357 * 65.00179 * 15 14 13 17 17 C 1.42896 * 114.00446 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46906 * 89.99887 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 209.99746 * 17 16 15 23 23 H 0.97000 * 119.99849 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47635 * 59.99428 * 9 7 2 25 25 H 1.09000 * 109.46655 * 299.99662 * 9 7 2 26 26 H 1.08999 * 109.47203 * 59.99219 * 10 9 7 27 27 H 1.08998 * 109.46849 * 299.99989 * 10 9 7 28 28 H 0.97001 * 119.99874 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.46953 * 59.99894 * 14 13 11 30 30 H 1.08998 * 109.47486 * 299.99861 * 14 13 11 31 31 H 1.08999 * 109.47594 * 304.99755 * 15 14 13 32 32 H 1.09000 * 109.47045 * 185.00032 * 15 14 13 33 33 H 1.09002 * 109.46984 * 330.00066 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9671 0.0021 13 7 2.1657 -6.1343 0.0018 14 6 1.4332 -7.4031 0.0030 15 6 2.4275 -8.5659 0.0029 16 8 3.1707 -8.5574 1.2233 17 6 4.1323 -9.6094 1.3257 18 6 5.4690 -9.1361 0.7513 19 6 6.4989 -10.2622 0.8615 20 6 6.6821 -10.6438 2.3318 21 6 5.3453 -11.1171 2.9062 22 6 4.3157 -9.9915 2.7959 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8894 28 1 3.1357 -6.1343 0.0015 29 1 0.8063 -7.4614 -0.8868 30 1 0.8069 -7.4602 0.8932 31 1 3.1110 -8.4596 -0.8395 32 1 1.8854 -9.5074 -0.0858 33 1 3.7829 -10.4768 0.7657 34 1 5.3386 -8.8638 -0.2960 35 1 5.8184 -8.2687 1.3114 36 1 7.4514 -9.9248 0.4527 37 1 6.1497 -11.1298 0.3017 38 1 7.0312 -9.7761 2.8916 39 1 7.4154 -11.4464 2.4102 40 1 5.4759 -11.3894 3.9535 41 1 4.9962 -11.9848 2.3464 42 1 4.6650 -9.1242 3.3559 43 1 3.3633 -10.3288 3.2050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360035266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:21 Heat of formation + Delta-G solvation = -124.633735 kcal Electronic energy + Delta-G solvation = -20295.434427 eV Core-core repulsion = 17146.014744 eV Total energy + Delta-G solvation = -3149.419682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62066 -38.92556 -36.91266 -34.31587 -33.38133 -31.19198 -31.10395 -30.29644 -28.67393 -25.58872 -23.22033 -22.74695 -22.41736 -21.27350 -20.20379 -19.55135 -17.21339 -16.85510 -16.07847 -15.98933 -15.50422 -14.93731 -14.87868 -14.66899 -14.39610 -14.10790 -13.72342 -13.60444 -12.97455 -12.85786 -12.59206 -12.40812 -12.12017 -11.90474 -11.75351 -11.48088 -11.27508 -11.10402 -10.91474 -10.87174 -10.81567 -10.63366 -10.57735 -9.88809 -9.67598 -9.60361 -9.12280 -8.94291 -8.68219 -8.27186 -5.91570 -3.95795 3.29851 3.37401 3.38619 3.41744 3.43617 3.67568 4.33555 4.37171 4.51388 4.58177 4.72516 4.82452 4.92745 4.98089 5.00456 5.12045 5.12611 5.17318 5.23867 5.40961 5.43069 5.57513 5.61834 5.64728 5.73157 5.79639 5.81546 5.84188 5.93746 5.99587 6.04612 6.30677 6.33043 6.80222 6.97122 7.02368 7.79227 7.92709 8.00044 8.12790 8.44195 8.87846 9.13022 9.67317 11.19424 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002890 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.038847 B = 9687.274437 C =10326.079289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.052 3.948 16 O -0.377 6.377 17 C 0.091 3.909 18 C -0.143 4.143 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.117 4.117 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.399 0.601 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 -25.188 2.174 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.414 6.414 13 N -0.393 5.393 14 C -0.002 4.002 15 C -0.025 4.025 16 O -0.296 6.296 17 C 0.033 3.967 18 C -0.181 4.181 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.233 0.767 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.014 -24.930 2.318 27.771 hybrid contribution 0.977 0.666 -0.248 1.208 sum 12.991 -24.263 2.070 27.600 Atomic orbital electron populations 1.69990 1.06051 1.26639 1.50229 1.25029 0.94826 0.99197 0.95363 0.86651 0.79538 0.83204 0.78525 1.20281 1.21306 1.20248 1.21203 0.92896 0.91070 1.51343 0.92670 1.18891 0.93194 0.89368 0.98592 1.21847 1.00683 0.92007 1.02420 1.21542 0.88617 0.85702 0.74393 1.90662 1.14505 1.87711 1.48524 1.46109 1.10141 1.05295 1.77781 1.21257 0.93848 0.82308 1.02786 1.22817 0.94035 0.98355 0.87313 1.88000 1.52181 1.51283 1.38135 1.22097 0.88312 0.89443 0.96858 1.22059 0.95330 0.99252 1.01454 1.21493 0.98995 0.98270 0.96705 1.21585 0.97181 1.01228 0.96074 1.21496 0.94925 0.97754 1.01229 1.21580 0.99620 0.99094 0.95191 0.92926 0.95865 0.95822 0.90270 0.90362 0.76714 0.90438 0.91037 0.92728 0.92043 0.92420 0.91791 0.90821 0.91644 0.92080 0.91660 0.91937 0.91436 0.91991 0.90915 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.94 13.29 55.43 0.74 -27.21 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.74 5.64 -27.89 -0.16 -2.90 16 11 C 0.51 10.29 7.83 -10.99 -0.09 10.21 16 12 O -0.54 -13.21 15.98 5.55 0.09 -13.12 16 13 N -0.74 -11.12 5.50 -60.30 -0.33 -11.45 16 14 C 0.12 1.58 6.06 -4.04 -0.02 1.55 16 15 C 0.05 0.49 5.88 37.16 0.22 0.71 16 16 O -0.38 -4.10 9.93 -35.23 -0.35 -4.45 16 17 C 0.09 0.76 2.61 -26.73 -0.07 0.69 16 18 C -0.14 -1.10 5.54 -26.73 -0.15 -1.25 16 19 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 20 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 21 C -0.12 -0.71 5.92 -26.76 -0.16 -0.87 16 22 C -0.12 -0.92 5.57 -26.76 -0.15 -1.07 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.40 5.03 8.47 -40.82 -0.35 4.68 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.06 0.43 7.79 -51.93 -0.40 0.03 16 34 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -34.48 349.47 -8.90 -43.38 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.87 Total: -1.61 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.42 Total: -7.80 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.40 Total: -38.66 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.26 Total: -17.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.48 -8.90 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360035266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.254 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds