Wall clock time and date at job start Mon Mar 30 2020 01:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48499 * 109.47221 * 269.99880 * 3 2 1 5 5 H 1.48493 * 109.47314 * 30.00125 * 3 2 1 6 6 H 1.48498 * 109.46613 * 150.00158 * 3 2 1 7 7 C 1.37878 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00145 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00304 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00279 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47138 * 179.97438 * 14 13 11 16 16 O 1.42902 * 109.47230 * 64.99586 * 15 14 13 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.54267 * 110.03373 * 292.91285 * 18 17 16 20 20 C 1.54968 * 104.16137 * 217.13581 * 19 18 17 21 21 C 1.54884 * 102.77441 * 37.88396 * 20 19 18 22 22 C 1.53874 * 110.03593 * 175.69205 * 18 17 16 23 23 H 0.96990 * 119.99904 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46990 * 60.00246 * 9 7 2 25 25 H 1.08995 * 109.46985 * 299.99873 * 9 7 2 26 26 H 1.08999 * 109.47305 * 59.99895 * 10 9 7 27 27 H 1.09004 * 109.47201 * 299.99735 * 10 9 7 28 28 H 0.97001 * 119.99416 * 359.97438 * 13 11 10 29 29 H 1.08999 * 109.47387 * 59.99333 * 14 13 11 30 30 H 1.09004 * 109.46579 * 299.99504 * 14 13 11 31 31 H 1.09001 * 109.47081 * 304.99795 * 15 14 13 32 32 H 1.08999 * 109.47384 * 184.99488 * 15 14 13 33 33 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 34 34 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 35 35 H 1.09004 * 110.01939 * 54.29674 * 18 17 16 36 36 H 1.09001 * 110.48609 * 335.77840 * 19 18 17 37 37 H 1.08999 * 110.49311 * 98.42344 * 19 18 17 38 38 H 1.08997 * 110.72048 * 279.57487 * 20 19 18 39 39 H 1.08993 * 110.92252 * 156.29196 * 20 19 18 40 40 H 1.09009 * 110.48779 * 203.40596 * 21 20 19 41 41 H 1.09001 * 110.59973 * 80.82109 * 21 20 19 42 42 H 1.09003 * 110.03243 * 238.56963 * 22 18 17 43 43 H 1.09004 * 110.03196 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4918 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0003 13 7 2.1656 -6.1345 -0.0016 14 6 1.4332 -7.4032 -0.0016 15 6 2.4274 -8.5660 -0.0027 16 8 3.1707 -8.5585 1.2178 17 6 4.1323 -9.6107 1.3192 18 6 4.8641 -9.5054 2.6586 19 6 5.7293 -8.2285 2.6892 20 6 7.0052 -8.6533 3.4593 21 6 7.2440 -10.0984 2.9555 22 6 5.8266 -10.6939 2.8283 23 1 -0.4849 0.8400 -0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6248 -2.5572 0.8897 26 1 2.8726 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 3.1356 -6.1344 -0.0027 29 1 0.8061 -7.4608 -0.8912 30 1 0.8069 -7.4610 0.8887 31 1 3.1109 -8.4589 -0.8450 32 1 1.8853 -9.5075 -0.0922 33 1 3.6252 -10.5736 1.2573 34 1 4.8512 -9.5256 0.5043 35 1 4.1442 -9.4881 3.4769 36 1 5.9820 -7.9146 1.6764 37 1 5.2113 -7.4292 3.2192 38 1 6.8278 -8.6435 4.5347 39 1 7.8471 -8.0106 3.2023 40 1 7.8313 -10.6628 3.6800 41 1 7.7423 -10.0891 1.9862 42 1 5.5743 -11.2530 3.7294 43 1 5.7720 -11.3460 1.9566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457167800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:09 Heat of formation + Delta-G solvation = -120.795664 kcal Electronic energy + Delta-G solvation = -20148.988057 eV Core-core repulsion = 16999.734806 eV Total energy + Delta-G solvation = -3149.253251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.34947 -38.86201 -37.38354 -34.39183 -33.38400 -31.22691 -30.65589 -29.08353 -28.76223 -25.61189 -24.58676 -22.81879 -21.31420 -20.96732 -19.93858 -19.57069 -17.19714 -16.86094 -16.38377 -15.99996 -15.66132 -15.32766 -15.12467 -14.83964 -14.38146 -13.91059 -13.65129 -13.47033 -13.00062 -12.90251 -12.20411 -12.12398 -11.94078 -11.64643 -11.47192 -11.31870 -11.28459 -11.09812 -10.99507 -10.89379 -10.86892 -10.71634 -10.55903 -9.89510 -9.85781 -9.60742 -9.11809 -8.94223 -8.68623 -8.27629 -5.91937 -3.96067 3.30865 3.36112 3.39049 3.41898 3.44805 3.67251 4.29297 4.31602 4.46029 4.51238 4.79520 4.88715 5.00794 5.05072 5.12584 5.15338 5.16839 5.30644 5.35399 5.41238 5.42851 5.48653 5.58662 5.60358 5.69817 5.71754 5.81966 5.97283 5.98255 6.03311 6.14151 6.30390 6.32760 6.79357 6.96855 6.97503 7.79293 7.92423 7.99670 8.12492 8.43923 8.87553 9.12943 9.67139 11.19131 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.003066 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.616567 B = 9129.758943 C =10258.602930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.052 3.948 16 O -0.381 6.381 17 C 0.069 3.931 18 C -0.092 4.092 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.118 4.118 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.399 0.601 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.732 -23.978 3.352 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.297 3.703 12 O -0.414 6.414 13 N -0.393 5.393 14 C -0.002 4.002 15 C -0.025 4.025 16 O -0.300 6.300 17 C -0.008 4.008 18 C -0.111 4.111 19 C -0.152 4.152 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.156 4.156 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.233 0.767 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.635 -23.728 3.501 27.109 hybrid contribution 0.913 0.587 -0.248 1.114 sum 13.548 -23.140 3.253 27.011 Atomic orbital electron populations 1.70002 1.06052 1.26526 1.50337 1.25033 0.94827 0.99215 0.95376 0.86589 0.79784 0.83539 0.78024 1.20710 1.21245 1.19880 1.21240 0.92931 0.91053 1.51191 0.92617 1.18896 0.93202 0.89390 0.98595 1.21847 1.00678 0.91997 1.02423 1.21546 0.88616 0.85703 0.74389 1.90662 1.14512 1.87711 1.48517 1.46111 1.10140 1.05295 1.77793 1.21252 0.93842 0.82293 1.02796 1.22772 0.94214 0.98407 0.87114 1.87972 1.52535 1.51216 1.38284 1.22657 0.90710 0.89982 0.97432 1.21773 0.96942 0.95583 0.96779 1.22380 0.95082 0.96929 1.00790 1.22544 0.97979 0.96015 1.00038 1.22360 0.96433 0.96336 1.01127 1.22136 0.94593 0.97017 1.01839 0.92987 0.95866 0.95816 0.90265 0.90358 0.76713 0.90418 0.91039 0.92717 0.92054 0.93596 0.93315 0.90184 0.91439 0.91097 0.91551 0.91529 0.91780 0.91678 0.91491 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.92 13.29 55.43 0.74 -27.18 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.73 5.64 -27.89 -0.16 -2.89 16 11 C 0.51 10.25 7.83 -10.99 -0.09 10.17 16 12 O -0.54 -13.18 15.98 5.56 0.09 -13.09 16 13 N -0.74 -11.06 5.50 -60.30 -0.33 -11.39 16 14 C 0.12 1.57 6.06 -4.05 -0.02 1.55 16 15 C 0.05 0.49 6.07 37.16 0.23 0.71 16 16 O -0.38 -4.09 10.12 -35.23 -0.36 -4.45 16 17 C 0.07 0.56 4.98 37.16 0.19 0.75 16 18 C -0.09 -0.74 3.19 -89.50 -0.29 -1.03 16 19 C -0.11 -0.98 6.22 -25.03 -0.16 -1.13 16 20 C -0.13 -0.93 6.91 -24.70 -0.17 -1.10 16 21 C -0.12 -0.79 6.83 -25.08 -0.17 -0.96 16 22 C -0.12 -0.76 6.46 -25.61 -0.17 -0.92 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.40 4.98 8.47 -40.82 -0.35 4.64 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.36 8.02 -51.93 -0.42 -0.05 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.59 7.77 -51.93 -0.40 0.18 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.36 7.67 -51.93 -0.40 -0.03 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -34.49 352.94 -8.77 -43.25 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.87 Total: -1.51 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.34 Total: -7.91 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.40 Total: -38.57 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.27 Total: -17.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.49 -8.77 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457167800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.542 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds