Wall clock time and date at job start Mon Mar 30 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81398 * 103.00246 * 2 1 4 4 C 1.53000 * 109.47544 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.49707 * 54.92623 * 4 3 2 6 6 C 1.53115 * 109.53838 * 294.82549 * 4 3 2 7 7 C 1.53117 * 109.16277 * 182.38011 * 6 4 3 8 8 C 1.53036 * 109.27281 * 57.65428 * 7 6 4 9 9 N 1.46843 * 109.52737 * 300.81949 * 8 7 6 10 10 C 1.46898 * 111.00335 * 185.84186 * 9 8 7 11 11 C 1.53004 * 109.47260 * 283.90525 * 10 9 8 12 12 C 1.50698 * 115.54467 * 281.04818 * 11 10 9 13 13 H 1.07994 * 120.00331 * 146.04242 * 12 11 10 14 14 C 1.37882 * 120.00031 * 326.03823 * 12 11 10 15 15 N 1.31512 * 119.99891 * 339.74421 * 14 12 11 16 16 Si 1.86802 * 119.99830 * 159.74740 * 14 12 11 17 17 H 1.48499 * 109.47449 * 59.99996 * 16 14 12 18 18 H 1.48500 * 109.47011 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46959 * 299.99706 * 16 14 12 20 20 C 1.52997 * 117.50355 * 135.34043 * 11 10 9 21 21 C 1.52992 * 117.49972 * 66.71524 * 11 10 9 22 22 C 1.46844 * 111.19686 * 61.74270 * 9 8 7 23 23 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47426 * 299.99882 * 1 2 3 25 25 H 1.08996 * 109.47433 * 59.99640 * 1 2 3 26 26 H 1.09009 * 109.46793 * 59.99856 * 3 2 1 27 27 H 1.08999 * 109.47069 * 300.00155 * 3 2 1 28 28 H 1.09000 * 109.51993 * 302.29290 * 6 4 3 29 29 H 1.09004 * 109.52396 * 62.41411 * 6 4 3 30 30 H 1.08995 * 109.50213 * 297.71874 * 7 6 4 31 31 H 1.09000 * 109.50150 * 177.59104 * 7 6 4 32 32 H 1.09004 * 109.45717 * 180.80145 * 8 7 6 33 33 H 1.09002 * 109.46195 * 60.84207 * 8 7 6 34 34 H 1.09005 * 109.47252 * 43.90183 * 10 9 8 35 35 H 1.08996 * 109.47589 * 163.90072 * 10 9 8 36 36 H 0.97003 * 119.99915 * 185.01764 * 15 14 12 37 37 H 1.09005 * 117.49539 * 359.97438 * 20 11 10 38 38 H 1.08991 * 117.50130 * 145.01971 * 20 11 10 39 39 H 1.09005 * 117.49618 * 214.98221 * 21 11 10 40 40 H 1.09005 * 117.50088 * 359.97438 * 21 11 10 41 41 H 1.08998 * 109.46249 * 58.27875 * 22 9 8 42 42 H 1.09005 * 109.46336 * 178.23834 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1707 1.3942 -0.8400 6 6 4.3188 1.3958 1.3106 7 6 5.8324 1.6265 1.3277 8 6 6.1175 3.1211 1.1635 9 7 5.5467 3.5932 -0.1044 10 6 5.9195 4.9906 -0.3616 11 6 5.0796 5.9138 0.5234 12 6 3.6738 6.1703 0.0451 13 1 2.8760 6.3046 0.7605 14 6 3.4060 6.2337 -1.3060 15 7 4.3788 6.4704 -2.1587 16 14 1.6614 5.9834 -1.9251 17 1 0.7735 7.0169 -1.3346 18 1 1.6402 6.0991 -3.4055 19 1 1.1839 4.6347 -1.5277 20 6 5.8026 7.0569 1.2386 21 6 5.3105 5.8463 2.0343 22 6 4.0880 3.4254 -0.1251 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8031 2.2371 0.8901 27 1 1.8031 2.2371 -0.8900 28 1 3.8616 1.9147 2.1531 29 1 4.1113 0.3283 1.3843 30 1 6.2937 1.0759 0.5079 31 1 6.2426 1.2798 2.2762 32 1 7.1948 3.2871 1.1610 33 1 5.6677 3.6697 1.9910 34 1 6.9762 5.1324 -0.1348 35 1 5.7380 5.2281 -1.4098 36 1 4.1801 6.5874 -3.1010 37 1 6.8768 7.1510 1.0790 38 1 5.2615 7.9948 1.3633 39 1 4.4456 5.9878 2.6824 40 1 6.0605 5.1438 2.3979 41 1 3.6476 3.9726 0.7084 42 1 3.6912 3.8126 -1.0636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390191907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:53 Heat of formation + Delta-G solvation = 10.269721 kcal Electronic energy + Delta-G solvation = -20098.282169 eV Core-core repulsion = 17397.465210 eV Total energy + Delta-G solvation = -2700.816959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58268 -37.88221 -34.47802 -34.30102 -32.59781 -29.85580 -28.03007 -27.71492 -27.08551 -23.65757 -23.15306 -22.50443 -20.96339 -20.30560 -18.18126 -17.16689 -16.73182 -16.44145 -15.97934 -15.67319 -15.57891 -15.12473 -14.96453 -14.58094 -14.30341 -14.04545 -14.03314 -13.58426 -13.44461 -13.07637 -12.98930 -12.71312 -12.52256 -12.43225 -12.22942 -11.97264 -11.81157 -11.55067 -11.48191 -11.24633 -11.07877 -10.92466 -10.75345 -10.64974 -9.89655 -8.79630 -8.63964 -8.11108 -6.08414 0.73338 1.34837 1.39915 1.44722 1.67015 2.37919 2.93263 3.33631 3.64290 3.82720 3.92324 4.10852 4.24815 4.30333 4.33721 4.36482 4.41366 4.48196 4.58389 4.65257 4.74152 4.78028 4.83539 4.86200 4.87080 4.91554 5.05012 5.10298 5.14842 5.19972 5.24178 5.32979 5.45655 5.49655 5.55497 5.61765 5.67399 6.08733 6.38018 6.48764 6.68914 6.84654 7.43689 8.89201 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.008354 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.936096 B = 3350.980383 C = 4614.981467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.284 6.284 3 C -0.069 4.069 4 C -0.067 4.067 5 H 0.068 0.932 6 C -0.103 4.103 7 C -0.107 4.107 8 C 0.037 3.963 9 N -0.532 5.532 10 C 0.085 3.915 11 C 0.008 3.992 12 C -0.500 4.500 13 H 0.044 0.956 14 C 0.049 3.951 15 N -0.888 5.888 16 Si 0.919 3.081 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.260 1.260 20 C -0.209 4.209 21 C -0.195 4.195 22 C 0.092 3.908 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -11.511 5.245 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.058 6.058 3 C -0.218 4.218 4 C -0.087 4.087 5 H 0.087 0.913 6 C -0.141 4.141 7 C -0.145 4.145 8 C -0.091 4.091 9 N -0.255 5.255 10 C -0.043 4.043 11 C 0.006 3.994 12 C -0.537 4.537 13 H 0.063 0.937 14 C -0.153 4.153 15 N -0.525 5.525 16 Si 0.744 3.256 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.185 1.185 20 C -0.248 4.248 21 C -0.232 4.232 22 C -0.037 4.037 23 H 0.137 0.863 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.058 0.942 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.242 -12.730 4.639 13.734 hybrid contribution -2.030 2.218 0.090 3.008 sum -4.272 -10.512 4.729 12.293 Atomic orbital electron populations 1.23459 0.92151 1.07558 1.05428 1.86670 1.09717 1.11340 1.98079 1.23350 1.00146 0.93908 1.04375 1.20997 0.91440 0.96728 0.99559 0.91313 1.21567 0.95764 1.01066 0.95718 1.21543 0.95781 0.94927 1.02229 1.22467 0.99009 0.96200 0.91437 1.62318 1.10800 1.19802 1.32579 1.21865 0.94478 0.84945 1.02978 1.19740 0.95098 0.95600 0.88949 1.20471 0.92151 1.49816 0.91294 0.93738 1.25320 0.99137 0.94064 0.96782 1.69899 1.32935 1.46027 1.03665 0.86235 0.82435 0.79553 0.77342 1.20389 1.21104 1.18483 1.22923 0.98490 0.93553 1.09820 1.23062 1.02227 1.01392 0.96517 1.21876 0.88232 0.92944 1.00681 0.86321 0.89802 0.90439 0.90110 0.91527 0.92545 0.90499 0.91817 0.89773 0.91638 0.94015 0.94403 0.88336 0.92674 0.90805 0.91928 0.91313 0.88641 0.94166 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 10.76 113.37 1.22 -1.03 16 2 S -0.28 -7.47 21.25 -56.49 -1.20 -8.67 16 3 C -0.07 -2.13 5.39 71.98 0.39 -1.75 16 4 C -0.07 -2.25 2.35 -10.74 -0.03 -2.28 16 5 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 6 C -0.10 -2.98 5.07 30.67 0.16 -2.82 16 7 C -0.11 -2.99 6.09 30.65 0.19 -2.80 16 8 C 0.04 1.24 4.64 86.33 0.40 1.64 16 9 N -0.53 -21.68 4.86 -896.37 -4.36 -26.03 16 10 C 0.09 3.93 5.34 86.31 0.46 4.39 16 11 C 0.01 0.38 1.12 -52.93 -0.06 0.32 16 12 C -0.50 -25.95 6.44 25.60 0.16 -25.79 16 13 H 0.04 2.37 7.89 -2.91 -0.02 2.34 16 14 C 0.05 2.52 3.66 84.66 0.31 2.83 16 15 N -0.89 -48.13 10.92 21.45 0.23 -47.90 16 16 Si 0.92 41.02 29.00 68.60 1.99 43.01 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 C -0.21 -9.40 9.88 30.59 0.30 -9.10 16 21 C -0.19 -8.09 8.47 30.59 0.26 -7.83 16 22 C 0.09 3.79 3.25 86.32 0.28 4.07 16 23 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.04 7.24 -2.38 -0.02 2.03 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.11 7.96 -2.38 -0.02 2.09 16 33 H 0.04 1.47 4.76 -2.39 -0.01 1.46 16 34 H 0.04 1.67 7.69 -2.38 -0.02 1.65 16 35 H 0.10 5.22 5.25 -2.39 -0.01 5.21 16 36 H 0.26 13.78 8.32 -92.71 -0.77 13.00 16 37 H 0.07 3.11 8.09 -2.38 -0.02 3.09 16 38 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 40 H 0.10 3.56 5.73 -2.38 -0.01 3.55 16 41 H 0.04 1.79 6.01 -2.39 -0.01 1.78 16 42 H 0.05 2.15 5.90 -2.38 -0.01 2.13 16 Total: -1.00 -54.38 324.18 1.68 -52.70 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.97 Total: 27.03 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.04 Total: -40.15 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -4.12 Total: -73.93 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.99 Total: 43.01 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.20 Total: -8.67 kcal Total: -54.38 1.68 -52.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390191907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.971 kcal (2) G-P(sol) polarization free energy of solvation -54.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds