Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48503 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47274 * 300.00147 * 3 2 1 6 6 H 1.48504 * 109.47124 * 59.99921 * 3 2 1 7 7 C 1.37869 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46738 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46996 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00019 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99930 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99971 * 179.97438 * 13 12 11 16 16 O 1.42902 * 109.47205 * 180.02562 * 15 13 12 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.54267 * 110.03373 * 292.91285 * 18 17 16 20 20 C 1.54968 * 104.16137 * 217.13581 * 19 18 17 21 21 C 1.54884 * 102.77441 * 37.88396 * 20 19 18 22 22 C 1.53874 * 110.03593 * 175.69205 * 18 17 16 23 23 H 0.97002 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47186 * 59.99831 * 9 7 2 25 25 H 1.08999 * 109.46527 * 299.99341 * 9 7 2 26 26 H 1.08998 * 109.47651 * 59.99504 * 10 9 7 27 27 H 1.09000 * 109.46588 * 299.99343 * 10 9 7 28 28 H 1.08998 * 109.48057 * 59.99547 * 11 10 9 29 29 H 1.09000 * 109.47144 * 299.99486 * 11 10 9 30 30 H 0.96995 * 119.99976 * 359.97438 * 12 11 10 31 31 H 1.09001 * 109.47017 * 60.00358 * 15 13 12 32 32 H 1.08999 * 109.47472 * 300.00035 * 15 13 12 33 33 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 34 34 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 35 35 H 1.09004 * 110.01939 * 54.29674 * 18 17 16 36 36 H 1.09001 * 110.48609 * 335.77840 * 19 18 17 37 37 H 1.08999 * 110.49311 * 98.42344 * 19 18 17 38 38 H 1.08997 * 110.72048 * 279.57487 * 20 19 18 39 39 H 1.08993 * 110.92252 * 156.29196 * 20 19 18 40 40 H 1.09009 * 110.48779 * 203.40596 * 21 20 19 41 41 H 1.09001 * 110.59973 * 80.82109 * 21 20 19 42 42 H 1.09003 * 110.03243 * 238.56963 * 22 18 17 43 43 H 1.09004 * 110.03196 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4806 -4.9870 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9835 -7.3712 0.0019 14 8 0.7911 -7.5929 0.0010 15 6 2.9628 -8.5166 0.0020 16 8 2.2484 -9.7542 0.0015 17 6 3.0884 -10.9102 0.0009 18 6 2.2212 -12.1707 -0.0002 19 6 1.4564 -12.2873 1.3344 20 6 1.4507 -13.8072 1.6367 21 6 2.8555 -14.2558 1.1632 22 6 3.1101 -13.4220 -0.1095 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6243 -2.5566 0.8904 26 1 2.8716 -3.6038 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 0.8548 -5.0450 -0.8894 29 1 0.8530 -5.0446 0.8905 30 1 3.3863 -5.9232 0.0021 31 1 3.5894 -8.4587 0.8920 32 1 3.5895 -8.4589 -0.8880 33 1 3.7176 -10.9017 -0.8891 34 1 3.7177 -10.9025 0.8909 35 1 1.5175 -12.1388 -0.8321 36 1 1.9786 -11.7440 2.1220 37 1 0.4377 -11.9156 1.2242 38 1 0.6713 -14.3111 1.0651 39 1 1.3255 -13.9914 2.7036 40 1 2.8571 -15.3203 0.9285 41 1 3.6054 -14.0324 1.9220 42 1 2.8373 -13.9978 -0.9939 43 1 4.1593 -13.1312 -0.1621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455438064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = -120.308893 kcal Electronic energy + Delta-G solvation = -19679.362418 eV Core-core repulsion = 16530.130275 eV Total energy + Delta-G solvation = -3149.232143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69739 -38.85113 -37.05518 -35.33951 -33.32655 -31.43458 -30.77510 -29.01200 -28.26505 -26.18680 -24.50131 -22.95806 -20.98933 -20.78503 -20.25027 -19.76344 -17.31214 -16.91750 -16.52837 -16.26307 -15.86792 -15.41935 -15.02779 -14.99042 -14.44565 -14.15938 -13.80058 -13.62265 -13.22284 -12.60494 -12.30179 -12.09910 -11.84127 -11.66382 -11.59017 -11.44817 -11.30643 -11.04615 -10.92936 -10.90132 -10.74636 -10.72579 -10.58062 -9.88244 -9.88182 -9.82531 -9.36160 -9.11023 -8.79579 -8.38371 -6.02660 -4.05901 2.75024 2.85533 3.29276 3.36785 3.40158 3.87214 4.29030 4.30260 4.43397 4.50275 4.76801 4.87615 4.95082 5.02690 5.05687 5.12785 5.14127 5.29462 5.33096 5.34642 5.40642 5.47855 5.57461 5.69425 5.70509 5.76977 5.79077 5.96914 6.02441 6.12895 6.15131 6.45968 6.58646 6.77306 6.90617 6.99088 7.62889 7.68761 7.75155 7.96094 8.35729 8.40033 9.01025 9.58398 11.08613 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.068056 B = 0.002173 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.330023 B =12880.758729 C =13088.582033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.044 3.956 16 O -0.360 6.360 17 C 0.067 3.933 18 C -0.092 4.092 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.118 4.118 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 -26.697 1.090 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.379 5.379 13 C 0.291 3.709 14 O -0.399 6.399 15 C -0.036 4.036 16 O -0.278 6.278 17 C -0.010 4.010 18 C -0.110 4.110 19 C -0.152 4.152 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.156 4.156 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.303 -26.753 1.085 28.033 hybrid contribution 1.261 1.161 -0.041 1.715 sum 9.565 -25.592 1.044 27.341 Atomic orbital electron populations 1.69981 1.06050 1.26590 1.50609 1.25043 0.94873 0.99343 0.95297 0.86520 0.80015 0.83741 0.77603 1.19772 1.20998 1.21002 1.21238 0.93024 0.90924 1.50840 0.92580 1.19045 0.93878 0.90858 0.97723 1.21890 0.99776 0.93279 1.00894 1.21660 0.91808 0.84859 1.02118 1.46105 1.10888 1.05548 1.75334 1.20204 0.89587 0.83779 0.77293 1.90730 1.16620 1.84525 1.47978 1.22215 0.94075 0.84946 1.02333 1.88030 1.32336 1.12091 1.95375 1.22739 0.92944 0.85297 1.00024 1.21761 0.97363 0.92290 0.99600 1.22379 1.00972 0.95610 0.96228 1.22548 0.96922 0.96195 1.00896 1.22361 0.97390 0.99315 0.97189 1.22137 0.99517 0.95405 0.98502 0.92967 0.96220 0.96228 0.92683 0.92695 0.91690 0.91684 0.76824 0.90486 0.90481 0.93287 0.93138 0.90006 0.91515 0.91098 0.91533 0.91613 0.91739 0.91664 0.91388 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.12 2.09 5.67 -4.04 -0.02 2.06 16 12 N -0.73 -10.27 5.56 -60.29 -0.33 -10.60 16 13 C 0.51 7.74 7.91 -10.99 -0.09 7.65 16 14 O -0.52 -10.59 16.50 -14.35 -0.24 -10.83 16 15 C 0.04 0.48 6.42 36.00 0.23 0.71 16 16 O -0.36 -4.59 9.71 -55.14 -0.54 -5.13 16 17 C 0.07 0.59 4.98 37.16 0.19 0.78 16 18 C -0.09 -0.78 3.19 -89.50 -0.29 -1.06 16 19 C -0.11 -1.02 6.22 -25.03 -0.16 -1.18 16 20 C -0.13 -0.91 6.91 -24.70 -0.17 -1.08 16 21 C -0.12 -0.77 6.83 -25.08 -0.17 -0.94 16 22 C -0.12 -0.76 6.46 -25.61 -0.17 -0.92 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.40 4.27 8.47 -40.82 -0.35 3.93 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.39 8.02 -51.93 -0.42 -0.03 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.61 7.77 -51.93 -0.40 0.21 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -33.59 353.56 -9.27 -42.86 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.87 Total: -2.56 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.33 Total: -9.38 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.40 Total: -36.71 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.77 Total: -15.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.59 -9.27 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455438064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.453 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds