Wall clock time and date at job start Mon Mar 30 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99679 * 2 1 4 4 H 1.48497 * 109.46844 * 239.99814 * 3 2 1 5 5 H 1.48495 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46916 * 119.99600 * 3 2 1 7 7 C 1.37869 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47217 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00098 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00166 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00156 * 179.97438 * 13 11 10 15 15 H 1.08991 * 109.47169 * 325.00089 * 14 13 11 16 16 C 1.52999 * 109.47084 * 84.99768 * 14 13 11 17 17 O 1.42903 * 109.47256 * 65.00345 * 16 14 13 18 18 C 1.53002 * 109.46869 * 204.99778 * 14 13 11 19 19 C 1.53001 * 109.47315 * 65.00315 * 18 14 13 20 20 C 1.54262 * 110.02859 * 292.16656 * 19 18 14 21 21 C 1.54892 * 104.19402 * 217.10369 * 20 19 18 22 22 C 1.54883 * 102.74872 * 37.94268 * 21 20 19 23 23 C 1.53869 * 110.03507 * 174.99658 * 19 18 14 24 24 H 0.96993 * 120.00105 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46819 * 59.99726 * 9 7 2 26 26 H 1.08994 * 109.47042 * 300.00044 * 9 7 2 27 27 H 1.09002 * 109.46867 * 59.99749 * 10 9 7 28 28 H 1.09004 * 109.46682 * 299.99959 * 10 9 7 29 29 H 0.97004 * 119.99534 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.47286 * 304.99906 * 16 14 13 31 31 H 1.09008 * 109.47201 * 184.99686 * 16 14 13 32 32 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 33 33 H 1.09006 * 109.46629 * 184.99734 * 18 14 13 34 34 H 1.08992 * 109.47234 * 304.99810 * 18 14 13 35 35 H 1.09005 * 110.01448 * 53.60019 * 19 18 14 36 36 H 1.09001 * 110.48629 * 335.78053 * 20 19 18 37 37 H 1.08998 * 110.49315 * 98.42594 * 20 19 18 38 38 H 1.09001 * 110.75522 * 279.62361 * 21 20 19 39 39 H 1.09000 * 110.91521 * 156.33089 * 21 20 19 40 40 H 1.09000 * 110.48619 * 203.38370 * 22 21 20 41 41 H 1.08998 * 110.49184 * 80.73699 * 22 21 20 42 42 H 1.08992 * 110.03483 * 238.56912 * 23 19 18 43 43 H 1.08998 * 110.03174 * 359.94913 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 -0.0001 12 8 0.2792 -4.9672 -0.0010 13 7 2.1659 -6.1343 0.0003 14 6 1.4334 -7.4031 0.0003 15 1 0.5226 -7.2967 0.5893 16 6 1.0700 -7.7821 -1.4368 17 8 2.2645 -8.0352 -2.1793 18 6 2.3105 -8.4983 0.6103 19 6 2.5708 -8.1813 2.0843 20 6 3.4605 -6.9269 2.2059 21 6 4.3842 -7.2318 3.4113 22 6 4.6801 -8.7426 3.2416 23 6 3.3462 -9.3357 2.7428 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 3.1359 -6.1343 0.0006 30 1 0.5205 -6.9630 -1.9007 31 1 0.4495 -8.6783 -1.4304 32 1 2.1097 -8.2813 -3.1016 33 1 1.8011 -9.4586 0.5297 34 1 3.2591 -8.5441 0.0755 35 1 1.6261 -8.0216 2.6041 36 1 4.0496 -6.7878 1.2994 37 1 2.8516 -6.0451 2.4054 38 1 3.8668 -7.0427 4.3519 39 1 5.3036 -6.6492 3.3540 40 1 4.9612 -9.1859 4.1969 41 1 5.4662 -8.8967 2.5024 42 1 2.7783 -9.7358 3.5827 43 1 3.5363 -10.1222 2.0125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360559652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:54 Heat of formation + Delta-G solvation = -144.967029 kcal Electronic energy + Delta-G solvation = -21303.656535 eV Core-core repulsion = 18153.355135 eV Total energy + Delta-G solvation = -3150.301400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10492 -39.33697 -37.88614 -35.72427 -35.46562 -33.25853 -32.23187 -29.69924 -29.47754 -27.58546 -25.68849 -24.00841 -21.91993 -21.78774 -21.01037 -20.30950 -18.82509 -18.38239 -17.46419 -17.29049 -16.62610 -16.43452 -16.22163 -15.89814 -15.33579 -14.95632 -14.51093 -14.35506 -14.21930 -14.11491 -13.93699 -13.50071 -13.22408 -12.83364 -12.76408 -12.50312 -12.33999 -11.93655 -11.91400 -11.84506 -11.67283 -11.60475 -11.50607 -11.42714 -11.31630 -11.19924 -10.96134 -10.60452 -10.55801 -9.90222 -8.17633 -6.31877 1.41748 1.46440 1.54159 1.76155 2.29633 2.46045 3.15079 3.41300 3.58063 3.77551 3.78307 4.04510 4.13024 4.20152 4.37715 4.48564 4.51484 4.54926 4.57722 4.61560 4.67843 4.71978 4.79916 4.88793 4.96395 4.99981 5.09602 5.12364 5.16227 5.25306 5.32082 5.38282 5.48629 5.53424 5.56613 5.63479 5.67813 5.85587 6.18326 6.66532 6.86008 6.86945 7.37735 7.40588 8.94865 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.004295 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.018770 B = 6518.103554 C = 7449.809276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.045 3.955 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.591 6.591 13 N -0.703 5.703 14 C 0.141 3.859 15 H 0.076 0.924 16 C 0.069 3.931 17 O -0.575 6.575 18 C -0.098 4.098 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.116 4.116 24 H 0.263 0.737 25 H -0.019 1.019 26 H -0.018 1.018 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.411 0.589 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.394 0.606 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -22.151 1.978 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.008 3.992 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.358 5.358 14 C 0.036 3.964 15 H 0.094 0.906 16 C -0.010 4.010 17 O -0.382 6.382 18 C -0.136 4.136 19 C -0.113 4.113 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.153 4.153 24 H 0.072 0.928 25 H -0.001 1.001 26 H 0.000 1.000 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.250 0.750 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.243 0.757 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.932 -21.930 2.545 24.209 hybrid contribution -0.337 1.076 -0.576 1.266 sum 9.595 -20.854 1.968 23.040 Atomic orbital electron populations 1.70172 1.08298 1.27862 1.51417 1.26124 0.95710 1.03881 0.94560 0.85381 0.78079 0.77363 0.79465 1.18725 1.21222 1.18703 1.21682 0.93927 0.91693 1.50949 0.90789 1.18652 0.93609 0.92389 0.94589 1.21626 0.99358 0.90687 1.04372 1.21231 0.87803 0.86797 0.74170 1.90634 1.16489 1.88407 1.51584 1.46168 1.10710 1.04304 1.74586 1.21182 0.96539 0.83932 0.94730 0.90576 1.22509 0.87131 0.99181 0.92200 1.86394 1.31496 1.92124 1.28227 1.21801 1.00480 0.96908 0.94366 1.21805 0.98529 0.95406 0.95513 1.22577 0.97450 0.97169 0.98630 1.22545 0.99347 0.96986 0.97849 1.22344 0.97413 0.94725 1.01336 1.22181 0.95853 0.97154 1.00146 0.92848 1.00060 0.99957 0.88165 0.88363 0.74975 0.96020 0.90630 0.75688 0.89080 0.89929 0.92501 0.90973 0.93743 0.92313 0.91234 0.91201 0.91069 0.91773 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.25 13.29 21.45 0.28 -59.96 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.05 2.59 4.26 29.85 0.13 2.72 16 10 C -0.12 -5.07 5.64 29.85 0.17 -4.90 16 11 C 0.51 20.41 7.79 87.65 0.68 21.09 16 12 O -0.59 -29.33 15.64 -3.02 -0.05 -29.38 16 13 N -0.70 -20.06 3.36 -442.55 -1.49 -21.55 16 14 C 0.14 3.48 2.37 44.99 0.11 3.59 16 15 H 0.08 2.22 7.58 -2.39 -0.02 2.21 16 16 C 0.07 1.56 6.85 71.98 0.49 2.06 16 17 O -0.57 -11.25 12.83 -148.98 -1.91 -13.16 16 18 C -0.10 -1.73 3.79 30.60 0.12 -1.62 16 19 C -0.09 -1.74 2.93 -10.07 -0.03 -1.77 16 20 C -0.12 -2.47 4.63 31.67 0.15 -2.32 16 21 C -0.13 -2.31 6.91 31.88 0.22 -2.09 16 22 C -0.12 -1.73 6.83 31.67 0.22 -1.52 16 23 C -0.12 -1.69 6.46 31.32 0.20 -1.49 16 24 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 25 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 26 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 27 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 29 H 0.41 9.78 6.26 -92.71 -0.58 9.20 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.39 4.52 9.12 -74.06 -0.68 3.85 16 33 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.44 7.59 -2.39 -0.02 1.42 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.36 5.93 -2.39 -0.01 1.34 16 37 H 0.04 1.14 7.82 -2.39 -0.02 1.12 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.94 7.67 -2.39 -0.02 0.92 16 Total: -1.00 -76.91 342.76 1.75 -75.16 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.27 Total: 19.53 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 3.15 Total: -17.52 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.20 Total: -81.51 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.96 Total: -42.54 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.91 1.75 -75.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360559652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.807 kcal (2) G-P(sol) polarization free energy of solvation -76.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds