Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00053 * 2 1 4 4 H 1.48497 * 109.47158 * 239.99882 * 3 2 1 5 5 H 1.48496 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46953 * 119.99763 * 3 2 1 7 7 C 1.37877 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99641 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46670 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46790 * 180.02562 * 11 10 9 13 13 C 1.47014 * 111.03913 * 52.24817 * 12 11 10 14 14 C 1.53095 * 109.29524 * 182.34971 * 13 12 11 15 15 O 1.43014 * 109.25788 * 303.17720 * 14 13 12 16 16 C 1.43008 * 113.73826 * 58.66981 * 15 14 13 17 17 C 1.47011 * 110.99833 * 175.90966 * 12 11 10 18 18 H 1.08996 * 109.50920 * 297.58266 * 17 12 11 19 19 C 1.53000 * 109.50733 * 57.66991 * 17 12 11 20 20 H 1.09000 * 110.27579 * 292.25809 * 19 17 12 21 21 C 1.54953 * 110.31032 * 54.34782 * 19 17 12 22 22 C 1.55301 * 100.94384 * 155.45770 * 21 19 17 23 23 C 1.54385 * 102.25337 * 325.86788 * 22 21 19 24 24 O 1.43242 * 107.58599 * 21.35325 * 23 22 21 25 25 H 0.97003 * 119.99782 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47383 * 59.99582 * 9 7 2 27 27 H 1.09000 * 109.46644 * 299.99464 * 9 7 2 28 28 H 1.08998 * 109.47170 * 59.99728 * 10 9 7 29 29 H 1.08993 * 109.47350 * 299.99756 * 10 9 7 30 30 H 1.08998 * 109.47322 * 60.00096 * 11 10 9 31 31 H 1.09000 * 109.47031 * 299.99778 * 11 10 9 32 32 H 1.09002 * 109.47161 * 62.41735 * 13 12 11 33 33 H 1.08999 * 109.54433 * 302.33190 * 13 12 11 34 34 H 1.08999 * 109.51029 * 183.23622 * 14 13 12 35 35 H 1.09005 * 109.54074 * 63.12938 * 14 13 12 36 36 H 1.09007 * 109.50395 * 181.39514 * 16 15 14 37 37 H 1.09003 * 109.54500 * 61.28791 * 16 15 14 38 38 H 1.08999 * 111.12336 * 273.37954 * 21 19 17 39 39 H 1.09001 * 111.12316 * 37.53350 * 21 19 17 40 40 H 1.09001 * 110.84571 * 84.05538 * 22 21 19 41 41 H 1.08998 * 110.84915 * 207.67304 * 22 21 19 42 42 H 1.09003 * 109.82803 * 261.84484 * 23 22 21 43 43 H 1.08996 * 109.90708 * 140.91682 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.4162 -5.9584 1.0867 14 6 4.4239 -7.1086 1.0145 15 8 3.7239 -8.3539 1.0809 16 6 2.7612 -8.5295 0.0380 17 6 1.7365 -7.3937 0.1003 18 1 1.1951 -7.4433 1.0450 19 6 0.7504 -7.5309 -1.0614 20 1 -0.0612 -6.8112 -0.9550 21 6 1.4793 -7.3235 -2.4130 22 6 0.5448 -8.1062 -3.3751 23 6 0.0545 -9.2672 -2.4833 24 8 0.2273 -8.8675 -1.1187 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.8532 -5.0451 -0.8886 31 1 0.8538 -5.0445 0.8914 32 1 2.9022 -5.9846 2.0475 33 1 3.9398 -5.0084 0.9799 34 1 5.1189 -7.0367 1.8511 35 1 4.9763 -7.0511 0.0766 36 1 2.2535 -9.4852 0.1685 37 1 3.2641 -8.5135 -0.9289 38 1 1.5210 -6.2672 -2.6787 39 1 2.4774 -7.7611 -2.3922 40 1 -0.2907 -7.4840 -3.6959 41 1 1.1003 -8.4842 -4.2334 42 1 0.6439 -10.1619 -2.6840 43 1 -0.9989 -9.4668 -2.6797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367585769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -116.177011 kcal Electronic energy + Delta-G solvation = -21744.552972 eV Core-core repulsion = 18595.500000 eV Total energy + Delta-G solvation = -3149.052971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43479 -39.67901 -37.55326 -35.54751 -33.71656 -32.99066 -32.61013 -29.77177 -28.83057 -27.06128 -25.34788 -24.20083 -23.05105 -22.53521 -21.66353 -20.55816 -18.52380 -18.16509 -17.50196 -16.70937 -16.67341 -16.49907 -16.44820 -16.17883 -15.57811 -15.27256 -15.06978 -14.94491 -14.25886 -14.22747 -13.71930 -13.62992 -13.29238 -13.01822 -12.71650 -12.65648 -12.54603 -12.46994 -12.22944 -12.14601 -11.84896 -11.65073 -11.62830 -11.39195 -11.35325 -11.10755 -10.69602 -10.54485 -10.34919 -9.44271 -8.20206 -6.31377 1.40418 1.43280 1.51179 2.38555 2.44435 2.83316 3.13282 3.14399 3.57667 3.61652 3.85127 3.95578 4.00907 4.03188 4.15844 4.20924 4.25361 4.33812 4.39580 4.47725 4.54070 4.64771 4.71960 4.76354 4.82485 4.85790 4.90703 4.94401 4.98815 5.01019 5.06148 5.16791 5.22406 5.30241 5.50233 5.71001 5.83943 5.85377 5.93979 6.07394 6.15537 6.25012 6.85333 7.38106 8.91562 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.004390 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.940791 B = 6376.773240 C = 7295.053402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.091 4.091 11 C 0.065 3.935 12 N -0.520 5.520 13 C 0.011 3.989 14 C 0.066 3.934 15 O -0.401 6.401 16 C 0.081 3.919 17 C 0.053 3.947 18 H 0.033 0.967 19 C 0.089 3.911 20 H 0.058 0.942 21 C -0.134 4.134 22 C -0.154 4.154 23 C 0.046 3.954 24 O -0.397 6.397 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.014 1.014 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -18.827 -4.535 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.063 4.063 12 N -0.246 5.246 13 C -0.116 4.116 14 C -0.011 4.011 15 O -0.320 6.320 16 C 0.004 3.996 17 C -0.056 4.056 18 H 0.051 0.949 19 C 0.032 3.968 20 H 0.076 0.924 21 C -0.171 4.171 22 C -0.191 4.191 23 C -0.030 4.030 24 O -0.317 6.317 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.004 0.996 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.672 -18.999 -4.664 20.369 hybrid contribution -0.779 1.551 0.622 1.844 sum 4.893 -17.448 -4.042 18.566 Atomic orbital electron populations 1.70098 1.07860 1.27808 1.51707 1.25982 0.95730 1.03374 0.94713 0.85509 0.78273 0.78089 0.79239 1.19039 1.20959 1.19181 1.21646 0.93570 0.92229 1.50516 0.92032 1.18955 0.94386 0.93156 0.94617 1.21472 0.98067 0.92233 1.01122 1.22117 0.93959 0.90317 0.99891 1.62286 1.16061 1.00796 1.45474 1.22949 0.95129 1.01463 0.92107 1.22812 0.93159 0.81353 1.03735 1.87953 1.54219 1.38092 1.51761 1.22643 0.88475 0.97240 0.91221 1.22250 0.95165 0.91202 0.97013 0.94902 1.22759 0.94166 0.84367 0.95551 0.92423 1.23134 0.99639 1.01864 0.92501 1.23167 0.99873 0.96892 0.99171 1.23320 1.01608 0.97960 0.80150 1.88340 1.85408 1.30482 1.27461 0.92814 0.98943 0.99560 0.92660 0.92161 0.90793 0.96505 0.95158 0.88405 0.86477 0.91324 0.87628 0.91263 0.90368 0.89426 0.90646 0.87932 0.89678 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.69 4.66 30.60 0.14 -3.55 16 11 C 0.06 2.24 4.56 86.30 0.39 2.64 16 12 N -0.52 -15.05 4.11 -870.00 -3.58 -18.63 16 13 C 0.01 0.31 5.13 86.31 0.44 0.75 16 14 C 0.07 1.47 7.01 72.01 0.50 1.98 16 15 O -0.40 -10.39 10.83 -148.98 -1.61 -12.00 16 16 C 0.08 1.93 5.86 72.02 0.42 2.35 16 17 C 0.05 1.43 2.12 44.93 0.10 1.53 16 18 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 19 C 0.09 2.27 2.66 31.26 0.08 2.35 16 20 H 0.06 1.65 6.97 -2.39 -0.02 1.64 16 21 C -0.13 -2.86 5.85 32.05 0.19 -2.68 16 22 C -0.15 -2.54 7.02 31.85 0.22 -2.32 16 23 C 0.05 0.79 7.79 72.45 0.56 1.36 16 24 O -0.40 -9.71 10.12 -148.98 -1.51 -11.22 16 25 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.05 2.17 6.27 -2.39 -0.01 2.15 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.56 6.16 -2.39 -0.01 2.54 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.10 2.67 6.07 -2.39 -0.01 2.65 16 34 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.11 2.41 7.63 -2.38 -0.02 2.39 16 37 H 0.07 1.50 6.27 -2.39 -0.01 1.48 16 38 H 0.08 1.88 7.70 -2.39 -0.02 1.87 16 39 H 0.09 1.76 6.17 -2.39 -0.01 1.75 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.03 328.40 0.48 -64.54 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.97 Total: 12.08 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.90 Total: -24.07 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -3.29 Total: -75.42 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -3.12 Total: -23.22 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.03 0.48 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367585769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.632 kcal (2) G-P(sol) polarization free energy of solvation -65.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds