Wall clock time and date at job start Mon Mar 30 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99886 * 2 1 4 4 H 1.48505 * 109.46835 * 240.00209 * 3 2 1 5 5 H 1.48509 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47492 * 120.00115 * 3 2 1 7 7 C 1.37875 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46982 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00227 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99799 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99688 * 180.02562 * 13 11 10 15 15 H 1.08990 * 109.47427 * 35.00063 * 14 13 11 16 16 C 1.53002 * 109.47102 * 274.99602 * 14 13 11 17 17 O 1.42897 * 109.47325 * 295.00584 * 16 14 13 18 18 C 1.53000 * 109.46901 * 155.00173 * 14 13 11 19 19 C 1.52997 * 109.47060 * 294.99627 * 18 14 13 20 20 C 1.54271 * 110.03098 * 292.16996 * 19 18 14 21 21 C 1.54894 * 104.19361 * 217.10075 * 20 19 18 22 22 C 1.54890 * 102.74813 * 37.94443 * 21 20 19 23 23 C 1.53870 * 110.03686 * 175.00311 * 19 18 14 24 24 H 0.97008 * 120.00550 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47366 * 59.99892 * 9 7 2 26 26 H 1.08997 * 109.47322 * 299.99883 * 9 7 2 27 27 H 1.08995 * 109.46885 * 59.99932 * 10 9 7 28 28 H 1.08996 * 109.46959 * 299.99804 * 10 9 7 29 29 H 0.96993 * 120.00319 * 0.02562 * 13 11 10 30 30 H 1.08998 * 109.46841 * 55.00115 * 16 14 13 31 31 H 1.08999 * 109.47497 * 175.00175 * 16 14 13 32 32 H 0.96695 * 114.00413 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.47398 * 54.99796 * 18 14 13 34 34 H 1.09001 * 109.47194 * 174.99977 * 18 14 13 35 35 H 1.09000 * 110.01726 * 53.60803 * 19 18 14 36 36 H 1.08994 * 110.48979 * 335.78043 * 20 19 18 37 37 H 1.08998 * 110.48413 * 98.43100 * 20 19 18 38 38 H 1.08998 * 110.76076 * 279.63003 * 21 20 19 39 39 H 1.09001 * 110.91425 * 156.32986 * 21 20 19 40 40 H 1.09000 * 110.48648 * 203.37650 * 22 21 20 41 41 H 1.09002 * 110.60047 * 80.78426 * 22 21 20 42 42 H 1.08995 * 110.03364 * 238.57226 * 23 19 18 43 43 H 1.09004 * 110.02692 * 359.94946 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9672 -0.0010 13 7 2.1659 -6.1343 0.0003 14 6 1.4333 -7.4031 -0.0009 15 1 0.5234 -7.2967 -0.5912 16 6 1.0679 -7.7823 1.4356 17 8 2.2613 -8.0354 2.1798 18 6 2.3113 -8.4982 -0.6098 19 6 2.5736 -8.1810 -2.0834 20 6 1.2656 -8.3057 -2.8918 21 6 1.7123 -8.9108 -4.2459 22 6 2.8113 -9.9177 -3.8244 23 6 3.5563 -9.2058 -2.6764 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 3.1358 -6.1343 0.0014 30 1 0.5178 -6.9633 1.8989 31 1 0.4474 -8.6784 1.4283 32 1 2.1052 -8.2824 3.1015 33 1 3.2592 -8.5441 -0.0736 34 1 1.8019 -9.4585 -0.5301 35 1 2.9796 -7.1742 -2.1817 36 1 0.5675 -8.9736 -2.3873 37 1 0.8153 -7.3246 -3.0424 38 1 2.1242 -8.1395 -4.8966 39 1 0.8844 -9.4247 -4.7344 40 1 3.4888 -10.1129 -4.6557 41 1 2.3647 -10.8471 -3.4709 42 1 4.4388 -8.6964 -3.0633 43 1 3.8470 -9.9287 -1.9141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360559653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:57 Heat of formation + Delta-G solvation = -128.117732 kcal Electronic energy + Delta-G solvation = -21019.458775 eV Core-core repulsion = 17869.888015 eV Total energy + Delta-G solvation = -3149.570760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69958 -38.32411 -36.94045 -34.55210 -33.40120 -31.64608 -30.66144 -28.91891 -28.51261 -25.59913 -24.88359 -22.17440 -21.10106 -20.35758 -19.62742 -19.58425 -17.53155 -16.80485 -16.15460 -15.75281 -15.49585 -15.12581 -14.80180 -14.41328 -14.19528 -14.06667 -13.45828 -13.38889 -12.95994 -12.48237 -12.26396 -12.07453 -11.81657 -11.75245 -11.25582 -11.13544 -11.11890 -10.88852 -10.80168 -10.66247 -10.60162 -10.58786 -10.46979 -10.01830 -9.90456 -9.61841 -9.13309 -8.94231 -8.66999 -8.28766 -5.93206 -3.97419 3.32106 3.36437 3.40739 3.42521 3.63432 4.28666 4.39703 4.50062 4.50910 4.56642 4.88630 5.07925 5.19407 5.32122 5.32935 5.41572 5.43937 5.48928 5.53349 5.54258 5.60519 5.69147 5.75187 5.80523 5.84474 5.92960 6.03506 6.10774 6.18260 6.24481 6.29269 6.32267 6.37687 6.86675 6.95648 7.55103 7.77434 7.90511 8.01419 8.10729 8.42625 8.86647 9.11317 9.65872 11.17713 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.003864 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.133941 B = 7244.212335 C = 7953.702943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.540 6.540 13 N -0.729 5.729 14 C 0.147 3.853 15 H 0.097 0.903 16 C 0.062 3.938 17 O -0.569 6.569 18 C -0.111 4.111 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.398 0.602 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.375 0.625 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -21.961 -2.626 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.416 6.416 13 N -0.382 5.382 14 C 0.042 3.958 15 H 0.115 0.885 16 C -0.017 4.017 17 O -0.373 6.373 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.159 4.159 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.232 0.768 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.396 -21.679 -3.209 22.570 hybrid contribution 0.592 0.780 0.614 1.156 sum 5.989 -20.899 -2.596 21.894 Atomic orbital electron populations 1.69987 1.06050 1.26639 1.50239 1.25018 0.94816 0.99181 0.95335 0.86660 0.79551 0.83211 0.78545 1.20257 1.21301 1.20259 1.21204 0.92901 0.91081 1.51351 0.92686 1.18877 0.93159 0.89380 0.98513 1.21853 1.00693 0.92103 1.02394 1.21541 0.88628 0.85773 0.74163 1.90650 1.14469 1.87717 1.48778 1.46160 1.10031 1.04944 1.77108 1.20983 0.96890 0.84234 0.93698 0.88477 1.22693 0.86760 0.99078 0.93194 1.86450 1.32123 1.92082 1.26691 1.21871 1.00694 0.97556 0.94767 1.21819 0.95613 0.99649 0.94225 1.22467 0.96999 1.01128 0.95350 1.22494 0.98134 0.98365 0.97336 1.22349 0.97613 0.98295 0.97924 1.22213 0.98101 0.97879 0.97616 0.92935 0.95885 0.95923 0.90344 0.90383 0.76797 0.92868 0.93427 0.77889 0.90647 0.91025 0.90581 0.91651 0.91439 0.91570 0.91853 0.92069 0.91908 0.91970 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 11 C 0.51 9.95 7.79 -10.99 -0.09 9.87 16 12 O -0.54 -12.69 15.64 5.56 0.09 -12.60 16 13 N -0.73 -10.62 4.39 -53.80 -0.24 -10.86 16 14 C 0.15 1.88 2.29 -67.93 -0.16 1.72 16 15 H 0.10 1.40 6.80 -51.93 -0.35 1.04 16 16 C 0.06 0.74 6.85 37.16 0.25 1.00 16 17 O -0.57 -6.27 12.83 -35.23 -0.45 -6.72 16 18 C -0.11 -1.11 3.60 -26.73 -0.10 -1.21 16 19 C -0.09 -0.95 2.87 -89.50 -0.26 -1.21 16 20 C -0.12 -1.26 5.46 -25.07 -0.14 -1.40 16 21 C -0.13 -1.14 6.91 -24.74 -0.17 -1.32 16 22 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 23 C -0.12 -1.04 6.46 -25.62 -0.17 -1.21 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.40 5.00 8.60 -40.82 -0.35 4.65 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.37 2.63 9.12 45.56 0.42 3.05 16 33 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 34 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 35 H 0.08 0.86 7.62 -51.93 -0.40 0.47 16 36 H 0.06 0.64 7.76 -51.93 -0.40 0.24 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -34.11 347.51 -8.23 -42.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.91 Total: 3.49 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.67 Total: -10.78 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.50 Total: -37.85 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.36 Total: -19.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.11 -8.23 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360559653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.772 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds