Wall clock time and date at job start Mon Mar 30 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99886 * 2 1 4 4 H 1.48505 * 109.46835 * 240.00209 * 3 2 1 5 5 H 1.48509 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47492 * 120.00115 * 3 2 1 7 7 C 1.37875 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46982 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00227 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99799 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99688 * 180.02562 * 13 11 10 15 15 H 1.08990 * 109.47427 * 35.00063 * 14 13 11 16 16 C 1.53002 * 109.47102 * 274.99602 * 14 13 11 17 17 O 1.42897 * 109.47325 * 295.00584 * 16 14 13 18 18 C 1.53000 * 109.46901 * 155.00173 * 14 13 11 19 19 C 1.52997 * 109.47060 * 294.99627 * 18 14 13 20 20 C 1.54271 * 110.03098 * 292.16996 * 19 18 14 21 21 C 1.54894 * 104.19361 * 217.10075 * 20 19 18 22 22 C 1.54890 * 102.74813 * 37.94443 * 21 20 19 23 23 C 1.53870 * 110.03686 * 175.00311 * 19 18 14 24 24 H 0.97008 * 120.00550 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47366 * 59.99892 * 9 7 2 26 26 H 1.08997 * 109.47322 * 299.99883 * 9 7 2 27 27 H 1.08995 * 109.46885 * 59.99932 * 10 9 7 28 28 H 1.08996 * 109.46959 * 299.99804 * 10 9 7 29 29 H 0.96993 * 120.00319 * 0.02562 * 13 11 10 30 30 H 1.08998 * 109.46841 * 55.00115 * 16 14 13 31 31 H 1.08999 * 109.47497 * 175.00175 * 16 14 13 32 32 H 0.96695 * 114.00413 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.47398 * 54.99796 * 18 14 13 34 34 H 1.09001 * 109.47194 * 174.99977 * 18 14 13 35 35 H 1.09000 * 110.01726 * 53.60803 * 19 18 14 36 36 H 1.08994 * 110.48979 * 335.78043 * 20 19 18 37 37 H 1.08998 * 110.48413 * 98.43100 * 20 19 18 38 38 H 1.08998 * 110.76076 * 279.63003 * 21 20 19 39 39 H 1.09001 * 110.91425 * 156.32986 * 21 20 19 40 40 H 1.09000 * 110.48648 * 203.37650 * 22 21 20 41 41 H 1.09002 * 110.60047 * 80.78426 * 22 21 20 42 42 H 1.08995 * 110.03364 * 238.57226 * 23 19 18 43 43 H 1.09004 * 110.02692 * 359.94946 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9672 -0.0010 13 7 2.1659 -6.1343 0.0003 14 6 1.4333 -7.4031 -0.0009 15 1 0.5234 -7.2967 -0.5912 16 6 1.0679 -7.7823 1.4356 17 8 2.2613 -8.0354 2.1798 18 6 2.3113 -8.4982 -0.6098 19 6 2.5736 -8.1810 -2.0834 20 6 1.2656 -8.3057 -2.8918 21 6 1.7123 -8.9108 -4.2459 22 6 2.8113 -9.9177 -3.8244 23 6 3.5563 -9.2058 -2.6764 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 3.1358 -6.1343 0.0014 30 1 0.5178 -6.9633 1.8989 31 1 0.4474 -8.6784 1.4283 32 1 2.1052 -8.2824 3.1015 33 1 3.2592 -8.5441 -0.0736 34 1 1.8019 -9.4585 -0.5301 35 1 2.9796 -7.1742 -2.1817 36 1 0.5675 -8.9736 -2.3873 37 1 0.8153 -7.3246 -3.0424 38 1 2.1242 -8.1395 -4.8966 39 1 0.8844 -9.4247 -4.7344 40 1 3.4888 -10.1129 -4.6557 41 1 2.3647 -10.8471 -3.4709 42 1 4.4388 -8.6964 -3.0633 43 1 3.8470 -9.9287 -1.9141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360559653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:57 Heat of formation + Delta-G solvation = -152.534730 kcal Electronic energy + Delta-G solvation = -21020.517576 eV Core-core repulsion = 17869.888015 eV Total energy + Delta-G solvation = -3150.629560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00711 -39.37656 -37.91457 -35.75797 -35.48620 -33.23971 -32.19633 -29.79602 -29.39980 -27.58872 -25.74721 -23.98475 -22.12438 -21.40642 -21.08211 -20.40946 -18.88482 -18.37185 -17.47265 -17.13411 -16.63421 -16.45597 -16.38580 -15.78007 -15.34444 -15.10908 -14.67173 -14.35574 -14.18454 -14.13423 -13.94508 -13.24001 -13.12411 -12.92688 -12.76964 -12.65869 -12.49022 -11.92852 -11.91627 -11.88264 -11.64466 -11.55555 -11.48004 -11.45806 -11.32310 -11.24616 -10.95454 -10.62177 -10.56368 -9.97757 -8.18038 -6.32357 1.41540 1.46293 1.54010 1.74816 2.28956 2.45690 3.14600 3.41037 3.57742 3.75764 3.79452 4.00094 4.14277 4.18513 4.37232 4.45072 4.51719 4.55003 4.57390 4.60700 4.66342 4.75918 4.78074 4.83527 4.91952 4.96884 5.07670 5.10956 5.17590 5.25964 5.29433 5.39407 5.47994 5.51604 5.57873 5.63092 5.63661 5.85134 6.17848 6.66287 6.85527 6.86394 7.37139 7.39621 8.94416 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.003864 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.133941 B = 7244.212335 C = 7953.702943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.045 3.955 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.705 5.705 14 C 0.141 3.859 15 H 0.078 0.922 16 C 0.068 3.932 17 O -0.574 6.574 18 C -0.097 4.097 19 C -0.095 4.095 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.263 0.737 25 H -0.018 1.018 26 H -0.019 1.019 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.412 0.588 30 H 0.021 0.979 31 H 0.075 0.925 32 H 0.394 0.606 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.837 -23.282 -2.552 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.007 3.993 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.470 6.470 13 N -0.358 5.358 14 C 0.036 3.964 15 H 0.096 0.904 16 C -0.011 4.011 17 O -0.382 6.382 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.248 0.752 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.117 -23.054 -3.120 24.640 hybrid contribution -0.266 1.124 0.605 1.304 sum 7.851 -21.931 -2.515 23.429 Atomic orbital electron populations 1.70170 1.08301 1.27880 1.51369 1.26134 0.95730 1.03921 0.94559 0.85373 0.78071 0.77317 0.79473 1.18706 1.21213 1.18700 1.21691 0.93949 0.91708 1.51001 0.90763 1.18657 0.93627 0.92399 0.94608 1.21625 0.99356 0.90587 1.04461 1.21246 0.87823 0.86764 0.74104 1.90636 1.16464 1.88385 1.51487 1.45904 1.10673 1.04375 1.74799 1.21183 0.96671 0.83866 0.94649 0.90438 1.22514 0.87177 0.99145 0.92244 1.86392 1.31486 1.92092 1.28231 1.21792 1.00385 0.96919 0.94318 1.21804 0.95702 0.99454 0.94374 1.22468 0.97344 0.99874 0.96561 1.22503 0.98871 0.98568 0.96471 1.22344 0.97231 0.98139 0.98070 1.22187 0.97612 0.97613 0.98014 0.92832 0.99968 1.00016 0.88241 0.88116 0.75152 0.96054 0.90683 0.75687 0.89954 0.89204 0.92174 0.91029 0.94223 0.92271 0.91173 0.91153 0.90948 0.91813 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.26 13.29 21.45 0.28 -59.98 16 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.56 4.26 29.85 0.13 2.69 16 10 C -0.12 -5.05 5.64 29.85 0.17 -4.89 16 11 C 0.51 20.47 7.79 87.66 0.68 21.15 16 12 O -0.59 -29.29 15.64 -3.03 -0.05 -29.33 16 13 N -0.71 -20.18 4.39 -442.53 -1.94 -22.12 16 14 C 0.14 3.49 2.29 44.99 0.10 3.60 16 15 H 0.08 2.28 6.80 -2.39 -0.02 2.26 16 16 C 0.07 1.56 6.85 71.98 0.49 2.05 16 17 O -0.57 -11.30 12.83 -148.98 -1.91 -13.21 16 18 C -0.10 -1.72 3.60 30.59 0.11 -1.61 16 19 C -0.09 -1.76 2.87 -10.07 -0.03 -1.79 16 20 C -0.12 -2.54 5.46 31.67 0.17 -2.37 16 21 C -0.13 -2.17 6.91 31.89 0.22 -1.95 16 22 C -0.12 -1.67 6.83 31.67 0.22 -1.45 16 23 C -0.12 -1.72 6.46 31.32 0.20 -1.51 16 24 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 25 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 26 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 27 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 28 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.41 9.61 8.60 -92.71 -0.80 8.81 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.39 4.55 9.12 -74.06 -0.68 3.88 16 33 H 0.08 1.41 7.73 -2.39 -0.02 1.40 16 34 H 0.09 1.34 8.00 -2.39 -0.02 1.32 16 35 H 0.06 1.31 7.62 -2.39 -0.02 1.29 16 36 H 0.07 1.34 7.76 -2.39 -0.02 1.33 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 0.96 7.67 -2.38 -0.02 0.94 16 Total: -1.00 -77.16 347.51 1.08 -76.08 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.49 Total: 19.16 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 3.16 Total: -17.50 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.66 Total: -82.10 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.96 Total: -42.54 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.16 1.08 -76.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360559653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.457 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds