Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48503 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47274 * 300.00147 * 3 2 1 6 6 H 1.48504 * 109.47124 * 59.99921 * 3 2 1 7 7 C 1.37869 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46738 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46996 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00019 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99930 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99971 * 179.97438 * 13 12 11 16 16 O 1.42902 * 109.47205 * 180.02562 * 15 13 12 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.54267 * 110.03373 * 292.91285 * 18 17 16 20 20 C 1.54968 * 104.16137 * 217.13581 * 19 18 17 21 21 C 1.54884 * 102.77441 * 37.88396 * 20 19 18 22 22 C 1.53874 * 110.03593 * 175.69205 * 18 17 16 23 23 H 0.97002 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47186 * 59.99831 * 9 7 2 25 25 H 1.08999 * 109.46527 * 299.99341 * 9 7 2 26 26 H 1.08998 * 109.47651 * 59.99504 * 10 9 7 27 27 H 1.09000 * 109.46588 * 299.99343 * 10 9 7 28 28 H 1.08998 * 109.48057 * 59.99547 * 11 10 9 29 29 H 1.09000 * 109.47144 * 299.99486 * 11 10 9 30 30 H 0.96995 * 119.99976 * 359.97438 * 12 11 10 31 31 H 1.09001 * 109.47017 * 60.00358 * 15 13 12 32 32 H 1.08999 * 109.47472 * 300.00035 * 15 13 12 33 33 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 34 34 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 35 35 H 1.09004 * 110.01939 * 54.29674 * 18 17 16 36 36 H 1.09001 * 110.48609 * 335.77840 * 19 18 17 37 37 H 1.08999 * 110.49311 * 98.42344 * 19 18 17 38 38 H 1.08997 * 110.72048 * 279.57487 * 20 19 18 39 39 H 1.08993 * 110.92252 * 156.29196 * 20 19 18 40 40 H 1.09009 * 110.48779 * 203.40596 * 21 20 19 41 41 H 1.09001 * 110.59973 * 80.82109 * 21 20 19 42 42 H 1.09003 * 110.03243 * 238.56963 * 22 18 17 43 43 H 1.09004 * 110.03196 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4806 -4.9870 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9835 -7.3712 0.0019 14 8 0.7911 -7.5929 0.0010 15 6 2.9628 -8.5166 0.0020 16 8 2.2484 -9.7542 0.0015 17 6 3.0884 -10.9102 0.0009 18 6 2.2212 -12.1707 -0.0002 19 6 1.4564 -12.2873 1.3344 20 6 1.4507 -13.8072 1.6367 21 6 2.8555 -14.2558 1.1632 22 6 3.1101 -13.4220 -0.1095 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6243 -2.5566 0.8904 26 1 2.8716 -3.6038 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 0.8548 -5.0450 -0.8894 29 1 0.8530 -5.0446 0.8905 30 1 3.3863 -5.9232 0.0021 31 1 3.5894 -8.4587 0.8920 32 1 3.5895 -8.4589 -0.8880 33 1 3.7176 -10.9017 -0.8891 34 1 3.7177 -10.9025 0.8909 35 1 1.5175 -12.1388 -0.8321 36 1 1.9786 -11.7440 2.1220 37 1 0.4377 -11.9156 1.2242 38 1 0.6713 -14.3111 1.0651 39 1 1.3255 -13.9914 2.7036 40 1 2.8571 -15.3203 0.9285 41 1 3.6054 -14.0324 1.9220 42 1 2.8373 -13.9978 -0.9939 43 1 4.1593 -13.1312 -0.1621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455438064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = -141.472219 kcal Electronic energy + Delta-G solvation = -19680.280129 eV Core-core repulsion = 16530.130275 eV Total energy + Delta-G solvation = -3150.149854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84120 -39.61174 -37.87318 -36.89105 -35.20503 -33.14865 -31.53397 -29.69826 -29.42699 -27.74142 -25.26143 -24.67058 -22.33429 -21.57721 -21.49882 -20.53682 -18.59587 -18.25202 -17.72165 -17.39246 -16.86342 -16.50962 -16.39170 -16.00413 -15.93785 -15.29075 -14.96298 -14.32921 -14.20424 -14.14724 -13.76451 -13.62404 -13.30850 -12.81544 -12.74555 -12.55374 -12.35132 -12.15126 -11.97078 -11.90372 -11.69755 -11.67984 -11.59077 -11.48212 -11.31785 -11.22637 -10.80914 -10.62691 -10.56668 -10.13158 -8.19869 -6.31574 1.41858 1.42037 1.55325 1.56958 1.83925 2.41806 2.99816 3.13924 3.70141 3.71955 3.77346 3.91661 4.16747 4.18571 4.21554 4.28648 4.38156 4.42880 4.51737 4.54234 4.57616 4.69333 4.76606 4.85276 4.92293 4.93453 4.97960 5.07539 5.09902 5.16748 5.25493 5.35565 5.40530 5.47571 5.48575 5.52310 5.70052 5.83908 6.12461 6.21716 6.59000 6.86491 7.24431 7.38236 8.92470 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.068056 B = 0.002173 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.330023 B =12880.758729 C =13088.582033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.130 3.870 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.583 6.583 15 C 0.051 3.949 16 O -0.398 6.398 17 C 0.064 3.936 18 C -0.095 4.095 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.113 4.113 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.419 0.581 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.962 -27.434 1.084 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.289 3.711 14 O -0.462 6.462 15 C -0.028 4.028 16 O -0.317 6.317 17 C -0.012 4.012 18 C -0.114 4.114 19 C -0.156 4.156 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.150 4.150 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.257 0.743 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.786 -27.505 1.078 29.943 hybrid contribution 0.147 1.359 -0.035 1.368 sum 11.932 -26.146 1.043 28.759 Atomic orbital electron populations 1.70130 1.07992 1.27727 1.51802 1.26063 0.95774 1.03691 0.94839 0.85337 0.79237 0.78516 0.77566 1.18032 1.20639 1.20651 1.21718 0.93823 0.91914 1.50246 0.91327 1.18972 0.94534 0.93141 0.95029 1.21592 0.98384 0.91466 1.02374 1.21230 0.92023 0.85605 1.00544 1.45833 1.11400 1.04544 1.74659 1.21137 0.89665 0.84804 0.75505 1.90708 1.19476 1.85367 1.50674 1.22285 0.92532 0.82483 1.05480 1.87994 1.34513 1.13474 1.95765 1.22931 0.92778 0.83838 1.01649 1.21804 0.97563 0.93597 0.98415 1.22375 0.99614 0.96914 0.96695 1.22549 0.97918 0.94751 1.01268 1.22368 0.96519 0.99921 0.97156 1.22121 0.99779 0.94282 0.98859 0.92842 0.99037 0.99053 0.91073 0.91076 0.93444 0.93450 0.74322 0.87119 0.87052 0.91398 0.91508 0.91756 0.91883 0.93571 0.91643 0.91165 0.90607 0.91028 0.90892 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.29 21.45 0.28 -57.20 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.09 4.97 29.85 0.15 1.24 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.63 5.67 86.38 0.49 5.12 16 12 N -0.71 -19.01 5.56 -463.06 -2.57 -21.58 16 13 C 0.50 14.87 7.91 87.66 0.69 15.56 16 14 O -0.58 -24.24 16.50 16.01 0.26 -23.98 16 15 C 0.05 0.97 6.42 71.24 0.46 1.43 16 16 O -0.40 -9.67 9.71 -129.94 -1.26 -10.94 16 17 C 0.06 0.99 4.98 71.98 0.36 1.35 16 18 C -0.10 -1.54 3.19 -10.07 -0.03 -1.57 16 19 C -0.12 -2.13 6.22 31.70 0.20 -1.93 16 20 C -0.13 -1.71 6.91 31.91 0.22 -1.49 16 21 C -0.12 -1.25 6.83 31.67 0.22 -1.03 16 22 C -0.11 -1.21 6.46 31.32 0.20 -1.00 16 23 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.42 7.68 8.47 -92.71 -0.79 6.89 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.82 8.02 -2.39 -0.02 0.80 16 35 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 1.15 7.77 -2.39 -0.02 1.13 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.64 7.67 -2.38 -0.02 0.62 16 Total: -1.00 -75.59 353.56 2.72 -72.87 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.18 Total: 10.69 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.81 Total: -15.62 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.29 Total: -78.78 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.00 Total: -34.91 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.59 2.72 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455438064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.604 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds