Wall clock time and date at job start Mon Mar 30 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 C 1.53007 * 109.46634 * 119.99779 * 2 1 3 5 5 C 1.50700 * 109.46886 * 183.90928 * 4 2 1 6 6 H 1.08003 * 119.99949 * 5.08093 * 5 4 2 7 7 C 1.37872 * 120.00159 * 185.07822 * 5 4 2 8 8 N 1.31513 * 120.00091 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00201 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46910 * 59.99893 * 9 7 5 11 11 H 1.48494 * 109.47073 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46762 * 300.00172 * 9 7 5 13 13 N 1.46897 * 109.47379 * 239.99930 * 2 1 3 14 14 C 1.46825 * 111.00295 * 70.97723 * 13 2 1 15 15 C 1.53016 * 109.53954 * 174.21483 * 14 13 2 16 16 C 1.53053 * 109.33738 * 59.09461 * 15 14 13 17 17 C 1.53454 * 109.03427 * 302.09883 * 16 15 14 18 18 C 1.52578 * 109.39938 * 177.65124 * 17 16 15 19 19 C 1.54180 * 112.70432 * 120.49288 * 18 17 16 20 20 S 1.83935 * 102.58789 * 24.49647 * 19 18 17 21 21 C 1.54521 * 108.34773 * 300.38422 * 17 16 15 22 22 C 1.46816 * 110.99875 * 306.72482 * 13 2 1 23 23 H 1.08999 * 109.47664 * 300.00614 * 1 2 3 24 24 H 1.09007 * 109.46952 * 60.00453 * 1 2 3 25 25 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47339 * 303.90316 * 4 2 1 27 27 H 1.08997 * 109.47248 * 63.91170 * 4 2 1 28 28 H 0.96993 * 120.00402 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.45902 * 294.22884 * 14 13 2 30 30 H 1.08997 * 109.45645 * 54.19471 * 14 13 2 31 31 H 1.09000 * 109.49989 * 179.03644 * 15 14 13 32 32 H 1.09008 * 109.49281 * 299.12936 * 15 14 13 33 33 H 1.08997 * 109.54951 * 182.23106 * 16 15 14 34 34 H 1.08997 * 109.61552 * 62.00767 * 16 15 14 35 35 H 1.08995 * 108.85087 * 241.34849 * 18 17 16 36 36 H 1.09000 * 108.84480 * 359.65403 * 18 17 16 37 37 H 1.09011 * 110.78352 * 142.76355 * 19 18 17 38 38 H 1.08996 * 110.79259 * 266.22053 * 19 18 17 39 39 H 1.08998 * 110.77365 * 332.61116 * 21 17 16 40 40 H 1.08996 * 110.77169 * 96.02982 * 21 17 16 41 41 H 1.08997 * 109.48728 * 306.11968 * 22 13 2 42 42 H 1.08999 * 109.48360 * 66.15319 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5438 -0.6379 1.2988 6 1 4.0767 -0.0535 0.5634 7 6 4.2393 -1.3078 2.2828 8 7 3.5905 -2.0199 3.1781 9 14 6.1036 -1.2051 2.3437 10 1 6.5160 0.2112 2.5137 11 1 6.6065 -2.0083 3.4870 12 1 6.6701 -1.7372 1.0783 13 7 2.0197 -0.6925 -1.1994 14 6 1.7739 0.1072 -2.4060 15 6 2.4223 -0.5746 -3.6127 16 6 1.8342 -1.9778 -3.7785 17 6 2.0705 -2.7752 -2.4888 18 6 1.4361 -4.1562 -2.6234 19 6 2.4602 -5.2989 -2.4723 20 16 3.7924 -4.5140 -1.4761 21 6 3.5930 -2.8513 -2.2361 22 6 1.4223 -2.0285 -1.3163 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6205 -0.2494 2.1379 27 1 1.7349 -1.7671 1.2150 28 1 4.0798 -2.4915 3.8701 29 1 0.7001 0.1939 -2.5716 30 1 2.2027 1.1009 -2.2765 31 1 2.2249 0.0107 -4.5108 32 1 3.4984 -0.6474 -3.4545 33 1 2.3220 -2.4814 -4.6131 34 1 0.7639 -1.9056 -3.9715 35 1 0.6688 -4.2675 -1.8573 36 1 0.9649 -4.2333 -3.6033 37 1 2.0228 -6.1420 -1.9373 38 1 2.8381 -5.6110 -3.4458 39 1 4.1443 -2.7863 -3.1742 40 1 3.9098 -2.0699 -1.5454 41 1 1.5907 -2.5841 -0.3937 42 1 0.3510 -1.9336 -1.4931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411812629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:22 Heat of formation + Delta-G solvation = -25.990242 kcal Electronic energy + Delta-G solvation = -20330.421745 eV Core-core repulsion = 17628.032436 eV Total energy + Delta-G solvation = -2702.389309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94766 -37.50596 -35.04621 -33.93600 -31.07898 -30.82906 -29.09102 -28.08663 -25.64919 -24.92377 -24.58809 -21.92735 -20.61849 -19.29040 -18.31586 -17.67190 -16.78267 -16.53328 -16.07771 -15.82684 -15.33741 -15.04390 -14.91974 -14.38222 -14.08865 -14.07538 -13.66039 -13.59002 -13.21031 -12.99675 -12.81902 -12.70483 -12.57925 -12.53774 -12.45172 -12.22886 -11.92352 -11.79009 -11.56844 -11.25380 -11.17145 -11.07076 -10.75263 -10.57459 -10.42770 -8.80985 -8.61440 -8.06602 -6.08980 1.10141 1.37418 1.41631 1.46619 1.58992 2.47235 3.13277 3.31826 3.61752 3.69593 3.91512 4.12097 4.18546 4.22180 4.31106 4.36168 4.43113 4.47998 4.57735 4.66349 4.71641 4.75674 4.77632 4.85925 4.89789 4.98995 5.06337 5.08890 5.13170 5.18585 5.24040 5.26434 5.35809 5.44096 5.53776 5.56731 5.75261 5.93434 6.36796 6.53731 6.62284 7.03260 7.55770 9.05304 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.008942 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.878700 B = 3130.660080 C = 4063.828819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.063 0.937 4 C 0.040 3.960 5 C -0.488 4.488 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.941 3.059 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.051 3.949 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.053 4.053 18 C -0.114 4.114 19 C -0.044 4.044 20 S -0.400 6.400 21 C -0.023 4.023 22 C 0.078 3.922 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.048 0.952 26 H -0.015 1.015 27 H -0.004 1.004 28 H 0.255 0.745 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -1.059 -18.123 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 H 0.082 0.918 4 C 0.003 3.997 5 C -0.526 4.526 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.577 5.577 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.251 5.251 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.136 4.136 17 C -0.055 4.055 18 C -0.153 4.153 19 C -0.192 4.192 20 S -0.173 6.173 21 C -0.170 4.170 22 C -0.050 4.050 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.003 0.997 27 H 0.014 0.986 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.496 -1.653 -17.050 17.991 hybrid contribution -0.321 0.385 0.232 0.552 sum -5.817 -1.268 -16.818 17.841 Atomic orbital electron populations 1.22368 0.97377 1.01411 1.01897 1.21582 0.91915 0.97040 0.90773 0.91835 1.19005 0.95071 0.94289 0.91350 1.21307 0.92957 1.27940 1.10426 0.92778 1.25671 1.01807 0.95762 0.96001 1.70061 1.36630 1.33742 1.17301 0.85858 0.82084 0.78124 0.77104 1.19229 1.21632 1.20384 1.61831 1.58993 1.02385 1.01891 1.22169 0.98497 0.96856 0.90150 1.21612 1.00316 0.96193 0.97130 1.21805 1.01862 0.94994 0.94960 1.21389 0.92252 0.95573 0.96306 1.22062 0.98077 0.90597 1.04526 1.24150 0.93736 1.00086 1.01216 1.88659 1.53829 1.15585 1.59259 1.24330 0.98485 0.92478 1.01747 1.22126 0.95132 0.90197 0.97524 0.92748 0.91396 0.93302 0.99694 0.98582 0.93616 0.94424 0.91581 0.89205 0.92350 0.89791 0.90429 0.91420 0.87372 0.87509 0.87357 0.88781 0.88741 0.93589 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 8.44 71.98 0.61 -5.04 16 2 C 0.10 3.81 2.26 44.92 0.10 3.91 16 3 H 0.06 2.58 7.97 -2.39 -0.02 2.56 16 4 C 0.04 2.10 4.37 29.85 0.13 2.23 16 5 C -0.49 -28.02 8.81 25.60 0.23 -27.80 16 6 H 0.05 3.07 7.75 -2.91 -0.02 3.05 16 7 C 0.00 0.23 5.46 84.65 0.46 0.70 16 8 N -0.94 -59.24 13.29 21.45 0.28 -58.95 16 9 Si 0.94 47.59 29.54 68.60 2.03 49.62 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 12 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 13 N -0.53 -18.71 3.16 -870.61 -2.75 -21.45 16 14 C 0.05 1.36 5.15 86.32 0.44 1.81 16 15 C -0.11 -2.46 5.80 30.62 0.18 -2.28 16 16 C -0.10 -1.89 4.28 30.76 0.13 -1.75 16 17 C -0.05 -1.41 0.67 -51.52 -0.03 -1.44 16 18 C -0.11 -2.51 5.69 30.85 0.18 -2.33 16 19 C -0.04 -1.05 7.46 72.38 0.54 -0.51 16 20 S -0.40 -14.76 23.26 -56.49 -1.31 -16.08 16 21 C -0.02 -0.75 5.04 72.50 0.37 -0.39 16 22 C 0.08 2.64 2.84 86.45 0.25 2.88 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 1.84 6.85 -2.38 -0.02 1.83 16 25 H 0.05 1.63 6.46 -2.39 -0.02 1.61 16 26 H -0.02 -0.87 8.14 -2.39 -0.02 -0.88 16 27 H 0.00 -0.24 6.29 -2.39 -0.02 -0.25 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.04 0.91 6.90 -2.39 -0.02 0.90 16 30 H 0.07 1.79 8.00 -2.39 -0.02 1.78 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.44 7.05 -2.38 -0.02 1.42 16 33 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.62 7.55 -2.39 -0.02 1.60 16 36 H 0.11 1.63 7.54 -2.39 -0.02 1.61 16 37 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.09 2.64 7.63 -2.39 -0.02 2.62 16 40 H 0.09 3.97 6.96 -2.39 -0.02 3.95 16 41 H 0.05 2.02 6.17 -2.39 -0.01 2.00 16 42 H 0.04 1.15 6.59 -2.39 -0.02 1.13 16 Total: -1.00 -69.17 321.84 2.79 -66.38 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.97 Total: 10.50 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.57 Total: -30.01 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.46 Total: -80.40 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: -14.76 SS G_CDS: -1.31 Total: -16.08 kcal Total: -69.17 2.79 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411812629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.386 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds