Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48499 * 109.46656 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46879 * 299.99304 * 3 2 1 6 6 H 1.48496 * 109.47294 * 59.99851 * 3 2 1 7 7 C 1.37867 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47488 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47488 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99594 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00139 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47246 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46741 * 305.00107 * 15 14 13 17 17 C 1.52997 * 109.47024 * 64.99519 * 15 14 13 18 18 C 1.53001 * 109.47219 * 60.00453 * 17 15 14 19 19 C 1.53001 * 109.47349 * 59.99513 * 18 17 15 20 20 C 1.53000 * 109.47194 * 300.00744 * 19 18 17 21 21 H 1.09002 * 109.46818 * 299.99696 * 20 19 18 22 22 C 1.52997 * 109.47341 * 179.97438 * 20 19 18 23 23 O 1.42905 * 109.47264 * 64.99692 * 22 20 19 24 24 C 1.52997 * 109.47236 * 184.99996 * 15 14 13 25 25 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46711 * 59.99470 * 9 7 2 27 27 H 1.09002 * 109.47011 * 299.99774 * 9 7 2 28 28 H 1.09001 * 109.47430 * 59.99784 * 10 9 7 29 29 H 1.09002 * 109.47222 * 300.00149 * 10 9 7 30 30 H 0.97001 * 120.00352 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47350 * 60.00263 * 14 13 11 32 32 H 1.09002 * 109.47062 * 300.00090 * 14 13 11 33 33 H 1.09002 * 109.47016 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.47400 * 300.00455 * 17 15 14 35 35 H 1.08995 * 109.47837 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.46791 * 300.00290 * 18 17 15 37 37 H 1.08994 * 109.47704 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.46733 * 59.99906 * 19 18 17 39 39 H 1.09001 * 109.47289 * 304.99525 * 22 20 19 40 40 H 1.09004 * 109.47261 * 184.99781 * 22 20 19 41 41 H 0.96691 * 114.00079 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.46746 * 180.02562 * 24 15 14 43 43 H 1.08993 * 109.47322 * 59.99842 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9671 0.0011 13 7 2.1658 -6.1343 0.0008 14 6 1.4333 -7.4030 0.0008 15 6 2.4276 -8.5660 0.0009 16 1 3.1117 -8.4591 -0.8409 17 6 3.2223 -8.5573 1.3082 18 6 2.2621 -8.7073 2.4899 19 6 1.5012 -10.0287 2.3643 20 6 0.7065 -10.0374 1.0569 21 1 -0.0018 -9.2089 1.0569 22 6 -0.0539 -11.3591 0.9310 23 8 -1.0324 -11.4465 1.9688 24 6 1.6668 -9.8874 -0.1247 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 3.1358 -6.1343 -0.0003 31 1 0.8064 -7.4607 -0.8890 32 1 0.8069 -7.4609 0.8910 33 1 3.9310 -9.3855 1.3081 34 1 3.7643 -7.6158 1.3978 35 1 2.8282 -8.7016 3.4213 36 1 1.5537 -7.8788 2.4898 37 1 0.8168 -10.1354 3.2059 38 1 2.2096 -10.8572 2.3643 39 1 0.6454 -12.1905 1.0200 40 1 -0.5485 -11.4027 -0.0394 41 1 -1.5537 -12.2606 1.9503 42 1 2.3751 -10.7159 -0.1242 43 1 1.1006 -9.8936 -1.0561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360637459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -129.751121 kcal Electronic energy + Delta-G solvation = -20788.122519 eV Core-core repulsion = 17638.480930 eV Total energy + Delta-G solvation = -3149.641589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03887 -38.65866 -36.84488 -34.23171 -33.40008 -31.70910 -31.38628 -30.66271 -26.66665 -25.85378 -24.81654 -22.58057 -21.56153 -21.26281 -19.61897 -18.92914 -17.52180 -16.78627 -16.05944 -15.66568 -15.55587 -15.21293 -15.06082 -14.46558 -14.38507 -14.09605 -13.63644 -13.18976 -12.91078 -12.83503 -12.42960 -12.30093 -12.13526 -11.93164 -11.61268 -11.33943 -11.21040 -11.10666 -10.91973 -10.56403 -10.48705 -10.36815 -10.22103 -10.09295 -9.91717 -9.62107 -9.12148 -8.94590 -8.65492 -8.29094 -5.93145 -3.97371 3.34034 3.34818 3.41217 3.44602 3.64648 3.89669 4.41111 4.49159 4.51420 4.58015 4.76284 4.98360 5.02015 5.18538 5.21951 5.25739 5.31753 5.35710 5.41736 5.44929 5.46913 5.58977 5.73058 5.79050 5.87138 5.94666 6.01771 6.05742 6.12947 6.21170 6.28217 6.29749 6.35070 6.82722 6.94881 7.34577 7.78249 7.90847 7.97660 8.11123 8.42549 8.86856 9.11854 9.66035 11.17849 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.003080 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.077324 B = 9089.879138 C = 9365.402555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.536 6.536 13 N -0.743 5.743 14 C 0.119 3.881 15 C -0.097 4.097 16 H 0.078 0.922 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.107 4.107 20 C -0.094 4.094 21 H 0.084 0.916 22 C 0.080 3.920 23 O -0.572 6.572 24 C -0.103 4.103 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.377 0.623 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -25.531 1.523 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.412 6.412 13 N -0.397 5.397 14 C -0.005 4.005 15 C -0.116 4.116 16 H 0.096 0.904 17 C -0.152 4.152 18 C -0.163 4.163 19 C -0.145 4.145 20 C -0.112 4.112 21 H 0.102 0.898 22 C 0.002 3.998 23 O -0.377 6.377 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.229 0.771 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.223 0.777 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.395 -24.816 1.676 25.451 hybrid contribution 0.695 0.303 -0.226 0.791 sum 6.090 -24.513 1.449 25.300 Atomic orbital electron populations 1.70016 1.06045 1.26417 1.50365 1.25033 0.94826 0.99227 0.95374 0.86539 0.79999 0.83883 0.77564 1.19767 1.21035 1.21031 1.21267 0.92949 0.91042 1.51133 0.92584 1.18899 0.93203 0.89408 0.98604 1.21854 1.00681 0.92105 1.02361 1.21539 0.88652 0.85702 0.74505 1.90669 1.14510 1.87700 1.48271 1.46212 1.09921 1.05656 1.77940 1.21429 0.94398 0.82424 1.02219 1.21339 0.97279 0.94350 0.98599 0.90379 1.21566 0.97661 1.01860 0.94091 1.21605 0.98666 0.98115 0.97898 1.21493 0.98397 0.97340 0.97232 1.21237 0.97012 0.97294 0.95693 0.89779 1.22241 0.90180 0.97506 0.89824 1.86512 1.52505 1.45169 1.53477 1.21462 0.97966 0.96942 0.97735 0.93033 0.95859 0.95832 0.90356 0.90358 0.77094 0.92147 0.91181 0.91898 0.91665 0.91993 0.91231 0.91367 0.92458 0.93886 0.93718 0.77674 0.91418 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.70 5.64 -27.89 -0.16 -2.86 16 11 C 0.51 10.05 7.83 -10.99 -0.09 9.97 16 12 O -0.54 -13.09 15.98 5.55 0.09 -13.01 16 13 N -0.74 -10.61 5.28 -60.29 -0.32 -10.93 16 14 C 0.12 1.52 4.36 -4.04 -0.02 1.50 16 15 C -0.10 -0.86 2.70 -90.62 -0.24 -1.11 16 16 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.11 -0.97 5.32 -26.73 -0.14 -1.12 16 18 C -0.13 -1.21 5.65 -26.73 -0.15 -1.36 16 19 C -0.11 -0.98 5.10 -26.73 -0.14 -1.12 16 20 C -0.09 -0.86 2.15 -90.62 -0.20 -1.05 16 21 H 0.08 0.96 6.54 -51.93 -0.34 0.62 16 22 C 0.08 0.63 6.43 37.16 0.24 0.87 16 23 O -0.57 -5.14 13.20 -35.23 -0.46 -5.61 16 24 C -0.10 -0.81 4.73 -26.73 -0.13 -0.93 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.40 4.45 7.66 -40.82 -0.31 4.13 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.00 4.82 -51.93 -0.25 0.75 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.56 7.18 -51.93 -0.37 0.19 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.82 6.32 -51.93 -0.33 0.49 16 37 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.38 1.64 9.12 45.56 0.42 2.06 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -35.58 338.63 -8.05 -43.63 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.63 Total: 1.22 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.55 Total: -10.21 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.42 Total: -38.02 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.38 Total: -18.62 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.58 -8.05 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360637459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.121 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds