Wall clock time and date at job start Mon Mar 30 2020 01:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47539 * 2 1 4 4 C 1.53003 * 109.47559 * 120.00378 * 2 1 3 5 5 C 1.50700 * 109.47388 * 183.02158 * 4 2 1 6 6 H 1.08003 * 119.99381 * 5.14028 * 5 4 2 7 7 C 1.37874 * 120.00048 * 185.14217 * 5 4 2 8 8 N 1.31516 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47164 * 59.99495 * 9 7 5 11 11 H 1.48500 * 109.47030 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46948 * 299.99741 * 9 7 5 13 13 N 1.46908 * 109.47093 * 240.00163 * 2 1 3 14 14 C 1.46831 * 110.99696 * 69.90374 * 13 2 1 15 15 C 1.53018 * 109.52976 * 174.19465 * 14 13 2 16 16 C 1.53058 * 109.32880 * 59.12362 * 15 14 13 17 17 C 1.53436 * 109.04610 * 302.11405 * 16 15 14 18 18 C 1.53197 * 109.05881 * 299.04517 * 17 16 15 19 19 C 1.55079 * 109.01040 * 209.13124 * 18 17 16 20 20 S 1.83973 * 100.87247 * 41.69576 * 19 18 17 21 21 C 1.53937 * 108.71478 * 176.40953 * 17 16 15 22 22 C 1.46810 * 110.99862 * 305.65922 * 13 2 1 23 23 H 1.09002 * 109.46828 * 299.99717 * 1 2 3 24 24 H 1.08994 * 109.47036 * 59.99952 * 1 2 3 25 25 H 1.08996 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46853 * 303.02315 * 4 2 1 27 27 H 1.09005 * 109.47106 * 63.01961 * 4 2 1 28 28 H 0.96992 * 119.99996 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46278 * 294.21238 * 14 13 2 30 30 H 1.09010 * 109.45736 * 54.18435 * 14 13 2 31 31 H 1.09004 * 109.49900 * 179.05917 * 15 14 13 32 32 H 1.09004 * 109.50093 * 299.15903 * 15 14 13 33 33 H 1.09005 * 109.54767 * 182.24228 * 16 15 14 34 34 H 1.09001 * 109.61310 * 62.02642 * 16 15 14 35 35 H 1.08999 * 109.59717 * 329.07920 * 18 17 16 36 36 H 1.09005 * 109.59271 * 89.18196 * 18 17 16 37 37 H 1.08997 * 111.14261 * 283.79704 * 19 18 17 38 38 H 1.09004 * 111.18038 * 159.61164 * 19 18 17 39 39 H 1.08999 * 110.32105 * 242.58389 * 21 17 16 40 40 H 1.09005 * 110.32058 * 4.68843 * 21 17 16 41 41 H 1.08999 * 109.48337 * 306.09103 * 22 13 2 42 42 H 1.09008 * 109.48645 * 66.13238 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5453 -0.6568 1.2872 6 1 4.0799 -0.0819 0.5454 7 6 4.2397 -1.3315 2.2687 8 7 3.5885 -2.0311 3.1722 9 14 6.1053 -1.2509 2.3162 10 1 6.5358 0.1610 2.4783 11 1 6.6065 -2.0552 3.4596 12 1 6.6566 -1.7942 1.0488 13 7 2.0197 -0.6925 -1.1995 14 6 1.7510 0.0959 -2.4087 15 6 2.3996 -0.5833 -3.6168 16 6 1.8313 -1.9963 -3.7692 17 6 2.0899 -2.7820 -2.4770 18 6 3.6008 -2.8722 -2.2403 19 6 3.9134 -4.1774 -1.4633 20 16 2.7976 -5.3652 -2.3170 21 6 1.4369 -4.1703 -2.6039 22 6 1.4417 -2.0381 -1.3030 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6332 -0.2398 2.1383 27 1 1.7217 -1.7635 1.2225 28 1 4.0770 -2.5055 3.8629 29 1 0.6745 0.1650 -2.5655 30 1 2.1655 1.0970 -2.2891 31 1 2.1857 -0.0065 -4.5167 32 1 3.4779 -0.6390 -3.4675 33 1 2.3197 -2.4977 -4.6048 34 1 0.7584 -1.9412 -3.9539 35 1 4.1209 -2.8835 -3.1981 36 1 3.9316 -2.0120 -1.6581 37 1 3.6516 -4.0801 -0.4097 38 1 4.9581 -4.4654 -1.5812 39 1 0.6597 -4.2934 -1.8497 40 1 1.0193 -4.3023 -3.6021 41 1 1.6271 -2.5854 -0.3788 42 1 0.3674 -1.9605 -1.4705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411812628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:20 Heat of formation + Delta-G solvation = -26.812137 kcal Electronic energy + Delta-G solvation = -20399.371616 eV Core-core repulsion = 17696.946667 eV Total energy + Delta-G solvation = -2702.424949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99311 -37.47398 -34.99556 -33.81259 -31.26715 -31.05589 -29.16954 -27.75476 -25.66879 -24.85540 -24.39633 -22.30100 -20.76936 -19.13311 -18.30720 -17.50854 -16.85945 -16.48556 -16.24426 -15.77752 -15.35489 -15.01249 -14.71480 -14.63877 -14.19901 -13.91401 -13.71213 -13.58866 -13.19942 -13.00617 -12.95350 -12.76914 -12.65863 -12.54889 -12.44713 -12.16963 -11.92520 -11.65886 -11.48841 -11.39810 -11.25608 -11.06566 -10.77626 -10.66632 -10.43091 -8.83280 -8.68632 -8.06078 -6.09637 0.97379 1.40101 1.42908 1.43736 1.50970 2.48740 3.11640 3.31044 3.64306 3.66589 3.90704 4.09742 4.18914 4.23710 4.28554 4.30698 4.43597 4.47104 4.54241 4.57577 4.65736 4.68811 4.75220 4.85555 4.91749 4.95996 5.07960 5.09854 5.13259 5.19943 5.24416 5.26402 5.42201 5.45362 5.54811 5.58428 5.74263 5.92918 6.36505 6.51671 6.60339 7.03420 7.55673 9.05559 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.008702 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.893755 B = 3216.796276 C = 4172.488246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.038 3.962 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.939 5.939 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.267 1.267 13 N -0.522 5.522 14 C 0.051 3.949 15 C -0.112 4.112 16 C -0.097 4.097 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.056 4.056 20 S -0.341 6.341 21 C -0.047 4.047 22 C 0.077 3.923 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.047 0.953 26 H -0.016 1.016 27 H -0.004 1.004 28 H 0.256 0.744 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.045 0.955 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 0.797 -15.862 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 H 0.083 0.917 4 C 0.001 3.999 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.581 5.581 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.220 1.220 12 H -0.192 1.192 13 N -0.245 5.245 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.135 4.135 17 C -0.055 4.055 18 C -0.139 4.139 19 C -0.204 4.204 20 S -0.115 6.115 21 C -0.195 4.195 22 C -0.052 4.052 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.002 0.998 27 H 0.014 0.986 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.063 0.937 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.941 -0.533 -15.954 16.442 hybrid contribution -0.021 0.959 1.331 1.641 sum -3.962 0.426 -14.623 15.156 Atomic orbital electron populations 1.22381 0.97579 1.01364 1.01893 1.21601 0.91779 0.97198 0.90800 0.91672 1.19031 0.95356 0.94236 0.91302 1.21346 0.92659 1.28152 1.10427 0.92348 1.25717 1.02069 0.95819 0.95839 1.70083 1.36783 1.34175 1.17092 0.85816 0.81645 0.78021 0.77469 1.19777 1.21959 1.19189 1.61856 1.58959 1.01921 1.01767 1.22178 0.98342 0.97072 0.90096 1.21581 1.00611 0.95674 0.97084 1.21751 1.01657 0.95234 0.94875 1.21265 0.94427 0.93193 0.96596 1.22356 0.94883 0.96452 1.00220 1.24284 1.00504 0.95060 1.00581 1.87530 1.22386 1.24895 1.76695 1.24142 0.96755 0.92570 1.06051 1.22112 0.95380 0.90415 0.97271 0.92769 0.91448 0.93388 0.99753 0.98555 0.93559 0.94590 0.91328 0.89388 0.91946 0.90131 0.90787 0.89931 0.89507 0.91825 0.87534 0.89922 0.86087 0.93696 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 8.45 71.98 0.61 -4.95 16 2 C 0.09 3.64 2.28 44.91 0.10 3.74 16 3 H 0.07 2.54 7.99 -2.39 -0.02 2.52 16 4 C 0.04 1.91 4.34 29.85 0.13 2.04 16 5 C -0.49 -26.56 8.78 25.60 0.22 -26.33 16 6 H 0.06 3.13 7.75 -2.91 -0.02 3.11 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 9 Si 0.94 44.58 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.52 -17.69 3.17 -870.59 -2.76 -20.45 16 14 C 0.05 1.32 5.13 86.32 0.44 1.76 16 15 C -0.11 -2.36 5.82 30.62 0.18 -2.19 16 16 C -0.10 -1.97 4.32 30.76 0.13 -1.83 16 17 C -0.05 -1.42 0.66 -51.53 -0.03 -1.45 16 18 C -0.10 -3.04 4.05 31.37 0.13 -2.91 16 19 C -0.06 -1.88 7.52 72.69 0.55 -1.34 16 20 S -0.34 -10.45 23.22 -56.49 -1.31 -11.77 16 21 C -0.05 -1.19 6.60 72.30 0.48 -0.72 16 22 C 0.08 2.51 2.91 86.44 0.25 2.76 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.80 6.81 -2.39 -0.02 1.78 16 25 H 0.05 1.57 6.47 -2.39 -0.02 1.55 16 26 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 27 H 0.00 -0.21 6.29 -2.38 -0.01 -0.23 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.04 0.86 6.87 -2.39 -0.02 0.84 16 30 H 0.07 1.79 8.02 -2.38 -0.02 1.77 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.49 7.20 -2.38 -0.02 1.47 16 33 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 36 H 0.09 3.19 6.88 -2.38 -0.02 3.17 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.08 2.19 7.63 -2.39 -0.02 2.17 16 40 H 0.12 2.43 7.63 -2.38 -0.02 2.42 16 41 H 0.04 1.87 6.14 -2.39 -0.01 1.86 16 42 H 0.04 1.08 6.60 -2.38 -0.02 1.07 16 Total: -1.00 -61.78 322.17 2.86 -58.91 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.97 Total: 14.20 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 3.65 Total: -30.86 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.47 Total: -77.10 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.31 Total: -11.77 kcal Total: -61.78 2.86 -58.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411812628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.102 kcal (2) G-P(sol) polarization free energy of solvation -61.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds