Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47301 * 2 1 4 4 C 1.53002 * 109.47122 * 119.99740 * 2 1 3 5 5 C 1.50701 * 109.47219 * 182.87738 * 4 2 1 6 6 H 1.07998 * 120.00003 * 5.07692 * 5 4 2 7 7 C 1.37876 * 119.99916 * 185.07337 * 5 4 2 8 8 N 1.31514 * 119.99794 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00294 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46870 * 89.99992 * 9 7 5 11 11 H 1.48498 * 109.47323 * 209.99934 * 9 7 5 12 12 H 1.48501 * 109.46985 * 330.00393 * 9 7 5 13 13 N 1.46900 * 109.47123 * 239.99604 * 2 1 3 14 14 C 1.46783 * 110.99759 * 79.98091 * 13 2 1 15 15 C 1.51350 * 107.69826 * 139.92114 * 14 13 2 16 16 S 1.82209 * 109.59324 * 97.27180 * 15 14 13 17 17 C 1.82718 * 103.71397 * 320.25071 * 16 15 14 18 18 C 1.53694 * 112.15035 * 90.99263 * 17 16 15 19 19 C 1.53795 * 87.03848 * 138.24710 * 18 17 16 20 20 C 1.53606 * 112.29019 * 187.35886 * 17 16 15 21 21 C 1.51008 * 114.16419 * 319.37494 * 17 16 15 22 22 C 1.39518 * 111.00134 * 309.26182 * 13 2 1 23 23 H 1.08999 * 109.47003 * 305.79463 * 1 2 3 24 24 H 1.08992 * 109.47163 * 65.79507 * 1 2 3 25 25 H 1.09004 * 109.47287 * 185.79756 * 1 2 3 26 26 H 1.09000 * 109.47458 * 302.88445 * 4 2 1 27 27 H 1.09000 * 109.47041 * 62.88254 * 4 2 1 28 28 H 0.97004 * 120.00067 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.81662 * 259.47220 * 14 13 2 30 30 H 1.08995 * 109.81200 * 20.37621 * 14 13 2 31 31 H 1.09003 * 109.45441 * 337.23889 * 15 14 13 32 32 H 1.08997 * 109.42851 * 217.29402 * 15 14 13 33 33 H 1.08998 * 113.61904 * 252.78545 * 18 17 16 34 34 H 1.09002 * 113.61742 * 23.70651 * 18 17 16 35 35 H 1.09001 * 113.60148 * 220.20555 * 19 18 17 36 36 H 1.08994 * 113.68102 * 89.34801 * 19 18 17 37 37 H 1.09000 * 113.61650 * 336.44077 * 20 17 16 38 38 H 1.09000 * 113.61401 * 107.26020 * 20 17 16 39 39 H 1.08999 * 109.40168 * 332.37689 * 21 17 16 40 40 H 1.08994 * 109.34083 * 212.57620 * 21 17 16 41 41 H 1.09000 * 108.89609 * 315.40048 * 22 13 2 42 42 H 1.09006 * 108.89568 * 73.89430 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5454 -0.6597 1.2855 6 1 4.0805 -0.0876 0.5421 7 6 4.2394 -1.3339 2.2678 8 7 5.5530 -1.2798 2.2996 9 14 3.3139 -2.3240 3.5533 10 1 3.1352 -3.7171 3.0709 11 1 4.0870 -2.3345 4.8211 12 1 1.9837 -1.7075 3.7897 13 7 2.0197 -0.6926 -1.1994 14 6 1.9702 0.1883 -2.3725 15 6 3.2248 -0.0546 -3.1835 16 16 2.8621 -1.2209 -4.5355 17 6 1.7481 -2.4463 -3.7633 18 6 0.2681 -2.0611 -3.9160 19 6 -0.0038 -3.5438 -4.2209 20 6 1.4577 -3.6357 -4.6910 21 6 2.1393 -2.8383 -2.3585 22 6 1.4092 -1.9391 -1.3413 23 1 -0.3633 0.6011 0.8336 24 1 -0.3633 0.4213 -0.9372 25 1 -0.3634 -1.0224 0.1038 26 1 1.6351 -0.2381 2.1385 27 1 1.7195 -1.7627 1.2239 28 1 6.0414 -1.7544 2.9905 29 1 1.0911 -0.0451 -2.9730 30 1 1.9336 1.2293 -2.0514 31 1 3.9977 -0.4744 -2.5396 32 1 3.5742 0.8892 -3.6022 33 1 -0.1907 -1.7143 -2.9901 34 1 0.0740 -1.3989 -4.7598 35 1 -0.7296 -3.6993 -5.0191 36 1 -0.2155 -4.1414 -3.3342 37 1 1.5916 -3.4075 -5.7484 38 1 1.9577 -4.5563 -4.3901 39 1 3.2162 -2.7224 -2.2368 40 1 1.8650 -3.8788 -2.1845 41 1 1.3978 -2.4388 -0.3727 42 1 0.3812 -1.7929 -1.6732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411875113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = 35.983796 kcal Electronic energy + Delta-G solvation = -20141.253820 eV Core-core repulsion = 17441.551907 eV Total energy + Delta-G solvation = -2699.701913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10683 -37.95847 -33.47894 -31.94291 -31.18641 -28.67299 -27.70615 -26.17655 -25.00374 -23.06805 -22.56193 -21.20421 -19.34994 -18.09329 -16.86425 -16.60099 -16.08355 -15.64117 -14.89780 -14.39679 -14.09881 -13.86002 -13.36357 -13.20200 -12.81028 -12.59952 -12.41255 -12.27777 -12.23524 -11.91812 -11.85173 -11.48354 -11.25611 -11.17723 -10.74868 -10.69159 -10.45571 -10.35488 -10.10460 -9.98796 -9.74064 -9.55641 -9.30144 -9.05137 -8.44559 -7.40583 -7.40244 -5.93501 -3.87481 2.04763 2.79402 3.32408 3.40923 3.42418 4.35826 4.44078 4.51426 4.54404 4.73207 4.81946 5.21623 5.38886 5.40535 5.44417 5.47471 5.58224 5.61693 5.65212 5.68795 5.72925 5.78347 5.82136 5.85042 5.89018 5.96640 6.03325 6.18851 6.24619 6.32428 6.39118 6.46069 6.49982 6.59513 6.75203 7.13825 7.24441 7.79000 7.92144 8.10656 8.68417 9.17733 9.69447 11.20491 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.006189 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.636408 B = 4522.887577 C = 4597.241345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.488 4.488 6 H 0.077 0.923 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.535 5.535 14 C 0.064 3.936 15 C -0.069 4.069 16 S -0.297 6.297 17 C -0.026 4.026 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.102 4.102 22 C 0.074 3.926 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 -1.639 -12.137 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.003 4.003 3 H 0.093 0.907 4 C -0.044 4.044 5 C -0.527 4.527 6 H 0.095 0.905 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.258 5.258 14 C -0.064 4.064 15 C -0.218 4.218 16 S -0.067 6.067 17 C -0.136 4.136 18 C -0.177 4.177 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.055 4.055 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.678 -1.734 -13.040 16.943 hybrid contribution -1.385 -0.476 1.831 2.345 sum -12.063 -2.210 -11.209 16.615 Atomic orbital electron populations 1.22561 0.99494 1.01487 1.00731 1.21703 0.89860 0.98062 0.90633 0.90716 1.19710 0.98119 0.94877 0.91721 1.20983 0.88980 1.30278 1.12425 0.90478 1.24996 0.94635 0.96588 0.97500 1.69906 1.06077 1.44025 1.34684 0.86922 0.80322 0.80995 0.81797 1.20615 1.21635 1.19409 1.57731 1.61963 1.03105 1.02964 1.22001 0.95498 0.97233 0.91700 1.23459 1.02194 0.99107 0.97023 1.86668 1.65108 1.31573 1.23302 1.23870 0.95022 0.96329 0.98365 1.23606 0.94442 0.96879 1.02733 1.22797 0.96321 0.97021 1.01383 1.22873 0.96313 0.96705 0.99129 1.21568 1.02932 0.99382 0.90284 1.20910 0.94455 0.90521 0.99623 0.92522 0.93932 0.92912 0.96571 0.96938 0.93065 0.93200 0.90549 0.87617 0.88858 0.89869 0.89440 0.91297 0.89926 0.89692 0.90688 0.89435 0.90772 0.89919 0.95778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 8.29 37.16 0.31 -2.47 16 2 C 0.10 1.93 2.18 -67.71 -0.15 1.78 16 3 H 0.07 1.42 7.51 -51.93 -0.39 1.03 16 4 C -0.01 -0.15 3.45 -27.88 -0.10 -0.25 16 5 C -0.49 -13.41 9.34 -34.44 -0.32 -13.73 16 6 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 9 Si 0.87 21.59 27.37 -169.99 -4.65 16.94 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 13 N -0.54 -9.34 3.27 -232.77 -0.76 -10.10 16 14 C 0.06 0.97 4.93 -4.72 -0.02 0.95 16 15 C -0.07 -1.07 6.07 36.32 0.22 -0.85 16 16 S -0.30 -4.40 21.20 -107.50 -2.28 -6.68 16 17 C -0.03 -0.35 0.82 -90.95 -0.07 -0.42 16 18 C -0.14 -1.60 5.33 -25.96 -0.14 -1.74 16 19 C -0.14 -1.37 7.78 -25.90 -0.20 -1.57 16 20 C -0.11 -1.26 7.09 -26.00 -0.18 -1.44 16 21 C -0.10 -1.55 4.95 -27.13 -0.13 -1.68 16 22 C 0.07 1.19 3.69 -7.02 -0.03 1.17 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.58 7.77 -51.93 -0.40 0.17 16 25 H 0.05 0.78 6.99 -51.93 -0.36 0.42 16 26 H 0.02 0.37 7.55 -51.93 -0.39 -0.02 16 27 H 0.01 0.29 5.43 -51.93 -0.28 0.00 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.05 0.71 5.07 -51.93 -0.26 0.44 16 30 H 0.08 1.11 7.31 -51.93 -0.38 0.73 16 31 H 0.11 1.94 7.88 -51.93 -0.41 1.53 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.02 4.77 -51.93 -0.25 0.77 16 34 H 0.09 1.01 8.04 -51.93 -0.42 0.60 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.08 0.95 8.05 -51.93 -0.42 0.54 16 38 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 39 H 0.09 1.57 7.83 -51.93 -0.41 1.17 16 40 H 0.07 1.01 7.68 -51.93 -0.40 0.62 16 41 H 0.08 1.50 5.84 -51.93 -0.30 1.20 16 42 H 0.02 0.36 3.82 -51.93 -0.20 0.16 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -29.32 314.47 -10.05 -39.37 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.96 Total: 1.44 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -0.92 Total: -18.56 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.01 Total: -37.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.65 Total: 16.94 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.28 Total: -6.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.32 -10.05 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411875113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.357 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds