Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48500 * 109.46852 * 239.99992 * 3 2 1 5 5 H 1.48495 * 109.46822 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46920 * 120.00139 * 3 2 1 7 7 C 1.37879 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00098 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47068 * 179.97438 * 14 13 11 16 16 O 1.42896 * 109.47357 * 65.00179 * 15 14 13 17 17 C 1.42896 * 114.00446 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46906 * 89.99887 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 209.99746 * 17 16 15 23 23 H 0.97000 * 119.99849 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47635 * 59.99428 * 9 7 2 25 25 H 1.09000 * 109.46655 * 299.99662 * 9 7 2 26 26 H 1.08999 * 109.47203 * 59.99219 * 10 9 7 27 27 H 1.08998 * 109.46849 * 299.99989 * 10 9 7 28 28 H 0.97001 * 119.99874 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.46953 * 59.99894 * 14 13 11 30 30 H 1.08998 * 109.47486 * 299.99861 * 14 13 11 31 31 H 1.08999 * 109.47594 * 304.99755 * 15 14 13 32 32 H 1.09000 * 109.47045 * 185.00032 * 15 14 13 33 33 H 1.09002 * 109.46984 * 330.00066 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9671 0.0021 13 7 2.1657 -6.1343 0.0018 14 6 1.4332 -7.4031 0.0030 15 6 2.4275 -8.5659 0.0029 16 8 3.1707 -8.5574 1.2233 17 6 4.1323 -9.6094 1.3257 18 6 5.4690 -9.1361 0.7513 19 6 6.4989 -10.2622 0.8615 20 6 6.6821 -10.6438 2.3318 21 6 5.3453 -11.1171 2.9062 22 6 4.3157 -9.9915 2.7959 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8894 28 1 3.1357 -6.1343 0.0015 29 1 0.8063 -7.4614 -0.8868 30 1 0.8069 -7.4602 0.8932 31 1 3.1110 -8.4596 -0.8395 32 1 1.8854 -9.5074 -0.0858 33 1 3.7829 -10.4768 0.7657 34 1 5.3386 -8.8638 -0.2960 35 1 5.8184 -8.2687 1.3114 36 1 7.4514 -9.9248 0.4527 37 1 6.1497 -11.1298 0.3017 38 1 7.0312 -9.7761 2.8916 39 1 7.4154 -11.4464 2.4102 40 1 5.4759 -11.3894 3.9535 41 1 4.9962 -11.9848 2.3464 42 1 4.6650 -9.1242 3.3559 43 1 3.3633 -10.3288 3.2050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360035266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -147.809233 kcal Electronic energy + Delta-G solvation = -20296.439392 eV Core-core repulsion = 17146.014744 eV Total energy + Delta-G solvation = -3150.424648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73672 -40.04998 -37.67525 -35.70798 -35.43912 -33.07227 -31.69842 -31.22569 -29.67133 -27.54091 -24.35192 -23.53160 -23.17675 -22.74462 -21.25251 -20.69069 -18.82141 -17.95103 -17.50336 -17.22243 -16.65641 -16.44876 -16.34256 -15.65476 -15.31322 -14.93821 -14.76178 -14.61386 -14.23927 -14.14290 -14.01584 -13.37075 -13.23160 -13.15105 -13.01182 -12.76644 -12.61115 -12.47036 -12.02791 -11.90829 -11.88609 -11.63420 -11.45782 -11.39577 -11.31950 -11.19890 -10.73114 -10.55890 -10.31877 -10.05342 -8.17387 -6.31760 1.42074 1.47081 1.54794 1.73068 2.28477 2.45923 2.63631 3.15188 3.75028 3.82667 3.94485 4.07305 4.12594 4.17674 4.30391 4.31732 4.37734 4.46515 4.52568 4.55354 4.59021 4.60313 4.66074 4.70817 4.86922 4.98450 5.09163 5.09850 5.14913 5.25155 5.26300 5.33294 5.41318 5.46407 5.52350 5.53865 5.63783 5.85896 6.18276 6.32256 6.62463 6.86458 7.35911 7.38723 8.95234 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002890 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.038847 B = 9687.274437 C =10326.079289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.714 5.714 14 C 0.118 3.882 15 C 0.060 3.940 16 O -0.401 6.401 17 C 0.088 3.912 18 C -0.141 4.141 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.118 4.118 23 H 0.263 0.737 24 H -0.017 1.017 25 H -0.019 1.019 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.415 0.585 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.904 -26.221 1.735 30.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.368 5.368 14 C -0.006 4.006 15 C -0.016 4.016 16 O -0.321 6.321 17 C 0.031 3.969 18 C -0.179 4.179 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.150 4.150 22 C -0.156 4.156 23 H 0.072 0.928 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.252 0.748 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.875 -26.017 1.880 30.028 hybrid contribution 0.093 0.906 -0.089 0.915 sum 14.968 -25.110 1.791 29.288 Atomic orbital electron populations 1.70175 1.08340 1.27898 1.51402 1.26164 0.95751 1.04013 0.94594 0.85352 0.78041 0.77224 0.79492 1.18603 1.21263 1.18719 1.21695 0.93993 0.91644 1.50941 0.90628 1.18683 0.93704 0.92473 0.94670 1.21624 0.99321 0.90262 1.04695 1.21324 0.87798 0.86860 0.74245 1.90647 1.16656 1.88462 1.51441 1.45855 1.10929 1.04708 1.75261 1.21432 0.94740 0.82269 1.02139 1.22772 0.93785 0.97492 0.87571 1.87968 1.52918 1.52485 1.38753 1.22245 0.88138 0.89310 0.97245 1.22040 0.95295 0.99305 1.01286 1.21490 0.98759 0.98036 0.96937 1.21595 0.97318 1.01327 0.95864 1.21481 0.94438 0.97267 1.01819 1.21597 0.99918 0.99172 0.94899 0.92826 0.99838 1.00093 0.88146 0.87685 0.74849 0.90122 0.92825 0.90865 0.89685 0.90976 0.91431 0.92223 0.91199 0.91152 0.92453 0.90765 0.90936 0.91046 0.92429 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.63 13.29 21.45 0.28 -60.34 16 2 C -0.01 -0.47 5.46 84.66 0.46 0.00 16 3 Si 0.98 44.99 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.54 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.44 4.26 29.85 0.13 2.56 16 10 C -0.12 -5.01 5.64 29.84 0.17 -4.84 16 11 C 0.51 20.74 7.83 87.65 0.69 21.43 16 12 O -0.59 -30.24 15.98 -3.04 -0.05 -30.29 16 13 N -0.71 -20.68 5.50 -463.07 -2.55 -23.23 16 14 C 0.12 2.93 6.06 86.38 0.52 3.45 16 15 C 0.06 1.01 5.88 71.98 0.42 1.43 16 16 O -0.40 -8.03 9.93 -148.98 -1.48 -9.51 16 17 C 0.09 1.30 2.61 30.59 0.08 1.38 16 18 C -0.14 -1.89 5.54 30.59 0.17 -1.72 16 19 C -0.11 -1.16 5.92 30.60 0.18 -0.98 16 20 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 21 C -0.11 -1.17 5.92 30.58 0.18 -0.99 16 22 C -0.12 -1.73 5.57 30.58 0.17 -1.56 16 23 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 24 H -0.02 -1.09 8.10 -2.39 -0.02 -1.10 16 25 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 26 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.41 9.51 8.47 -92.71 -0.79 8.72 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 32 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.07 0.87 7.79 -2.39 -0.02 0.85 16 34 H 0.07 0.84 7.87 -2.39 -0.02 0.82 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -77.74 349.47 2.00 -75.74 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.18 Total: 13.05 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 3.59 Total: -12.43 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -2.26 Total: -83.57 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.53 Total: -39.80 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.74 2.00 -75.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360035266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.068 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds