Wall clock time and date at job start Mon Mar 30 2020 01:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47565 * 2 1 4 4 C 1.36940 * 119.99916 * 263.15501 * 3 2 1 5 5 H 1.07999 * 119.99527 * 194.41511 * 4 3 2 6 6 C 1.38807 * 120.00187 * 14.40905 * 4 3 2 7 7 N 1.31621 * 120.00078 * 16.67423 * 6 4 3 8 8 Si 1.86804 * 120.00007 * 196.67222 * 6 4 3 9 9 H 1.48502 * 109.46959 * 60.00188 * 8 6 4 10 10 H 1.48498 * 109.47091 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46849 * 300.00195 * 8 6 4 12 12 C 1.46504 * 119.99981 * 83.14892 * 3 2 1 13 13 H 1.08994 * 109.47234 * 306.82873 * 12 3 2 14 14 C 1.53004 * 109.46886 * 186.83314 * 12 3 2 15 15 C 1.50701 * 109.46931 * 66.83165 * 12 3 2 16 16 C 1.39370 * 119.50505 * 46.09123 * 15 12 3 17 17 C 1.36096 * 120.98997 * 180.02562 * 16 15 12 18 18 C 1.40536 * 119.65417 * 359.97438 * 17 16 15 19 19 C 1.40541 * 121.29640 * 180.02562 * 18 17 16 20 20 C 1.36089 * 119.66078 * 179.97438 * 19 18 17 21 21 C 1.39382 * 120.98551 * 0.02562 * 20 19 18 22 22 C 1.36091 * 120.98991 * 0.02562 * 21 20 19 23 23 C 1.40542 * 119.65279 * 359.95847 * 22 21 20 24 24 C 1.36087 * 119.50405 * 225.81592 * 15 12 3 25 25 H 1.08992 * 109.46907 * 52.08459 * 1 2 3 26 26 H 1.08993 * 109.47206 * 172.08874 * 1 2 3 27 27 H 1.09000 * 109.46587 * 292.09041 * 1 2 3 28 28 H 1.08997 * 109.46900 * 120.00271 * 2 1 3 29 29 H 1.08998 * 109.46716 * 239.99937 * 2 1 3 30 30 H 0.96997 * 120.00326 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47581 * 60.00442 * 14 12 3 32 32 H 1.09005 * 109.46647 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.47125 * 299.99556 * 14 12 3 34 34 H 1.08002 * 119.50782 * 359.97438 * 16 15 12 35 35 H 1.08003 * 120.17455 * 179.97438 * 17 16 15 36 36 H 1.08003 * 120.16663 * 359.95870 * 19 18 17 37 37 H 1.08002 * 119.50865 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.50270 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.17130 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.17354 * 359.97438 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3800 1.9795 -1.1775 5 1 2.9512 2.8960 -1.1643 6 6 2.0124 1.4081 -2.3879 7 7 1.0608 0.4996 -2.4248 8 14 2.8685 1.9285 -3.9646 9 1 4.3211 1.6393 -3.8578 10 1 2.2964 1.1761 -5.1100 11 1 2.6679 3.3841 -4.1794 12 6 2.1200 2.1222 1.2597 13 1 1.1627 2.0876 1.7798 14 6 2.4888 3.5779 0.9667 15 6 3.1847 1.4985 2.1249 16 6 4.4168 1.1663 1.5648 17 6 5.3996 0.6014 2.3180 18 6 5.1720 0.3485 3.6815 19 6 6.1625 -0.2329 4.4915 20 6 5.9065 -0.4627 5.8082 21 6 4.6742 -0.1304 6.3682 22 6 3.6911 0.4330 5.6146 23 6 3.9187 0.6857 4.2509 24 6 2.9305 1.2734 3.4428 25 1 -0.3633 0.6315 -0.8107 26 1 -0.3633 -1.0178 -0.1414 27 1 -0.3632 0.3865 0.9523 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.8037 0.1005 -3.2706 31 1 1.7187 4.0290 0.3409 32 1 2.5647 4.1291 1.9040 33 1 3.4461 3.6126 0.4466 34 1 4.5942 1.3592 0.5170 35 1 6.3494 0.3488 1.8702 36 1 7.1218 -0.4963 4.0710 37 1 6.6696 -0.9093 6.4284 38 1 4.4967 -0.3237 7.4159 39 1 2.7409 0.6849 6.0621 40 1 1.9727 1.5406 3.8642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:51 Heat of formation + Delta-G solvation = 67.952179 kcal Electronic energy + Delta-G solvation = -20409.439349 eV Core-core repulsion = 17575.679738 eV Total energy + Delta-G solvation = -2833.759611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07073 -37.43594 -35.35113 -32.73711 -32.00580 -30.47537 -29.37800 -28.84631 -27.34691 -24.61313 -22.97998 -22.71114 -21.60237 -21.23445 -19.72687 -16.93525 -16.62530 -16.24927 -15.59814 -15.19285 -14.46608 -13.98010 -13.75173 -13.67979 -13.25742 -13.11953 -13.02707 -12.51516 -12.19911 -11.88761 -11.75848 -11.55858 -11.16993 -11.01874 -10.80605 -10.72917 -10.65808 -10.43354 -10.33029 -10.15109 -9.95165 -9.69678 -9.51619 -9.29696 -8.38989 -8.09787 -7.53890 -6.80290 -5.68728 -3.09087 0.86051 1.36480 2.39656 3.34179 3.39323 3.46044 3.46681 4.43550 4.54635 4.85164 5.02117 5.12522 5.32997 5.35123 5.40642 5.45055 5.55034 5.69789 5.76590 5.93507 6.02022 6.12675 6.18924 6.29205 6.34650 6.46289 6.54966 6.59896 6.66175 6.68980 6.79062 6.90969 6.98905 7.02302 7.10908 7.11899 7.21778 7.31579 7.45897 7.71846 7.84949 8.14452 8.42886 9.29010 9.90556 10.36897 11.33414 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.005117 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.195350 B = 5470.287999 C = 5769.447529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.172 3.828 3 N -0.588 5.588 4 C -0.249 4.249 5 H 0.078 0.922 6 C -0.004 4.004 7 N -0.902 5.902 8 Si 0.900 3.100 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.286 1.286 12 C 0.202 3.798 13 H 0.040 0.960 14 C -0.134 4.134 15 C -0.065 4.065 16 C -0.072 4.072 17 C -0.127 4.127 18 C -0.057 4.057 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.049 4.049 24 C -0.123 4.123 25 H 0.086 0.914 26 H 0.020 0.980 27 H 0.003 0.997 28 H -0.001 1.001 29 H 0.088 0.912 30 H 0.250 0.750 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 0.016 13.221 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.047 3.953 3 N -0.309 5.309 4 C -0.378 4.378 5 H 0.096 0.904 6 C -0.201 4.201 7 N -0.548 5.548 8 Si 0.730 3.270 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.212 1.212 12 C 0.094 3.906 13 H 0.058 0.942 14 C -0.192 4.192 15 C -0.068 4.068 16 C -0.090 4.090 17 C -0.145 4.145 18 C -0.057 4.057 19 C -0.123 4.123 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.049 4.049 24 C -0.141 4.141 25 H 0.105 0.895 26 H 0.040 0.960 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.277 -0.063 13.033 14.466 hybrid contribution 0.329 0.062 -0.834 0.899 sum 6.606 0.000 12.199 13.873 Atomic orbital electron populations 1.22223 0.99373 0.99298 0.99107 1.20681 0.92292 0.84339 0.97951 1.44173 1.75515 1.10355 1.00895 1.19332 1.27431 1.07745 0.83296 0.90437 1.24810 0.97899 0.99912 0.97447 1.70148 1.28816 1.31424 1.24454 0.86403 0.79391 0.77754 0.83441 1.21344 1.21807 1.21222 1.19320 0.92756 0.90977 0.87500 0.94244 1.21843 1.02403 0.95023 0.99881 1.20871 0.96184 0.95910 0.93808 1.20942 0.92100 0.95387 1.00584 1.20997 0.99683 1.01140 0.92681 1.18076 0.93654 0.99834 0.94133 1.20986 0.98404 0.98957 0.93941 1.20711 0.97213 1.01611 0.95394 1.20719 0.93910 1.00462 0.99606 1.20999 0.99102 0.99278 0.93017 1.18073 0.93831 0.99323 0.93696 1.20870 0.98462 1.01014 0.93786 0.89486 0.96046 0.97766 0.98274 0.89429 0.93917 0.91769 0.94090 0.92201 0.84944 0.86236 0.86169 0.86684 0.86659 0.86088 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.52 37.16 0.35 -2.95 16 2 C 0.17 4.17 5.50 -4.04 -0.02 4.15 16 3 N -0.59 -13.88 2.07 -166.99 -0.35 -14.22 16 4 C -0.25 -6.33 8.70 -15.06 -0.13 -6.46 16 5 H 0.08 1.91 5.77 -52.49 -0.30 1.60 16 6 C 0.00 -0.10 5.04 -17.43 -0.09 -0.19 16 7 N -0.90 -24.75 8.34 55.49 0.46 -24.29 16 8 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.20 4.07 3.17 -69.08 -0.22 3.85 16 13 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 14 C -0.13 -2.45 7.86 37.16 0.29 -2.16 16 15 C -0.07 -1.20 4.19 -104.97 -0.44 -1.64 16 16 C -0.07 -1.32 9.09 -39.93 -0.36 -1.68 16 17 C -0.13 -2.06 9.77 -39.49 -0.39 -2.45 16 18 C -0.06 -0.90 5.74 -106.83 -0.61 -1.51 16 19 C -0.10 -1.40 9.77 -39.49 -0.39 -1.78 16 20 C -0.13 -1.57 9.95 -39.93 -0.40 -1.97 16 21 C -0.13 -1.55 9.95 -39.93 -0.40 -1.95 16 22 C -0.11 -1.43 9.77 -39.48 -0.39 -1.81 16 23 C -0.05 -0.78 5.74 -106.83 -0.61 -1.40 16 24 C -0.12 -2.05 9.36 -39.49 -0.37 -2.42 16 25 H 0.09 2.29 6.45 -51.93 -0.33 1.96 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 29 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.06 1.23 7.91 -51.93 -0.41 0.82 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.11 6.84 -51.93 -0.36 0.76 16 34 H 0.13 2.62 7.69 -52.49 -0.40 2.21 16 35 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.12 1.79 7.95 -52.49 -0.42 1.38 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -27.53 321.51 -10.09 -37.62 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.85 Total: 2.32 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -4.17 Total: -22.38 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.12 Total: -38.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.53 -10.09 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.573 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds