Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47469 * 2 1 4 4 C 1.52994 * 109.47261 * 239.99269 * 2 1 3 5 5 C 1.50697 * 109.47534 * 175.00269 * 4 2 1 6 6 H 1.08001 * 119.99710 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00220 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99770 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00140 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47172 * 89.99699 * 9 7 5 11 11 H 1.48498 * 109.46978 * 210.00259 * 9 7 5 12 12 H 1.48499 * 109.46996 * 329.99831 * 9 7 5 13 13 N 1.46908 * 109.46825 * 119.99226 * 2 1 3 14 14 C 1.46831 * 110.99682 * 58.95553 * 13 2 1 15 15 C 1.53025 * 109.53374 * 174.20954 * 14 13 2 16 16 C 1.53053 * 109.33510 * 59.09931 * 15 14 13 17 17 C 1.53456 * 109.03422 * 302.09390 * 16 15 14 18 18 C 1.52568 * 109.40200 * 177.65538 * 17 16 15 19 19 C 1.54179 * 112.70819 * 120.49629 * 18 17 16 20 20 S 1.83939 * 102.58767 * 24.49245 * 19 18 17 21 21 C 1.54525 * 108.34704 * 300.39036 * 17 16 15 22 22 C 1.46806 * 111.00333 * 294.70438 * 13 2 1 23 23 H 1.09007 * 109.46803 * 300.00661 * 1 2 3 24 24 H 1.08996 * 109.46717 * 60.00636 * 1 2 3 25 25 H 1.08996 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46989 * 295.00377 * 4 2 1 27 27 H 1.08999 * 109.47068 * 55.00013 * 4 2 1 28 28 H 0.97009 * 119.99892 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.45866 * 294.22616 * 14 13 2 30 30 H 1.09004 * 109.46112 * 54.19766 * 14 13 2 31 31 H 1.08997 * 109.49705 * 179.03244 * 15 14 13 32 32 H 1.09000 * 109.49368 * 299.13013 * 15 14 13 33 33 H 1.08999 * 109.54767 * 182.22741 * 16 15 14 34 34 H 1.09000 * 109.61810 * 62.00055 * 16 15 14 35 35 H 1.09000 * 108.85026 * 241.34409 * 18 17 16 36 36 H 1.09004 * 108.84510 * 359.65044 * 18 17 16 37 37 H 1.09003 * 110.78751 * 142.76502 * 19 18 17 38 38 H 1.08998 * 110.79095 * 266.22103 * 19 18 17 39 39 H 1.09001 * 110.77606 * 332.60651 * 21 17 16 40 40 H 1.09003 * 110.77786 * 96.02868 * 21 17 16 41 41 H 1.09005 * 109.48749 * 306.11762 * 22 13 2 42 42 H 1.09005 * 109.48513 * 66.14897 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2303 -1.1930 -2.3581 8 7 5.5411 -1.1007 -2.4132 9 14 3.3015 -2.1082 -3.6956 10 1 2.9397 -1.1632 -4.7824 11 1 4.1603 -3.1884 -4.2442 12 1 2.0659 -2.7008 -3.1233 13 7 2.0197 -0.6924 1.1996 14 6 1.5285 -2.0753 1.2462 15 6 2.1713 -2.8071 2.4264 16 6 1.8227 -2.0773 3.7258 17 6 2.3118 -0.6258 3.6313 18 6 1.9170 0.1256 4.8990 19 6 3.1332 0.6939 5.6572 20 16 4.3953 0.8530 4.3286 21 6 3.8412 -0.6413 3.4109 22 6 1.6550 0.0426 2.4170 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7516 -1.7716 -1.2053 27 1 1.6054 -0.2620 -2.1369 28 1 6.0254 -1.5069 -3.1490 29 1 0.4452 -2.0720 1.3674 30 1 1.7885 -2.5845 0.3181 31 1 1.7933 -3.8285 2.4707 32 1 3.2535 -2.8244 2.2979 33 1 2.3113 -2.5728 4.5648 34 1 0.7429 -2.0893 3.8739 35 1 1.2547 0.9481 4.6291 36 1 1.3778 -0.5549 5.5582 37 1 2.9001 1.6678 6.0878 38 1 3.4681 -0.0007 6.4275 39 1 4.2839 -1.5422 3.8357 40 1 4.0800 -0.5547 2.3509 41 1 2.0017 1.0729 2.3373 42 1 0.5717 0.0318 2.5375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411812627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = -6.341933 kcal Electronic energy + Delta-G solvation = -20065.366209 eV Core-core repulsion = 17363.828915 eV Total energy + Delta-G solvation = -2701.537294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78959 -36.38688 -33.25562 -32.30360 -30.30334 -29.50541 -27.82545 -26.86047 -24.36844 -23.77383 -22.35045 -21.27496 -18.80941 -18.21864 -16.58071 -16.47030 -15.52433 -15.27252 -14.75012 -14.24894 -14.21056 -14.07280 -13.51264 -13.06200 -12.86802 -12.68844 -12.37462 -12.27504 -12.00539 -11.75780 -11.70109 -11.40959 -11.35240 -11.18876 -10.82375 -10.66209 -10.56120 -10.41074 -10.16163 -9.85896 -9.62418 -9.56987 -9.47779 -9.00472 -8.42496 -7.53357 -7.47114 -5.90750 -3.85135 2.10624 2.59188 3.34656 3.42892 3.44194 4.33940 4.53625 4.58153 4.68654 4.88514 5.05855 5.10342 5.29830 5.37017 5.42645 5.52907 5.58903 5.62958 5.68186 5.74482 5.78910 5.81325 5.83184 5.93070 5.97952 6.00928 6.05956 6.13077 6.30567 6.39210 6.49901 6.50047 6.60439 6.64307 6.78799 7.12188 7.34715 7.80408 7.82684 7.95996 8.71929 9.22166 9.72064 11.23033 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.006177 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.947763 B = 4532.167229 C = 4995.533467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.076 0.924 4 C -0.008 4.008 5 C -0.491 4.491 6 H 0.079 0.921 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.507 5.507 14 C 0.054 3.946 15 C -0.120 4.120 16 C -0.105 4.105 17 C -0.058 4.058 18 C -0.116 4.116 19 C -0.068 4.068 20 S -0.312 6.312 21 C -0.041 4.041 22 C 0.066 3.934 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.018 0.982 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.022 0.978 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.077 0.923 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 -0.539 14.691 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.094 0.906 4 C -0.046 4.046 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.230 5.230 14 C -0.074 4.074 15 C -0.158 4.158 16 C -0.144 4.144 17 C -0.060 4.060 18 C -0.155 4.155 19 C -0.216 4.216 20 S -0.085 6.085 21 C -0.188 4.188 22 C -0.062 4.062 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.154 0.846 41 H 0.096 0.904 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.516 0.223 14.350 16.688 hybrid contribution -2.173 -1.321 -0.557 2.604 sum -10.689 -1.099 13.793 17.484 Atomic orbital electron populations 1.22559 0.99817 1.01250 1.00961 1.21666 0.89781 0.98625 0.90985 0.90557 1.19725 0.98037 0.95287 0.91532 1.21039 0.89322 1.33837 1.08698 0.90252 1.25006 0.94642 0.96301 0.97762 1.69917 1.06391 1.46103 1.32202 0.86927 0.80156 0.80077 0.82899 1.20621 1.21657 1.19404 1.61915 1.59087 1.01207 1.00784 1.22103 0.95554 0.90356 0.99386 1.21635 1.02492 0.97839 0.93814 1.21823 1.00239 0.94121 0.98196 1.21354 0.94636 0.95665 0.94339 1.22074 0.97620 1.00248 0.95567 1.24039 0.95340 1.04016 0.98244 1.88120 1.48598 1.41211 1.30538 1.24508 0.94647 0.94569 1.05107 1.22267 0.96297 0.98043 0.89600 0.93759 0.92563 0.93002 0.96412 0.96916 0.93083 0.95962 0.89443 0.92106 0.90484 0.92113 0.92343 0.90757 0.91004 0.88363 0.89878 0.90150 0.84583 0.90420 0.95465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 8.50 37.16 0.32 -2.62 16 2 C 0.10 1.85 2.29 -67.71 -0.16 1.70 16 3 H 0.08 1.53 8.07 -51.93 -0.42 1.11 16 4 C -0.01 -0.19 3.34 -27.89 -0.09 -0.29 16 5 C -0.49 -13.58 9.39 -34.44 -0.32 -13.90 16 6 H 0.08 2.42 7.99 -52.49 -0.42 2.00 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.99 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 N -0.51 -8.88 3.23 -226.51 -0.73 -9.61 16 14 C 0.05 0.87 4.64 -3.85 -0.02 0.86 16 15 C -0.12 -1.65 5.80 -26.69 -0.15 -1.81 16 16 C -0.10 -1.23 4.28 -26.47 -0.11 -1.35 16 17 C -0.06 -0.74 0.67 -153.50 -0.10 -0.84 16 18 C -0.12 -1.22 5.69 -26.34 -0.15 -1.37 16 19 C -0.07 -0.73 7.46 37.77 0.28 -0.45 16 20 S -0.31 -4.70 23.26 -107.50 -2.50 -7.20 16 21 C -0.04 -0.61 5.04 37.96 0.19 -0.42 16 22 C 0.07 0.98 3.35 -3.68 -0.01 0.96 16 23 H 0.04 0.62 6.67 -51.92 -0.35 0.28 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.80 6.52 -51.93 -0.34 0.46 16 26 H 0.02 0.41 5.12 -51.93 -0.27 0.15 16 27 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.02 0.34 6.61 -51.93 -0.34 -0.01 16 30 H 0.09 1.64 5.94 -51.93 -0.31 1.33 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.19 7.05 -51.93 -0.37 0.82 16 33 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 36 H 0.07 0.64 7.55 -51.93 -0.39 0.25 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 40 H 0.14 2.55 6.96 -51.93 -0.36 2.19 16 41 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.03 0.38 6.75 -51.93 -0.35 0.03 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -29.74 317.78 -9.98 -39.72 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.21 Total: 0.39 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.43 Total: -17.82 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.04 Total: -36.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.50 Total: -7.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.74 -9.98 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411812627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.380 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds