Wall clock time and date at job start Mon Mar 30 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81402 * 102.99674 * 2 1 4 4 C 1.53004 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.49991 * 304.38347 * 4 3 2 6 6 C 1.53121 * 109.53748 * 64.47970 * 4 3 2 7 7 C 1.53093 * 109.15425 * 177.61668 * 6 4 3 8 8 C 1.53034 * 109.29276 * 302.33838 * 7 6 4 9 9 N 1.46853 * 109.51389 * 59.18407 * 8 7 6 10 10 C 1.46896 * 110.99741 * 174.16883 * 9 8 7 11 11 C 1.52997 * 109.47514 * 65.61871 * 10 9 8 12 12 C 1.50709 * 115.54644 * 280.46442 * 11 10 9 13 13 H 1.08001 * 119.99821 * 144.15170 * 12 11 10 14 14 C 1.37876 * 119.99775 * 324.15744 * 12 11 10 15 15 N 1.31510 * 120.00277 * 339.50356 * 14 12 11 16 16 Si 1.86801 * 119.99992 * 159.51155 * 14 12 11 17 17 H 1.48500 * 109.47074 * 64.99483 * 16 14 12 18 18 H 1.48494 * 109.47348 * 184.99626 * 16 14 12 19 19 H 1.48503 * 109.46837 * 304.99807 * 16 14 12 20 20 C 1.52995 * 117.50503 * 134.75696 * 11 10 9 21 21 C 1.52994 * 117.50243 * 66.12780 * 11 10 9 22 22 C 1.46840 * 111.19734 * 298.26684 * 9 8 7 23 23 H 1.08999 * 109.47489 * 299.99944 * 1 2 3 24 24 H 1.09001 * 109.47594 * 60.00085 * 1 2 3 25 25 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47200 * 60.00487 * 3 2 1 27 27 H 1.09003 * 109.47112 * 299.99767 * 3 2 1 28 28 H 1.09007 * 109.52097 * 297.52221 * 6 4 3 29 29 H 1.08996 * 109.52172 * 57.64688 * 6 4 3 30 30 H 1.09003 * 109.49251 * 182.39682 * 7 6 4 31 31 H 1.09002 * 109.50979 * 62.28860 * 7 6 4 32 32 H 1.09005 * 109.46332 * 299.17598 * 8 7 6 33 33 H 1.08994 * 109.46791 * 179.19607 * 8 7 6 34 34 H 1.09005 * 109.46853 * 185.61637 * 10 9 8 35 35 H 1.09003 * 109.47394 * 305.60954 * 10 9 8 36 36 H 0.96994 * 120.00457 * 185.02935 * 15 14 12 37 37 H 1.09004 * 117.49603 * 0.02562 * 20 11 10 38 38 H 1.08997 * 117.49853 * 145.01599 * 20 11 10 39 39 H 1.09003 * 117.50427 * 214.98444 * 21 11 10 40 40 H 1.09006 * 117.49968 * 359.97438 * 21 11 10 41 41 H 1.09002 * 109.46176 * 181.75804 * 22 9 8 42 42 H 1.09002 * 109.46275 * 301.72656 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.1695 1.4044 0.8471 6 6 4.3205 1.3801 -1.3032 7 6 5.8339 1.6107 -1.3209 8 6 6.1191 3.1071 -1.1745 9 7 5.5465 3.5945 0.0869 10 6 5.9190 4.9949 0.3277 11 6 5.2792 5.8839 -0.7406 12 6 5.9837 5.9086 -2.0727 13 1 5.4104 5.9771 -2.9855 14 6 7.3598 5.8435 -2.1261 15 7 8.0747 6.1611 -1.0689 16 14 8.2091 5.3044 -3.7001 17 1 7.9493 6.3017 -4.7693 18 1 9.6715 5.2020 -3.4635 19 1 7.6815 3.9809 -4.1189 20 6 4.6043 7.1751 -0.2739 21 6 3.7533 5.9947 -0.7464 22 6 4.0878 3.4269 0.1076 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8030 2.2371 -0.8900 28 1 4.1141 0.3115 -1.3637 29 1 3.8637 1.8881 -2.1525 30 1 6.2454 1.2525 -2.2645 31 1 6.2942 1.0700 -0.4939 32 1 5.6703 3.6458 -2.0092 33 1 7.1963 3.2731 -1.1724 34 1 5.5668 5.3003 1.3130 35 1 7.0034 5.0954 0.2823 36 1 9.0425 6.1860 -1.1274 37 1 4.6165 7.3917 0.7944 38 1 4.6699 8.0429 -0.9302 39 1 3.2589 6.0859 -1.7135 40 1 3.2051 5.4339 0.0107 41 1 3.6897 3.8253 1.0409 42 1 3.6486 3.9640 -0.7330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390191909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:55 Heat of formation + Delta-G solvation = 11.776707 kcal Electronic energy + Delta-G solvation = -19917.491914 eV Core-core repulsion = 17216.740303 eV Total energy + Delta-G solvation = -2700.751611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62469 -37.86196 -34.57416 -34.19791 -32.58649 -29.80114 -28.33393 -27.33699 -27.16466 -23.83627 -23.12532 -22.48767 -20.90320 -20.31650 -18.16169 -17.11638 -16.78264 -16.35884 -15.84575 -15.73023 -15.50917 -15.28996 -15.02872 -14.35969 -14.26687 -14.17128 -13.90215 -13.62036 -13.34366 -13.07136 -12.96032 -12.86988 -12.51178 -12.35368 -12.19502 -11.93716 -11.80410 -11.65667 -11.40635 -11.25386 -11.18172 -10.90864 -10.71340 -10.55220 -9.91485 -8.81486 -8.58977 -8.12193 -6.08781 0.78807 1.36606 1.42697 1.47806 1.74482 2.39514 2.94772 3.32650 3.63092 3.84297 3.91064 4.08404 4.32631 4.35601 4.37366 4.39217 4.44026 4.51700 4.61088 4.65497 4.71930 4.73561 4.81314 4.86794 4.91038 4.92213 5.04880 5.09973 5.16411 5.20211 5.20583 5.34200 5.42465 5.48463 5.56009 5.62232 5.66453 6.02872 6.37492 6.47097 6.64924 6.84393 7.44313 8.89463 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.005796 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.818536 B = 4829.541442 C = 5413.986920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.301 6.301 3 C -0.064 4.064 4 C -0.060 4.060 5 H 0.074 0.926 6 C -0.103 4.103 7 C -0.116 4.116 8 C 0.067 3.933 9 N -0.529 5.529 10 C 0.087 3.913 11 C 0.004 3.996 12 C -0.503 4.503 13 H 0.043 0.957 14 C 0.051 3.949 15 N -0.889 5.889 16 Si 0.920 3.080 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.210 4.210 21 C -0.190 4.190 22 C 0.056 3.944 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.094 0.906 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.657 -10.541 2.141 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.076 6.076 3 C -0.213 4.213 4 C -0.080 4.080 5 H 0.093 0.907 6 C -0.141 4.141 7 C -0.153 4.153 8 C -0.061 4.061 9 N -0.251 5.251 10 C -0.041 4.041 11 C 0.002 3.998 12 C -0.540 4.540 13 H 0.061 0.939 14 C -0.151 4.151 15 N -0.526 5.526 16 Si 0.745 3.255 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.249 4.249 21 C -0.227 4.227 22 C -0.074 4.074 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.592 -11.768 2.611 16.046 hybrid contribution -0.376 1.928 -1.498 2.470 sum -10.968 -9.840 1.113 14.777 Atomic orbital electron populations 1.23432 0.91790 1.07345 1.05649 1.86982 1.10033 1.12410 1.98125 1.23335 0.99055 0.93528 1.05384 1.20867 0.92141 0.95989 0.98956 0.90750 1.21548 0.94752 1.01082 0.96698 1.21632 0.96840 0.95443 1.01429 1.21954 0.98011 0.94558 0.91554 1.62338 1.10061 1.19070 1.33626 1.21756 1.03151 0.85220 0.93927 1.19737 0.89453 0.94654 0.95959 1.20476 0.91242 1.51388 0.90864 0.93897 1.25317 0.97621 0.94235 0.97974 1.69940 1.06346 1.45596 1.30696 0.86209 0.77886 0.79829 0.81543 1.20456 1.20839 1.18871 1.22933 1.09740 0.93620 0.98587 1.23119 0.95584 1.02897 1.01080 1.22454 0.89172 0.94993 1.00776 0.89676 0.89883 0.87024 0.89148 0.89877 0.90561 0.92789 0.91590 0.91788 0.93997 0.94362 0.94159 0.88802 0.92677 0.90798 0.92139 0.91237 0.88282 0.91523 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.76 113.37 1.22 -0.44 16 2 S -0.30 -6.70 21.21 -56.49 -1.20 -7.89 16 3 C -0.06 -1.49 5.39 71.98 0.39 -1.10 16 4 C -0.06 -1.70 2.35 -10.74 -0.03 -1.72 16 5 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 6 C -0.10 -3.03 5.06 30.67 0.16 -2.87 16 7 C -0.12 -3.86 6.09 30.64 0.19 -3.67 16 8 C 0.07 2.80 4.15 86.32 0.36 3.16 16 9 N -0.53 -21.39 4.86 -896.37 -4.35 -25.75 16 10 C 0.09 4.02 5.27 86.30 0.45 4.48 16 11 C 0.00 0.18 1.43 -52.93 -0.08 0.10 16 12 C -0.50 -26.33 6.59 25.60 0.17 -26.16 16 13 H 0.04 2.31 7.90 -2.91 -0.02 2.29 16 14 C 0.05 2.64 3.97 84.66 0.34 2.97 16 15 N -0.89 -48.31 11.05 21.45 0.24 -48.07 16 16 Si 0.92 41.63 29.59 68.60 2.03 43.66 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 C -0.21 -9.40 9.88 30.59 0.30 -9.10 16 21 C -0.19 -7.72 7.55 30.59 0.23 -7.49 16 22 C 0.06 1.88 3.08 86.33 0.27 2.14 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 2.07 7.21 -2.38 -0.02 2.06 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.93 5.89 -2.38 -0.01 1.92 16 33 H 0.04 1.77 7.62 -2.39 -0.02 1.75 16 34 H 0.04 1.78 7.95 -2.38 -0.02 1.76 16 35 H 0.09 4.94 5.30 -2.39 -0.01 4.93 16 36 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 37 H 0.07 3.10 8.09 -2.38 -0.02 3.08 16 38 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.10 3.54 5.64 -2.38 -0.01 3.52 16 41 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 42 H 0.05 1.77 4.99 -2.39 -0.01 1.76 16 Total: -1.00 -55.16 325.66 1.65 -53.51 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.97 Total: 24.24 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 3.97 Total: -39.69 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -4.12 Total: -73.82 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -1.20 Total: -7.89 kcal Total: -55.16 1.65 -53.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390191909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.283 kcal (2) G-P(sol) polarization free energy of solvation -55.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds