Wall clock time and date at job start Mon Mar 30 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47539 * 2 1 4 4 C 1.53003 * 109.47559 * 120.00378 * 2 1 3 5 5 C 1.50700 * 109.47388 * 183.02158 * 4 2 1 6 6 H 1.08003 * 119.99381 * 5.14028 * 5 4 2 7 7 C 1.37874 * 120.00048 * 185.14217 * 5 4 2 8 8 N 1.31516 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47164 * 59.99495 * 9 7 5 11 11 H 1.48500 * 109.47030 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46948 * 299.99741 * 9 7 5 13 13 N 1.46908 * 109.47093 * 240.00163 * 2 1 3 14 14 C 1.46831 * 110.99696 * 69.90374 * 13 2 1 15 15 C 1.53018 * 109.52976 * 174.19465 * 14 13 2 16 16 C 1.53058 * 109.32880 * 59.12362 * 15 14 13 17 17 C 1.53436 * 109.04610 * 302.11405 * 16 15 14 18 18 C 1.53197 * 109.05881 * 299.04517 * 17 16 15 19 19 C 1.55079 * 109.01040 * 209.13124 * 18 17 16 20 20 S 1.83973 * 100.87247 * 41.69576 * 19 18 17 21 21 C 1.53937 * 108.71478 * 176.40953 * 17 16 15 22 22 C 1.46810 * 110.99862 * 305.65922 * 13 2 1 23 23 H 1.09002 * 109.46828 * 299.99717 * 1 2 3 24 24 H 1.08994 * 109.47036 * 59.99952 * 1 2 3 25 25 H 1.08996 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46853 * 303.02315 * 4 2 1 27 27 H 1.09005 * 109.47106 * 63.01961 * 4 2 1 28 28 H 0.96992 * 119.99996 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46278 * 294.21238 * 14 13 2 30 30 H 1.09010 * 109.45736 * 54.18435 * 14 13 2 31 31 H 1.09004 * 109.49900 * 179.05917 * 15 14 13 32 32 H 1.09004 * 109.50093 * 299.15903 * 15 14 13 33 33 H 1.09005 * 109.54767 * 182.24228 * 16 15 14 34 34 H 1.09001 * 109.61310 * 62.02642 * 16 15 14 35 35 H 1.08999 * 109.59717 * 329.07920 * 18 17 16 36 36 H 1.09005 * 109.59271 * 89.18196 * 18 17 16 37 37 H 1.08997 * 111.14261 * 283.79704 * 19 18 17 38 38 H 1.09004 * 111.18038 * 159.61164 * 19 18 17 39 39 H 1.08999 * 110.32105 * 242.58389 * 21 17 16 40 40 H 1.09005 * 110.32058 * 4.68843 * 21 17 16 41 41 H 1.08999 * 109.48337 * 306.09103 * 22 13 2 42 42 H 1.09008 * 109.48645 * 66.13238 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5453 -0.6568 1.2872 6 1 4.0799 -0.0819 0.5454 7 6 4.2397 -1.3315 2.2687 8 7 3.5885 -2.0311 3.1722 9 14 6.1053 -1.2509 2.3162 10 1 6.5358 0.1610 2.4783 11 1 6.6065 -2.0552 3.4596 12 1 6.6566 -1.7942 1.0488 13 7 2.0197 -0.6925 -1.1995 14 6 1.7510 0.0959 -2.4087 15 6 2.3996 -0.5833 -3.6168 16 6 1.8313 -1.9963 -3.7692 17 6 2.0899 -2.7820 -2.4770 18 6 3.6008 -2.8722 -2.2403 19 6 3.9134 -4.1774 -1.4633 20 16 2.7976 -5.3652 -2.3170 21 6 1.4369 -4.1703 -2.6039 22 6 1.4417 -2.0381 -1.3030 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6332 -0.2398 2.1383 27 1 1.7217 -1.7635 1.2225 28 1 4.0770 -2.5055 3.8629 29 1 0.6745 0.1650 -2.5655 30 1 2.1655 1.0970 -2.2891 31 1 2.1857 -0.0065 -4.5167 32 1 3.4779 -0.6390 -3.4675 33 1 2.3197 -2.4977 -4.6048 34 1 0.7584 -1.9412 -3.9539 35 1 4.1209 -2.8835 -3.1981 36 1 3.9316 -2.0120 -1.6581 37 1 3.6516 -4.0801 -0.4097 38 1 4.9581 -4.4654 -1.5812 39 1 0.6597 -4.2934 -1.8497 40 1 1.0193 -4.3023 -3.6021 41 1 1.6271 -2.5854 -0.3788 42 1 0.3674 -1.9605 -1.4705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411812628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:21 Heat of formation + Delta-G solvation = -12.816889 kcal Electronic energy + Delta-G solvation = -20398.764736 eV Core-core repulsion = 17696.946667 eV Total energy + Delta-G solvation = -2701.818069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74386 -36.06314 -33.32963 -32.20811 -30.00328 -29.61975 -27.39441 -26.56646 -24.25012 -23.35232 -22.86940 -21.11362 -19.25054 -17.92208 -16.31345 -16.13060 -15.51482 -14.98748 -14.64836 -14.46586 -14.03635 -13.74954 -13.42307 -13.15473 -12.94519 -12.44418 -12.21882 -12.03260 -11.77202 -11.64067 -11.58234 -11.36364 -11.27938 -10.98322 -10.65587 -10.60441 -10.46236 -10.35657 -10.22702 -10.01258 -9.85949 -9.44843 -9.16914 -8.98947 -8.27926 -7.50548 -7.40446 -5.90839 -3.88783 2.20698 2.65108 3.37475 3.42927 3.45079 4.42814 4.53730 4.76380 4.82849 5.05611 5.29777 5.31981 5.39858 5.46209 5.52925 5.56006 5.67266 5.69239 5.77966 5.83838 5.88652 5.90321 5.99064 6.03584 6.07627 6.13087 6.23349 6.30258 6.32754 6.45725 6.54233 6.63242 6.70193 6.82103 6.96115 7.51162 7.65665 7.88628 7.99985 8.09789 8.55050 9.16258 9.72655 11.20849 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.008702 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.893755 B = 3216.796276 C = 4172.488246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.488 4.488 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.506 5.506 14 C 0.052 3.948 15 C -0.116 4.116 16 C -0.104 4.104 17 C -0.058 4.058 18 C -0.108 4.108 19 C -0.055 4.055 20 S -0.329 6.329 21 C -0.055 4.055 22 C 0.068 3.932 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.258 0.742 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 0.118 -12.839 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.527 4.527 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.229 5.229 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.142 4.142 17 C -0.059 4.059 18 C -0.147 4.147 19 C -0.202 4.202 20 S -0.103 6.103 21 C -0.203 4.203 22 C -0.061 4.061 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.714 -1.226 -12.911 13.490 hybrid contribution -0.057 1.170 0.361 1.226 sum -3.771 -0.056 -12.550 13.104 Atomic orbital electron populations 1.22520 0.99860 1.01268 1.00629 1.21911 0.89986 0.98271 0.91927 0.91315 1.19192 0.96400 0.95413 0.89649 1.21058 0.91365 1.29141 1.11103 0.92331 1.24960 0.97703 0.95920 0.95988 1.69943 1.35166 1.32899 1.16224 0.86783 0.86745 0.77846 0.77344 1.20587 1.21703 1.20262 1.61973 1.58338 1.01390 1.01203 1.22083 0.97306 0.97340 0.90953 1.21593 1.01525 0.95267 0.97049 1.21759 1.00368 0.95870 0.96187 1.21304 0.95677 0.92785 0.96154 1.22436 0.93603 0.98493 1.00168 1.24388 0.99701 0.93730 1.02427 1.87513 1.21553 1.23995 1.77229 1.24059 0.97823 0.93870 1.04573 1.22276 0.94595 0.90955 0.98236 0.92613 0.94190 0.92939 0.96816 0.96010 0.93257 0.95861 0.91328 0.92294 0.90824 0.91916 0.92440 0.91883 0.86600 0.88112 0.88402 0.89517 0.88982 0.89193 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.45 37.16 0.31 -2.72 16 2 C 0.09 1.66 2.28 -67.71 -0.15 1.51 16 3 H 0.07 1.35 7.99 -51.93 -0.41 0.93 16 4 C 0.03 0.73 4.34 -27.88 -0.12 0.61 16 5 C -0.49 -12.89 8.78 -34.44 -0.30 -13.19 16 6 H 0.06 1.54 7.75 -52.48 -0.41 1.14 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 9 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.51 -8.74 3.17 -226.53 -0.72 -9.46 16 14 C 0.05 0.74 5.13 -3.85 -0.02 0.72 16 15 C -0.12 -1.45 5.82 -26.69 -0.16 -1.61 16 16 C -0.10 -1.27 4.32 -26.48 -0.11 -1.38 16 17 C -0.06 -0.82 0.66 -153.51 -0.10 -0.92 16 18 C -0.11 -1.68 4.05 -25.53 -0.10 -1.78 16 19 C -0.05 -0.90 7.52 38.26 0.29 -0.61 16 20 S -0.33 -5.19 23.22 -107.50 -2.50 -7.68 16 21 C -0.05 -0.75 6.60 37.65 0.25 -0.50 16 22 C 0.07 1.12 2.91 -3.69 -0.01 1.11 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.59 6.81 -51.93 -0.35 0.23 16 25 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.56 6.29 -51.93 -0.33 0.23 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.02 0.33 6.87 -51.93 -0.36 -0.03 16 30 H 0.07 0.98 8.02 -51.92 -0.42 0.57 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.99 7.20 -51.93 -0.37 0.61 16 33 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 36 H 0.12 2.11 6.88 -51.93 -0.36 1.76 16 37 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.20 7.63 -51.93 -0.40 0.81 16 40 H 0.09 1.11 7.63 -51.93 -0.40 0.72 16 41 H 0.09 1.78 6.14 -51.93 -0.32 1.47 16 42 H 0.03 0.40 6.60 -51.92 -0.34 0.06 16 LS Contribution 322.17 15.07 4.85 4.85 Total: -1.00 -27.63 322.17 -10.27 -37.89 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.29 Total: 1.01 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -0.33 Total: -17.38 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.02 Total: -34.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -2.50 Total: -7.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.63 -10.27 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411812628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.074 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds