Wall clock time and date at job start Mon Mar 30 2020 01:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48499 * 109.46656 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46879 * 299.99304 * 3 2 1 6 6 H 1.48496 * 109.47294 * 59.99851 * 3 2 1 7 7 C 1.37867 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47488 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47488 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99594 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00139 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47246 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46741 * 305.00107 * 15 14 13 17 17 C 1.52997 * 109.47024 * 64.99519 * 15 14 13 18 18 C 1.53001 * 109.47219 * 60.00453 * 17 15 14 19 19 C 1.53001 * 109.47349 * 59.99513 * 18 17 15 20 20 C 1.53000 * 109.47194 * 300.00744 * 19 18 17 21 21 H 1.09002 * 109.46818 * 299.99696 * 20 19 18 22 22 C 1.52997 * 109.47341 * 179.97438 * 20 19 18 23 23 O 1.42905 * 109.47264 * 64.99692 * 22 20 19 24 24 C 1.52997 * 109.47236 * 184.99996 * 15 14 13 25 25 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46711 * 59.99470 * 9 7 2 27 27 H 1.09002 * 109.47011 * 299.99774 * 9 7 2 28 28 H 1.09001 * 109.47430 * 59.99784 * 10 9 7 29 29 H 1.09002 * 109.47222 * 300.00149 * 10 9 7 30 30 H 0.97001 * 120.00352 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47350 * 60.00263 * 14 13 11 32 32 H 1.09002 * 109.47062 * 300.00090 * 14 13 11 33 33 H 1.09002 * 109.47016 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.47400 * 300.00455 * 17 15 14 35 35 H 1.08995 * 109.47837 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.46791 * 300.00290 * 18 17 15 37 37 H 1.08994 * 109.47704 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.46733 * 59.99906 * 19 18 17 39 39 H 1.09001 * 109.47289 * 304.99525 * 22 20 19 40 40 H 1.09004 * 109.47261 * 184.99781 * 22 20 19 41 41 H 0.96691 * 114.00079 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.46746 * 180.02562 * 24 15 14 43 43 H 1.08993 * 109.47322 * 59.99842 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9671 0.0011 13 7 2.1658 -6.1343 0.0008 14 6 1.4333 -7.4030 0.0008 15 6 2.4276 -8.5660 0.0009 16 1 3.1117 -8.4591 -0.8409 17 6 3.2223 -8.5573 1.3082 18 6 2.2621 -8.7073 2.4899 19 6 1.5012 -10.0287 2.3643 20 6 0.7065 -10.0374 1.0569 21 1 -0.0018 -9.2089 1.0569 22 6 -0.0539 -11.3591 0.9310 23 8 -1.0324 -11.4465 1.9688 24 6 1.6668 -9.8874 -0.1247 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 3.1358 -6.1343 -0.0003 31 1 0.8064 -7.4607 -0.8890 32 1 0.8069 -7.4609 0.8910 33 1 3.9310 -9.3855 1.3081 34 1 3.7643 -7.6158 1.3978 35 1 2.8282 -8.7016 3.4213 36 1 1.5537 -7.8788 2.4898 37 1 0.8168 -10.1354 3.2059 38 1 2.2096 -10.8572 2.3643 39 1 0.6454 -12.1905 1.0200 40 1 -0.5485 -11.4027 -0.0394 41 1 -1.5537 -12.2606 1.9503 42 1 2.3751 -10.7159 -0.1242 43 1 1.1006 -9.8936 -1.0561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360637459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:45 Heat of formation + Delta-G solvation = -156.641158 kcal Electronic energy + Delta-G solvation = -20789.288559 eV Core-core repulsion = 17638.480930 eV Total energy + Delta-G solvation = -3150.807628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08631 -39.95430 -37.57543 -35.63970 -35.39243 -33.10570 -32.39169 -31.94525 -28.27975 -26.67863 -26.22912 -23.46967 -23.34207 -22.00037 -21.16772 -19.81592 -18.79658 -18.15848 -17.41796 -16.92257 -16.83469 -16.42520 -16.33848 -15.90840 -15.50534 -14.94132 -14.89322 -14.32341 -14.23173 -14.06251 -13.79027 -13.47815 -13.23577 -13.10340 -12.87976 -12.80259 -12.47091 -12.40266 -12.17276 -11.92738 -11.90754 -11.63653 -11.28621 -11.24275 -11.03873 -10.96759 -10.74590 -10.69681 -10.58254 -9.99085 -8.18130 -6.32457 1.41951 1.43774 1.57078 1.73684 2.30092 2.46100 3.14779 3.32420 3.69371 3.78721 3.87434 4.00516 4.11204 4.25086 4.37153 4.47094 4.49395 4.51687 4.55269 4.58479 4.60838 4.68391 4.72053 4.79597 4.87724 4.99502 5.07540 5.11298 5.18834 5.28946 5.29553 5.40713 5.46237 5.49579 5.55891 5.59001 5.62938 5.85543 6.17504 6.65121 6.86475 6.93794 7.37179 7.39267 8.94896 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.003080 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.077324 B = 9089.879138 C = 9365.402555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.507 3.493 12 O -0.594 6.594 13 N -0.714 5.714 14 C 0.118 3.882 15 C -0.087 4.087 16 H 0.100 0.900 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.102 4.102 20 C -0.098 4.098 21 H 0.048 0.952 22 C 0.079 3.921 23 O -0.598 6.598 24 C -0.098 4.098 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.020 1.020 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.415 0.585 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.395 0.605 42 H 0.095 0.905 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.710 -26.836 1.041 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.296 3.704 12 O -0.475 6.475 13 N -0.368 5.368 14 C -0.006 4.006 15 C -0.106 4.106 16 H 0.118 0.882 17 C -0.149 4.149 18 C -0.164 4.164 19 C -0.139 4.139 20 C -0.116 4.116 21 H 0.066 0.934 22 C 0.002 3.998 23 O -0.406 6.406 24 C -0.136 4.136 25 H 0.071 0.929 26 H -0.001 1.001 27 H -0.002 1.002 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.253 0.747 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.244 0.756 42 H 0.114 0.886 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.967 -26.182 1.193 27.701 hybrid contribution -0.460 0.634 -0.043 0.784 sum 8.507 -25.548 1.150 26.952 Atomic orbital electron populations 1.70199 1.08376 1.27736 1.51585 1.26177 0.95749 1.04073 0.94658 0.85243 0.79317 0.77947 0.77544 1.17486 1.20585 1.20661 1.21748 0.94028 0.91550 1.50604 0.90489 1.18695 0.93751 0.92641 0.94562 1.21631 0.99261 0.90111 1.04844 1.21377 0.87800 0.86991 0.74269 1.90655 1.16928 1.88509 1.51367 1.45906 1.10895 1.04718 1.75290 1.21556 0.95360 0.82944 1.00690 1.21336 0.96556 0.92879 0.99804 0.88203 1.21581 0.97460 1.03006 0.92803 1.21597 0.98454 0.97281 0.99102 1.21437 0.98303 0.97665 0.96528 1.21246 0.96917 0.96961 0.96493 0.93354 1.22293 0.90411 0.97286 0.89819 1.86469 1.53241 1.46842 1.54091 1.21462 0.98070 0.97018 0.97039 0.92875 1.00054 1.00179 0.87815 0.87624 0.74703 0.93479 0.93179 0.89312 0.91579 0.91431 0.94441 0.93361 0.90374 0.91663 0.93051 0.75573 0.88639 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.70 13.29 21.44 0.28 -60.41 16 2 C -0.01 -0.56 5.46 84.65 0.46 -0.09 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.92 16 4 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 9 C 0.04 2.36 4.26 29.85 0.13 2.49 16 10 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 11 C 0.51 20.46 7.83 87.66 0.69 21.14 16 12 O -0.59 -30.78 15.98 -3.05 -0.05 -30.83 16 13 N -0.71 -19.78 5.28 -463.05 -2.45 -22.23 16 14 C 0.12 2.99 4.36 86.38 0.38 3.37 16 15 C -0.09 -1.33 2.70 -10.79 -0.03 -1.36 16 16 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 17 C -0.11 -1.57 5.32 30.59 0.16 -1.41 16 18 C -0.13 -2.35 5.65 30.59 0.17 -2.17 16 19 C -0.10 -1.76 5.10 30.59 0.16 -1.61 16 20 C -0.10 -1.71 2.15 -10.79 -0.02 -1.74 16 21 H 0.05 1.19 6.54 -2.39 -0.02 1.17 16 22 C 0.08 1.13 6.43 71.98 0.46 1.60 16 23 O -0.60 -10.57 13.20 -148.98 -1.97 -12.53 16 24 C -0.10 -1.28 4.73 30.59 0.14 -1.14 16 25 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 26 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 27 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 28 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.42 8.21 7.66 -92.71 -0.71 7.51 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.52 4.82 -2.39 -0.01 1.51 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.93 7.18 -2.39 -0.02 0.92 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.93 6.32 -2.39 -0.02 0.91 16 37 H 0.05 1.02 7.82 -2.39 -0.02 1.00 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.39 3.17 9.12 -74.06 -0.68 2.49 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -82.30 338.63 0.56 -81.74 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.39 Total: 14.12 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 3.10 Total: -16.78 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.16 Total: -82.64 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -2.01 Total: -43.36 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -82.30 0.56 -81.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360637459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.899 kcal (2) G-P(sol) polarization free energy of solvation -82.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds