Wall clock time and date at job start Mon Mar 30 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81402 * 102.99674 * 2 1 4 4 C 1.53004 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.49991 * 304.38347 * 4 3 2 6 6 C 1.53121 * 109.53748 * 64.47970 * 4 3 2 7 7 C 1.53093 * 109.15425 * 177.61668 * 6 4 3 8 8 C 1.53034 * 109.29276 * 302.33838 * 7 6 4 9 9 N 1.46853 * 109.51389 * 59.18407 * 8 7 6 10 10 C 1.46896 * 110.99741 * 174.16883 * 9 8 7 11 11 C 1.52997 * 109.47514 * 65.61871 * 10 9 8 12 12 C 1.50709 * 115.54644 * 280.46442 * 11 10 9 13 13 H 1.08001 * 119.99821 * 144.15170 * 12 11 10 14 14 C 1.37876 * 119.99775 * 324.15744 * 12 11 10 15 15 N 1.31510 * 120.00277 * 339.50356 * 14 12 11 16 16 Si 1.86801 * 119.99992 * 159.51155 * 14 12 11 17 17 H 1.48500 * 109.47074 * 64.99483 * 16 14 12 18 18 H 1.48494 * 109.47348 * 184.99626 * 16 14 12 19 19 H 1.48503 * 109.46837 * 304.99807 * 16 14 12 20 20 C 1.52995 * 117.50503 * 134.75696 * 11 10 9 21 21 C 1.52994 * 117.50243 * 66.12780 * 11 10 9 22 22 C 1.46840 * 111.19734 * 298.26684 * 9 8 7 23 23 H 1.08999 * 109.47489 * 299.99944 * 1 2 3 24 24 H 1.09001 * 109.47594 * 60.00085 * 1 2 3 25 25 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47200 * 60.00487 * 3 2 1 27 27 H 1.09003 * 109.47112 * 299.99767 * 3 2 1 28 28 H 1.09007 * 109.52097 * 297.52221 * 6 4 3 29 29 H 1.08996 * 109.52172 * 57.64688 * 6 4 3 30 30 H 1.09003 * 109.49251 * 182.39682 * 7 6 4 31 31 H 1.09002 * 109.50979 * 62.28860 * 7 6 4 32 32 H 1.09005 * 109.46332 * 299.17598 * 8 7 6 33 33 H 1.08994 * 109.46791 * 179.19607 * 8 7 6 34 34 H 1.09005 * 109.46853 * 185.61637 * 10 9 8 35 35 H 1.09003 * 109.47394 * 305.60954 * 10 9 8 36 36 H 0.96994 * 120.00457 * 185.02935 * 15 14 12 37 37 H 1.09004 * 117.49603 * 0.02562 * 20 11 10 38 38 H 1.08997 * 117.49853 * 145.01599 * 20 11 10 39 39 H 1.09003 * 117.50427 * 214.98444 * 21 11 10 40 40 H 1.09006 * 117.49968 * 359.97438 * 21 11 10 41 41 H 1.09002 * 109.46176 * 181.75804 * 22 9 8 42 42 H 1.09002 * 109.46275 * 301.72656 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.1695 1.4044 0.8471 6 6 4.3205 1.3801 -1.3032 7 6 5.8339 1.6107 -1.3209 8 6 6.1191 3.1071 -1.1745 9 7 5.5465 3.5945 0.0869 10 6 5.9190 4.9949 0.3277 11 6 5.2792 5.8839 -0.7406 12 6 5.9837 5.9086 -2.0727 13 1 5.4104 5.9771 -2.9855 14 6 7.3598 5.8435 -2.1261 15 7 8.0747 6.1611 -1.0689 16 14 8.2091 5.3044 -3.7001 17 1 7.9493 6.3017 -4.7693 18 1 9.6715 5.2020 -3.4635 19 1 7.6815 3.9809 -4.1189 20 6 4.6043 7.1751 -0.2739 21 6 3.7533 5.9947 -0.7464 22 6 4.0878 3.4269 0.1076 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8030 2.2371 -0.8900 28 1 4.1141 0.3115 -1.3637 29 1 3.8637 1.8881 -2.1525 30 1 6.2454 1.2525 -2.2645 31 1 6.2942 1.0700 -0.4939 32 1 5.6703 3.6458 -2.0092 33 1 7.1963 3.2731 -1.1724 34 1 5.5668 5.3003 1.3130 35 1 7.0034 5.0954 0.2823 36 1 9.0425 6.1860 -1.1274 37 1 4.6165 7.3917 0.7944 38 1 4.6699 8.0429 -0.9302 39 1 3.2589 6.0859 -1.7135 40 1 3.2051 5.4339 0.0107 41 1 3.6897 3.8253 1.0409 42 1 3.6486 3.9640 -0.7330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390191909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:56 Heat of formation + Delta-G solvation = 24.473672 kcal Electronic energy + Delta-G solvation = -19916.941332 eV Core-core repulsion = 17216.740303 eV Total energy + Delta-G solvation = -2700.201029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.04197 -36.25428 -33.02947 -32.30948 -31.14704 -29.08499 -26.77466 -25.73956 -25.44672 -22.29363 -21.54308 -20.92787 -19.13759 -18.81599 -16.34313 -16.01542 -15.10945 -14.75087 -14.46741 -14.28114 -14.06107 -13.86122 -13.64969 -13.42975 -13.13260 -12.78057 -12.47907 -12.05252 -11.86350 -11.54856 -11.45663 -11.03633 -10.98361 -10.71265 -10.52166 -10.32222 -10.19723 -10.10067 -9.99873 -9.75568 -9.63967 -9.50491 -9.02421 -8.72195 -8.03109 -7.66287 -7.13007 -6.14564 -4.07309 1.67776 2.60946 3.22665 3.30496 3.34221 4.31089 4.72975 4.90298 4.98458 5.00632 5.01849 5.22425 5.36679 5.48754 5.55125 5.63297 5.65803 5.85406 5.96959 6.07204 6.12450 6.17131 6.34566 6.37841 6.46030 6.47965 6.54789 6.61049 6.65090 6.73815 6.81479 6.93731 7.02068 7.19849 7.29079 7.40815 7.56401 7.91505 8.16628 8.20539 8.45389 8.82198 9.44369 10.87931 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.005796 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.818536 B = 4829.541442 C = 5413.986920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.265 6.265 3 C -0.073 4.073 4 C -0.069 4.069 5 H 0.079 0.921 6 C -0.110 4.110 7 C -0.120 4.120 8 C 0.059 3.941 9 N -0.527 5.527 10 C 0.079 3.921 11 C 0.028 3.972 12 C -0.492 4.492 13 H 0.057 0.943 14 C 0.081 3.919 15 N -0.866 5.866 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.203 4.203 21 C -0.219 4.219 22 C 0.053 3.947 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.124 0.876 36 H 0.265 0.735 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -9.143 1.994 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.039 6.039 3 C -0.222 4.222 4 C -0.089 4.089 5 H 0.098 0.902 6 C -0.148 4.148 7 C -0.158 4.158 8 C -0.069 4.069 9 N -0.250 5.250 10 C -0.048 4.048 11 C 0.026 3.974 12 C -0.529 4.529 13 H 0.075 0.925 14 C -0.123 4.123 15 N -0.502 5.502 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.242 4.242 21 C -0.256 4.256 22 C -0.077 4.077 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.694 -10.367 2.470 13.754 hybrid contribution -0.911 1.495 -1.466 2.284 sum -9.605 -8.872 1.003 13.114 Atomic orbital electron populations 1.23363 0.95277 1.06061 1.04677 1.86875 1.06172 1.12863 1.98011 1.23500 1.01106 0.92938 1.04650 1.21011 0.90202 0.98184 0.99466 0.90246 1.21608 0.96293 1.00261 0.96627 1.21672 0.95258 0.98145 1.00755 1.22131 0.99986 0.92442 0.92370 1.62340 1.08052 1.20711 1.33897 1.22007 1.04965 0.83801 0.94005 1.19684 0.87630 0.93618 0.96432 1.20361 0.90878 1.51252 0.90374 0.92470 1.24873 0.97225 0.94325 0.95918 1.69842 1.06388 1.44643 1.29348 0.86915 0.78670 0.80077 0.84160 1.20394 1.21011 1.19463 1.22935 1.09101 0.94028 0.98150 1.23144 0.97212 1.04600 1.00625 1.22446 0.91288 0.93042 1.00910 0.90784 0.90711 0.88463 0.90291 0.90205 0.91920 0.92351 0.92482 0.92219 0.91599 0.91531 0.94531 0.85847 0.92511 0.91921 0.90831 0.91159 0.90680 0.92340 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 10.76 101.05 1.09 -0.04 16 2 S -0.27 -3.30 21.21 -107.50 -2.28 -5.58 16 3 C -0.07 -0.95 5.39 37.16 0.20 -0.75 16 4 C -0.07 -1.05 2.35 -90.54 -0.21 -1.26 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 6 C -0.11 -1.72 5.06 -26.62 -0.13 -1.86 16 7 C -0.12 -2.07 6.09 -26.67 -0.16 -2.23 16 8 C 0.06 1.21 4.15 -3.83 -0.02 1.20 16 9 N -0.53 -10.77 4.86 -234.67 -1.14 -11.91 16 10 C 0.08 1.82 5.27 -3.83 -0.02 1.80 16 11 C 0.03 0.67 1.43 -155.66 -0.22 0.44 16 12 C -0.49 -12.68 6.59 -34.44 -0.23 -12.91 16 13 H 0.06 1.51 7.90 -52.49 -0.41 1.10 16 14 C 0.08 2.07 3.97 -17.82 -0.07 2.00 16 15 N -0.87 -23.00 11.05 55.43 0.61 -22.39 16 16 Si 0.87 20.04 29.59 -169.99 -5.03 15.01 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 C -0.20 -4.60 9.88 -26.73 -0.26 -4.86 16 21 C -0.22 -4.59 7.55 -26.73 -0.20 -4.79 16 22 C 0.05 0.94 3.08 -3.84 -0.01 0.93 16 23 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 24 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 25 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 28 H 0.06 0.93 7.21 -51.93 -0.37 0.55 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.51 5.89 -51.93 -0.31 1.20 16 33 H 0.07 1.51 7.62 -51.93 -0.40 1.11 16 34 H 0.04 0.81 7.95 -51.93 -0.41 0.40 16 35 H 0.12 3.17 5.30 -51.93 -0.28 2.89 16 36 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.07 1.44 5.64 -51.93 -0.29 1.14 16 41 H 0.06 1.01 7.58 -51.93 -0.39 0.62 16 42 H 0.06 1.12 4.99 -51.93 -0.26 0.86 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -25.72 325.66 -10.52 -36.23 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.33 Total: 6.06 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -0.26 Total: -22.33 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.53 Total: -34.30 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.28 Total: -5.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.72 -10.52 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390191909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.706 kcal (2) G-P(sol) polarization free energy of solvation -25.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds