Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00053 * 2 1 4 4 H 1.48497 * 109.47158 * 239.99882 * 3 2 1 5 5 H 1.48496 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46953 * 119.99763 * 3 2 1 7 7 C 1.37877 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99641 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46670 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46790 * 180.02562 * 11 10 9 13 13 C 1.47014 * 111.03913 * 52.24817 * 12 11 10 14 14 C 1.53095 * 109.29524 * 182.34971 * 13 12 11 15 15 O 1.43014 * 109.25788 * 303.17720 * 14 13 12 16 16 C 1.43008 * 113.73826 * 58.66981 * 15 14 13 17 17 C 1.47011 * 110.99833 * 175.90966 * 12 11 10 18 18 H 1.08996 * 109.50920 * 297.58266 * 17 12 11 19 19 C 1.53000 * 109.50733 * 57.66991 * 17 12 11 20 20 H 1.09000 * 110.27579 * 292.25809 * 19 17 12 21 21 C 1.54953 * 110.31032 * 54.34782 * 19 17 12 22 22 C 1.55301 * 100.94384 * 155.45770 * 21 19 17 23 23 C 1.54385 * 102.25337 * 325.86788 * 22 21 19 24 24 O 1.43242 * 107.58599 * 21.35325 * 23 22 21 25 25 H 0.97003 * 119.99782 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47383 * 59.99582 * 9 7 2 27 27 H 1.09000 * 109.46644 * 299.99464 * 9 7 2 28 28 H 1.08998 * 109.47170 * 59.99728 * 10 9 7 29 29 H 1.08993 * 109.47350 * 299.99756 * 10 9 7 30 30 H 1.08998 * 109.47322 * 60.00096 * 11 10 9 31 31 H 1.09000 * 109.47031 * 299.99778 * 11 10 9 32 32 H 1.09002 * 109.47161 * 62.41735 * 13 12 11 33 33 H 1.08999 * 109.54433 * 302.33190 * 13 12 11 34 34 H 1.08999 * 109.51029 * 183.23622 * 14 13 12 35 35 H 1.09005 * 109.54074 * 63.12938 * 14 13 12 36 36 H 1.09007 * 109.50395 * 181.39514 * 16 15 14 37 37 H 1.09003 * 109.54500 * 61.28791 * 16 15 14 38 38 H 1.08999 * 111.12336 * 273.37954 * 21 19 17 39 39 H 1.09001 * 111.12316 * 37.53350 * 21 19 17 40 40 H 1.09001 * 110.84571 * 84.05538 * 22 21 19 41 41 H 1.08998 * 110.84915 * 207.67304 * 22 21 19 42 42 H 1.09003 * 109.82803 * 261.84484 * 23 22 21 43 43 H 1.08996 * 109.90708 * 140.91682 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.4162 -5.9584 1.0867 14 6 4.4239 -7.1086 1.0145 15 8 3.7239 -8.3539 1.0809 16 6 2.7612 -8.5295 0.0380 17 6 1.7365 -7.3937 0.1003 18 1 1.1951 -7.4433 1.0450 19 6 0.7504 -7.5309 -1.0614 20 1 -0.0612 -6.8112 -0.9550 21 6 1.4793 -7.3235 -2.4130 22 6 0.5448 -8.1062 -3.3751 23 6 0.0545 -9.2672 -2.4833 24 8 0.2273 -8.8675 -1.1187 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.8532 -5.0451 -0.8886 31 1 0.8538 -5.0445 0.8914 32 1 2.9022 -5.9846 2.0475 33 1 3.9398 -5.0084 0.9799 34 1 5.1189 -7.0367 1.8511 35 1 4.9763 -7.0511 0.0766 36 1 2.2535 -9.4852 0.1685 37 1 3.2641 -8.5135 -0.9289 38 1 1.5210 -6.2672 -2.6787 39 1 2.4774 -7.7611 -2.3922 40 1 -0.2907 -7.4840 -3.6959 41 1 1.1003 -8.4842 -4.2334 42 1 0.6439 -10.1619 -2.6840 43 1 -0.9989 -9.4668 -2.6797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367585769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -96.256138 kcal Electronic energy + Delta-G solvation = -21743.689138 eV Core-core repulsion = 18595.500000 eV Total energy + Delta-G solvation = -3148.189138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38697 -38.69326 -36.25494 -33.67431 -32.38409 -31.97284 -31.15565 -28.51251 -27.58182 -25.42804 -24.31913 -22.50356 -21.98217 -21.69042 -20.01753 -19.43370 -17.17049 -16.68734 -16.12737 -15.74270 -15.63927 -15.30895 -15.03339 -14.61452 -14.37689 -14.17499 -13.83902 -13.59785 -13.27311 -12.55484 -12.35981 -12.18475 -11.81408 -11.73252 -11.54007 -11.38608 -11.29571 -10.98767 -10.83332 -10.75832 -10.62122 -10.47549 -10.41339 -9.78386 -9.64542 -9.41764 -9.30857 -9.07307 -8.36039 -8.18907 -6.01373 -4.03861 3.32193 3.36713 3.38890 3.46031 3.84297 4.20747 4.44853 4.45427 4.61114 4.79891 4.86848 5.03388 5.08620 5.16849 5.18527 5.25928 5.34337 5.37051 5.51137 5.58733 5.67775 5.68903 5.75274 5.76440 5.83621 5.85325 5.96327 6.02882 6.03622 6.17309 6.24410 6.61987 6.66676 6.91510 7.00848 7.12457 7.24862 7.26033 7.64807 7.79196 7.98156 8.40945 9.02909 9.60288 11.09981 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.004390 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.940791 B = 6376.773240 C = 7295.053402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.052 3.948 12 N -0.527 5.527 13 C 0.015 3.985 14 C 0.062 3.938 15 O -0.389 6.389 16 C 0.075 3.925 17 C 0.051 3.949 18 H 0.053 0.947 19 C 0.088 3.912 20 H 0.076 0.924 21 C -0.137 4.137 22 C -0.161 4.161 23 C 0.053 3.947 24 O -0.382 6.382 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -18.159 -3.734 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.075 4.075 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.015 4.015 15 O -0.307 6.307 16 C -0.002 4.002 17 C -0.058 4.058 18 H 0.071 0.929 19 C 0.031 3.969 20 H 0.094 0.906 21 C -0.174 4.174 22 C -0.198 4.198 23 C -0.024 4.024 24 O -0.301 6.301 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.930 -18.309 -3.860 19.120 hybrid contribution -0.192 1.388 0.362 1.447 sum 3.737 -16.921 -3.499 17.679 Atomic orbital electron populations 1.69957 1.06067 1.26705 1.50803 1.25022 0.94836 0.99242 0.95318 0.86660 0.79585 0.83149 0.78619 1.20231 1.21296 1.20256 1.21191 0.92963 0.91022 1.50656 0.92759 1.19057 0.93976 0.91320 0.97119 1.21742 0.99315 0.92803 1.00797 1.22396 0.94070 0.90614 1.00445 1.62297 1.16716 1.01181 1.45143 1.22858 0.95009 1.00411 0.92983 1.22711 0.93718 0.82896 1.02137 1.87964 1.54005 1.37484 1.51260 1.22639 0.88912 0.97761 0.90863 1.22237 0.94686 0.91432 0.97462 0.92912 1.22883 0.94758 0.84292 0.94990 0.90610 1.23188 0.99053 1.02267 0.92934 1.23176 1.00203 0.97419 0.99035 1.23093 1.00530 0.97264 0.81520 1.88358 1.85346 1.30961 1.25439 0.92956 0.96623 0.96812 0.93198 0.92499 0.90825 0.95139 0.94053 0.88270 0.88676 0.92409 0.88185 0.92472 0.89078 0.90032 0.90516 0.90143 0.91530 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.18 4.66 -26.73 -0.12 -2.30 16 11 C 0.05 0.87 4.56 -3.82 -0.02 0.86 16 12 N -0.53 -7.72 4.11 -226.34 -0.93 -8.65 16 13 C 0.02 0.21 5.13 -3.71 -0.02 0.19 16 14 C 0.06 0.76 7.01 37.21 0.26 1.02 16 15 O -0.39 -5.38 10.83 -35.23 -0.38 -5.76 16 16 C 0.08 0.95 5.86 37.21 0.22 1.17 16 17 C 0.05 0.70 2.12 -67.60 -0.14 0.56 16 18 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 19 C 0.09 1.13 2.66 -25.70 -0.07 1.06 16 20 H 0.08 1.05 6.97 -51.93 -0.36 0.69 16 21 C -0.14 -1.55 5.85 -24.48 -0.14 -1.69 16 22 C -0.16 -1.48 7.02 -24.79 -0.17 -1.66 16 23 C 0.05 0.51 7.79 37.88 0.30 0.80 16 24 O -0.38 -4.85 10.12 -35.23 -0.36 -5.20 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.98 6.27 -51.93 -0.33 0.65 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.23 6.16 -51.93 -0.32 0.91 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.40 6.07 -51.93 -0.32 1.09 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.22 7.63 -51.93 -0.40 0.83 16 37 H 0.06 0.69 6.27 -51.93 -0.33 0.36 16 38 H 0.09 1.12 7.70 -51.93 -0.40 0.72 16 39 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -30.26 328.40 -8.85 -39.11 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.38 Total: -1.93 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.47 Total: -12.93 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.19 Total: -34.78 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.74 Total: -10.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.26 -8.85 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367585769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.144 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds