Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00148 * 2 1 4 4 H 1.48498 * 109.47162 * 270.00177 * 3 2 1 5 5 H 1.48494 * 109.46795 * 30.00243 * 3 2 1 6 6 H 1.48497 * 109.46925 * 150.00183 * 3 2 1 7 7 C 1.37885 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00511 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99781 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00038 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47046 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.46948 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47093 * 179.97438 * 16 15 14 18 18 C 1.42898 * 114.00017 * 179.97438 * 17 16 15 19 19 C 1.54894 * 110.48190 * 93.24436 * 18 17 16 20 20 C 1.55238 * 102.58338 * 156.67678 * 19 18 17 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 0.96998 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47153 * 60.00479 * 9 7 2 25 25 H 1.08999 * 109.47516 * 300.00433 * 9 7 2 26 26 H 1.08999 * 109.46901 * 60.00136 * 10 9 7 27 27 H 1.08999 * 109.47156 * 300.00465 * 10 9 7 28 28 H 0.97003 * 119.99984 * 0.02562 * 13 11 10 29 29 H 1.08999 * 109.47099 * 60.00301 * 14 13 11 30 30 H 1.08999 * 109.46805 * 300.00555 * 14 13 11 31 31 H 1.08999 * 109.47091 * 60.00094 * 15 14 13 32 32 H 1.08991 * 109.47437 * 299.99668 * 15 14 13 33 33 H 1.08999 * 109.47003 * 60.00218 * 16 15 14 34 34 H 1.08999 * 109.47000 * 300.00412 * 16 15 14 35 35 H 1.09002 * 110.43427 * 330.70321 * 18 17 16 36 36 H 1.08996 * 110.75388 * 275.06031 * 19 18 17 37 37 H 1.08993 * 110.76071 * 38.44257 * 19 18 17 38 38 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 39 39 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 40 40 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 41 41 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 42 42 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 43 43 H 1.08996 * 110.07773 * 119.30576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4032 -0.0003 15 6 2.4273 -8.5660 -0.0001 16 6 1.6623 -9.8911 0.0006 17 8 2.5909 -10.9772 0.0001 18 6 1.9763 -12.2673 0.0013 19 6 1.8159 -12.7926 -1.4471 20 6 1.7367 -14.3294 -1.2426 21 6 2.7427 -14.6135 -0.1081 22 6 2.8950 -13.3024 0.6828 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6044 -0.8905 28 1 3.1356 -6.1344 -0.0006 29 1 0.8062 -7.4608 -0.8901 30 1 0.8067 -7.4609 0.8899 31 1 3.0539 -8.5082 0.8899 32 1 3.0540 -8.5084 -0.8900 33 1 1.0354 -9.9491 -0.8892 34 1 1.0358 -9.9485 0.8907 35 1 1.0090 -12.2276 0.5020 36 1 0.8985 -12.4124 -1.8964 37 1 2.6826 -12.5275 -2.0524 38 1 2.0315 -14.8508 -2.1534 39 1 0.7309 -14.6249 -0.9436 40 1 3.7039 -14.9107 -0.5273 41 1 2.3602 -15.3998 0.5427 42 1 3.9303 -12.9633 0.6475 43 1 2.5863 -13.4516 1.7174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360140431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = -121.943751 kcal Electronic energy + Delta-G solvation = -19548.986231 eV Core-core repulsion = 16399.683195 eV Total energy + Delta-G solvation = -3149.303036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.39415 -39.05237 -36.71559 -35.04444 -33.42255 -31.87223 -30.74683 -29.12955 -28.06839 -26.22831 -24.66571 -22.03269 -21.42728 -21.09390 -20.61443 -19.50945 -17.42560 -16.83323 -16.29967 -16.07690 -15.66290 -15.54764 -15.08417 -14.73899 -14.38471 -14.04883 -13.68458 -13.53610 -13.06964 -12.84071 -12.36489 -12.17677 -11.89207 -11.84180 -11.61856 -11.53423 -11.52059 -11.13505 -11.12821 -10.98492 -10.90859 -10.83919 -10.58140 -9.93348 -9.77234 -9.64580 -9.16395 -8.99604 -8.77071 -8.30200 -5.94371 -3.98676 3.13904 3.28378 3.34672 3.40569 3.43342 3.74205 4.16234 4.20659 4.48661 4.49767 4.70876 4.77568 4.89923 4.93504 5.02732 5.06911 5.16044 5.22227 5.30840 5.35071 5.40471 5.45868 5.49824 5.53376 5.61062 5.64378 5.76953 5.78872 5.89849 5.93274 6.02965 6.25837 6.27435 6.72685 6.92158 6.97251 7.76402 7.88599 7.91178 8.09288 8.40782 8.80570 9.10075 9.64696 11.16602 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.074532 B = 0.002088 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.588445 B =13405.154296 C =13568.306641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.536 6.536 13 N -0.744 5.744 14 C 0.122 3.878 15 C -0.129 4.129 16 C 0.066 3.934 17 O -0.380 6.380 18 C 0.083 3.917 19 C -0.148 4.148 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.123 4.123 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.398 0.602 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 -29.059 -0.505 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.399 5.399 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.011 4.011 17 O -0.299 6.299 18 C 0.025 3.975 19 C -0.186 4.186 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.161 4.161 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.589 -28.904 -0.494 29.443 hybrid contribution 0.616 0.830 -0.020 1.034 sum 6.205 -28.073 -0.513 28.756 Atomic orbital electron populations 1.70000 1.06056 1.26558 1.50241 1.25036 0.94837 0.99245 0.95336 0.86580 0.79757 0.83491 0.78045 1.20688 1.21235 1.19900 1.21234 0.92947 0.91028 1.51319 0.92581 1.18903 0.93202 0.89398 0.98622 1.21866 1.00715 0.91910 1.02517 1.21573 0.88646 0.85647 0.74359 1.90665 1.14521 1.87672 1.48251 1.46170 1.10114 1.05482 1.78131 1.21066 0.94295 0.82573 1.02301 1.21675 0.98885 0.92118 1.03994 1.22397 0.91850 0.86306 1.00585 1.87895 1.33507 1.13499 1.94991 1.23017 0.96018 0.83058 0.95408 1.23060 1.02503 0.95576 0.97418 1.22338 0.99497 0.95663 0.98720 1.22085 0.99762 0.97013 0.97200 1.22185 1.01045 0.93827 0.99034 0.92968 0.95827 0.95822 0.90216 0.90211 0.76819 0.91736 0.91746 0.90448 0.90442 0.92974 0.92946 0.91536 0.91391 0.90385 0.91350 0.91493 0.91499 0.91603 0.90448 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 11 C 0.51 9.97 7.83 -10.99 -0.09 9.89 16 12 O -0.54 -12.89 15.98 5.56 0.09 -12.80 16 13 N -0.74 -10.56 5.56 -60.30 -0.33 -10.89 16 14 C 0.12 1.50 5.67 -4.04 -0.02 1.48 16 15 C -0.13 -1.21 5.70 -26.73 -0.15 -1.36 16 16 C 0.07 0.59 5.79 37.16 0.22 0.80 16 17 O -0.38 -3.75 10.05 -35.23 -0.35 -4.10 16 18 C 0.08 0.65 3.33 -25.07 -0.08 0.57 16 19 C -0.15 -1.05 6.65 -24.55 -0.16 -1.21 16 20 C -0.12 -0.71 6.84 -24.88 -0.17 -0.88 16 21 C -0.12 -0.69 6.80 -25.62 -0.17 -0.87 16 22 C -0.12 -0.85 6.56 -25.62 -0.17 -1.02 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -34.32 354.09 -8.93 -43.25 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.89 Total: -2.26 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.49 Total: -8.40 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.40 Total: -37.83 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.27 Total: -16.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.32 -8.93 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360140431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.691 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds