Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47301 * 2 1 4 4 C 1.53002 * 109.47122 * 119.99740 * 2 1 3 5 5 C 1.50701 * 109.47219 * 182.87738 * 4 2 1 6 6 H 1.07998 * 120.00003 * 5.07692 * 5 4 2 7 7 C 1.37876 * 119.99916 * 185.07337 * 5 4 2 8 8 N 1.31514 * 119.99794 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00294 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46870 * 89.99992 * 9 7 5 11 11 H 1.48498 * 109.47323 * 209.99934 * 9 7 5 12 12 H 1.48501 * 109.46985 * 330.00393 * 9 7 5 13 13 N 1.46900 * 109.47123 * 239.99604 * 2 1 3 14 14 C 1.46783 * 110.99759 * 79.98091 * 13 2 1 15 15 C 1.51350 * 107.69826 * 139.92114 * 14 13 2 16 16 S 1.82209 * 109.59324 * 97.27180 * 15 14 13 17 17 C 1.82718 * 103.71397 * 320.25071 * 16 15 14 18 18 C 1.53694 * 112.15035 * 90.99263 * 17 16 15 19 19 C 1.53795 * 87.03848 * 138.24710 * 18 17 16 20 20 C 1.53606 * 112.29019 * 187.35886 * 17 16 15 21 21 C 1.51008 * 114.16419 * 319.37494 * 17 16 15 22 22 C 1.39518 * 111.00134 * 309.26182 * 13 2 1 23 23 H 1.08999 * 109.47003 * 305.79463 * 1 2 3 24 24 H 1.08992 * 109.47163 * 65.79507 * 1 2 3 25 25 H 1.09004 * 109.47287 * 185.79756 * 1 2 3 26 26 H 1.09000 * 109.47458 * 302.88445 * 4 2 1 27 27 H 1.09000 * 109.47041 * 62.88254 * 4 2 1 28 28 H 0.97004 * 120.00067 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.81662 * 259.47220 * 14 13 2 30 30 H 1.08995 * 109.81200 * 20.37621 * 14 13 2 31 31 H 1.09003 * 109.45441 * 337.23889 * 15 14 13 32 32 H 1.08997 * 109.42851 * 217.29402 * 15 14 13 33 33 H 1.08998 * 113.61904 * 252.78545 * 18 17 16 34 34 H 1.09002 * 113.61742 * 23.70651 * 18 17 16 35 35 H 1.09001 * 113.60148 * 220.20555 * 19 18 17 36 36 H 1.08994 * 113.68102 * 89.34801 * 19 18 17 37 37 H 1.09000 * 113.61650 * 336.44077 * 20 17 16 38 38 H 1.09000 * 113.61401 * 107.26020 * 20 17 16 39 39 H 1.08999 * 109.40168 * 332.37689 * 21 17 16 40 40 H 1.08994 * 109.34083 * 212.57620 * 21 17 16 41 41 H 1.09000 * 108.89609 * 315.40048 * 22 13 2 42 42 H 1.09006 * 108.89568 * 73.89430 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5454 -0.6597 1.2855 6 1 4.0805 -0.0876 0.5421 7 6 4.2394 -1.3339 2.2678 8 7 5.5530 -1.2798 2.2996 9 14 3.3139 -2.3240 3.5533 10 1 3.1352 -3.7171 3.0709 11 1 4.0870 -2.3345 4.8211 12 1 1.9837 -1.7075 3.7897 13 7 2.0197 -0.6926 -1.1994 14 6 1.9702 0.1883 -2.3725 15 6 3.2248 -0.0546 -3.1835 16 16 2.8621 -1.2209 -4.5355 17 6 1.7481 -2.4463 -3.7633 18 6 0.2681 -2.0611 -3.9160 19 6 -0.0038 -3.5438 -4.2209 20 6 1.4577 -3.6357 -4.6910 21 6 2.1393 -2.8383 -2.3585 22 6 1.4092 -1.9391 -1.3413 23 1 -0.3633 0.6011 0.8336 24 1 -0.3633 0.4213 -0.9372 25 1 -0.3634 -1.0224 0.1038 26 1 1.6351 -0.2381 2.1385 27 1 1.7195 -1.7627 1.2239 28 1 6.0414 -1.7544 2.9905 29 1 1.0911 -0.0451 -2.9730 30 1 1.9336 1.2293 -2.0514 31 1 3.9977 -0.4744 -2.5396 32 1 3.5742 0.8892 -3.6022 33 1 -0.1907 -1.7143 -2.9901 34 1 0.0740 -1.3989 -4.7598 35 1 -0.7296 -3.6993 -5.0191 36 1 -0.2155 -4.1414 -3.3342 37 1 1.5916 -3.4075 -5.7484 38 1 1.9577 -4.5563 -4.3901 39 1 3.2162 -2.7224 -2.2368 40 1 1.8650 -3.8788 -2.1845 41 1 1.3978 -2.4388 -0.3727 42 1 0.3812 -1.7929 -1.6732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411875113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = 19.613024 kcal Electronic energy + Delta-G solvation = -20141.963710 eV Core-core repulsion = 17441.551907 eV Total energy + Delta-G solvation = -2700.411803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26182 -39.15450 -35.25325 -33.75802 -32.40864 -30.31058 -29.13910 -27.15489 -26.05153 -24.85322 -23.69388 -22.68085 -20.68090 -19.23896 -18.75725 -17.94102 -17.25588 -16.91958 -16.48095 -15.90428 -15.45124 -15.10283 -14.68075 -14.56037 -14.42011 -13.91376 -13.76701 -13.61263 -13.34322 -13.30494 -13.19086 -12.93702 -12.66425 -12.43850 -12.30100 -12.04189 -11.70485 -11.68654 -11.55847 -11.39690 -11.16852 -11.05156 -11.02042 -10.65839 -10.47278 -8.70597 -8.60155 -8.16605 -6.14684 0.89963 1.35719 1.37645 1.48138 1.61952 2.41655 3.03424 3.22839 3.41253 3.60464 3.78816 3.85635 4.03427 4.09273 4.23019 4.26798 4.33731 4.43318 4.54103 4.55486 4.60940 4.66421 4.76468 4.80171 4.82756 4.88460 4.99734 5.05502 5.07475 5.11073 5.15117 5.21432 5.23260 5.31814 5.38472 5.49424 5.53486 5.76547 6.39103 6.54654 6.80366 6.93102 7.45617 9.00923 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.006189 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.636408 B = 4522.887577 C = 4597.241345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H 0.063 0.937 4 C -0.005 4.005 5 C -0.482 4.482 6 H 0.033 0.967 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.941 3.059 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.246 1.246 13 N -0.560 5.560 14 C 0.073 3.927 15 C -0.065 4.065 16 S -0.311 6.311 17 C -0.032 4.032 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.097 4.097 22 C 0.076 3.924 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.259 0.741 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -2.421 -12.764 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.000 4.000 3 H 0.081 0.919 4 C -0.042 4.042 5 C -0.521 4.521 6 H 0.052 0.948 7 C -0.198 4.198 8 N -0.602 5.602 9 Si 0.766 3.234 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.170 1.170 13 N -0.283 5.283 14 C -0.056 4.056 15 C -0.214 4.214 16 S -0.081 6.081 17 C -0.141 4.141 18 C -0.170 4.170 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.136 4.136 22 C -0.052 4.052 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.163 -2.507 -13.681 19.851 hybrid contribution -0.204 -0.200 1.948 1.969 sum -14.366 -2.708 -11.733 18.745 Atomic orbital electron populations 1.22407 0.96091 1.02270 1.02306 1.21514 0.92464 0.96729 0.89274 0.91861 1.19665 0.94570 0.95802 0.94194 1.21243 0.91688 1.28524 1.10627 0.94821 1.25918 0.95402 0.98250 1.00242 1.70087 1.08156 1.45928 1.36056 0.85803 0.79699 0.79480 0.78447 1.19855 1.21802 1.16996 1.57581 1.63174 1.04016 1.03555 1.21977 0.95692 0.97060 0.90824 1.23346 1.01484 0.99698 0.96886 1.86680 1.66202 1.32156 1.23054 1.24040 0.95640 0.96931 0.97521 1.23564 0.92302 0.98278 1.02824 1.22766 0.95585 0.95525 1.02245 1.22915 0.97459 0.95673 0.98803 1.21463 1.00351 1.00221 0.91577 1.20889 0.95864 0.89728 0.98757 0.91657 0.91819 0.92328 0.96269 0.96430 0.93224 0.91426 0.89983 0.91600 0.87659 0.90017 0.88895 0.89208 0.89242 0.89383 0.90447 0.93362 0.89234 0.92161 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 8.29 71.98 0.60 -4.05 16 2 C 0.11 3.87 2.18 44.92 0.10 3.97 16 3 H 0.06 2.39 7.51 -2.39 -0.02 2.37 16 4 C 0.00 -0.21 3.45 29.85 0.10 -0.11 16 5 C -0.48 -27.31 9.34 25.60 0.24 -27.08 16 6 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 7 C 0.00 -0.21 5.47 84.65 0.46 0.25 16 8 N -0.96 -61.45 13.96 21.45 0.30 -61.15 16 9 Si 0.94 44.74 27.37 68.60 1.88 46.62 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.25 -10.72 6.69 99.48 0.67 -10.05 16 13 N -0.56 -19.43 3.27 -890.35 -2.91 -22.35 16 14 C 0.07 2.13 4.93 85.79 0.42 2.56 16 15 C -0.07 -2.06 6.07 71.44 0.43 -1.63 16 16 S -0.31 -9.09 21.20 -56.49 -1.20 -10.29 16 17 C -0.03 -0.79 0.82 -11.01 -0.01 -0.80 16 18 C -0.13 -2.60 5.33 31.10 0.17 -2.43 16 19 C -0.12 -1.99 7.78 31.13 0.24 -1.74 16 20 C -0.11 -2.20 7.09 31.07 0.22 -1.98 16 21 C -0.10 -2.87 4.95 30.34 0.15 -2.72 16 22 C 0.08 2.37 3.69 88.02 0.32 2.70 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.47 7.77 -2.39 -0.02 1.45 16 25 H 0.06 1.53 6.99 -2.38 -0.02 1.51 16 26 H 0.02 0.85 7.55 -2.39 -0.02 0.83 16 27 H 0.02 0.78 5.43 -2.39 -0.01 0.76 16 28 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.07 1.75 5.07 -2.39 -0.01 1.74 16 30 H 0.08 2.30 7.31 -2.39 -0.02 2.28 16 31 H 0.07 2.60 7.88 -2.39 -0.02 2.58 16 32 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.08 1.67 4.77 -2.39 -0.01 1.66 16 34 H 0.09 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.38 8.11 -2.39 -0.02 1.36 16 37 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 38 H 0.08 1.53 8.02 -2.39 -0.02 1.51 16 39 H 0.05 1.81 7.83 -2.39 -0.02 1.79 16 40 H 0.09 2.34 7.68 -2.39 -0.02 2.32 16 41 H 0.06 2.13 5.84 -2.39 -0.01 2.12 16 42 H 0.05 1.31 3.82 -2.38 -0.01 1.30 16 Total: -1.00 -65.94 314.47 2.46 -63.48 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.95 Total: 16.76 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.45 Total: -33.07 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.61 Total: -83.50 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.20 Total: -10.29 kcal Total: -65.94 2.46 -63.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411875113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.089 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds