Wall clock time and date at job start Mon Mar 30 2020 01:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47282 * 270.00064 * 3 2 1 5 5 H 1.48497 * 109.47022 * 30.00270 * 3 2 1 6 6 H 1.48498 * 109.47416 * 149.99943 * 3 2 1 7 7 C 1.37882 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99479 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47685 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99519 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99747 * 174.82548 * 13 11 10 15 15 C 1.52997 * 109.47122 * 303.31894 * 14 13 11 16 16 C 1.53002 * 109.47360 * 305.32995 * 15 14 13 17 17 O 1.42897 * 109.47232 * 174.88433 * 16 15 14 18 18 C 1.53006 * 109.46691 * 183.32326 * 14 13 11 19 19 C 1.52992 * 109.47300 * 299.99656 * 18 14 13 20 20 C 1.52994 * 109.47508 * 300.00288 * 19 18 14 21 21 C 1.53006 * 109.47075 * 59.99574 * 20 19 18 22 22 C 1.52992 * 109.47300 * 300.00553 * 21 20 19 23 23 H 0.97001 * 119.99715 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47711 * 59.99958 * 9 7 2 25 25 H 1.09004 * 109.47347 * 299.99650 * 9 7 2 26 26 H 1.09002 * 109.47516 * 59.99530 * 10 9 7 27 27 H 1.08998 * 109.47098 * 300.00092 * 10 9 7 28 28 H 0.96995 * 120.00368 * 354.54452 * 13 11 10 29 29 H 1.09000 * 109.47258 * 65.32556 * 15 14 13 30 30 H 1.09005 * 109.47280 * 185.32839 * 15 14 13 31 31 H 1.09004 * 109.46756 * 294.87709 * 16 15 14 32 32 H 1.09001 * 109.47349 * 54.88010 * 16 15 14 33 33 H 0.96697 * 114.00662 * 180.02562 * 17 16 15 34 34 H 1.09005 * 109.47477 * 59.99976 * 18 14 13 35 35 H 1.09006 * 109.46733 * 179.97438 * 18 14 13 36 36 H 1.09000 * 109.47325 * 179.97438 * 19 18 14 37 37 H 1.09006 * 109.47238 * 60.00297 * 19 18 14 38 38 H 1.09001 * 109.47310 * 300.00256 * 20 19 18 39 39 H 1.08994 * 109.47994 * 179.97438 * 20 19 18 40 40 H 1.09007 * 109.47017 * 179.97438 * 21 20 19 41 41 H 1.09006 * 109.46733 * 60.00567 * 21 20 19 42 42 H 1.09006 * 109.47238 * 299.99703 * 22 21 20 43 43 H 1.09000 * 109.47325 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5286 -2.6365 -0.0014 12 8 6.1350 -1.5861 -0.0009 13 7 6.2025 -3.8037 -0.0031 14 6 7.6630 -3.8060 -0.1176 15 6 8.0758 -3.0679 -1.3926 16 6 7.3622 -3.6888 -2.5952 17 8 7.6540 -2.9264 -3.7680 18 6 8.1675 -5.2493 -0.1778 19 6 7.7547 -5.9874 1.0971 20 6 8.3627 -5.2850 2.3127 21 6 7.8583 -3.8418 2.3729 22 6 8.2710 -3.1036 1.0980 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6808 0.8905 25 1 3.8753 -0.6796 -0.8895 26 1 3.6586 -3.1494 -0.8920 27 1 3.6579 -3.1513 0.8879 28 1 5.7208 -4.6419 0.0756 29 1 7.7998 -2.0167 -1.3094 30 1 9.1543 -3.1508 -1.5274 31 1 7.7072 -4.7136 -2.7329 32 1 6.2865 -3.6881 -2.4195 33 1 7.2332 -3.2631 -4.5709 34 1 7.7343 -5.7498 -1.0439 35 1 9.2542 -5.2510 -0.2635 36 1 8.1137 -7.0157 1.0540 37 1 6.6680 -5.9857 1.1823 38 1 9.4494 -5.2867 2.2275 39 1 8.0683 -5.8106 3.2211 40 1 8.2911 -3.3415 3.2393 41 1 6.7715 -3.8400 2.4582 42 1 9.3577 -3.1054 1.0128 43 1 7.9120 -2.0753 1.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487216567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:14 Heat of formation + Delta-G solvation = -118.509021 kcal Electronic energy + Delta-G solvation = -21954.655350 eV Core-core repulsion = 18805.501255 eV Total energy + Delta-G solvation = -3149.154095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63423 -37.86648 -36.77484 -33.96166 -33.45231 -31.90047 -31.04670 -30.76939 -28.15021 -26.01283 -23.67346 -22.71919 -21.75483 -20.66275 -19.79127 -18.96552 -17.49178 -17.28768 -16.24320 -15.67912 -15.39662 -14.96926 -14.67922 -14.21749 -14.12777 -13.96583 -13.81625 -13.33476 -12.72206 -12.57658 -12.48827 -12.33639 -12.22827 -12.08930 -11.58011 -11.38974 -11.27741 -11.10405 -10.92776 -10.70546 -10.37664 -10.26630 -10.10477 -10.01688 -9.84656 -9.74757 -9.17403 -8.95928 -8.75422 -8.49203 -6.01978 -4.00499 3.16996 3.39382 3.45288 3.47028 3.57026 4.13093 4.48656 4.52323 4.60151 4.66986 4.99003 5.09481 5.12587 5.24573 5.26399 5.33841 5.34939 5.37776 5.46003 5.53771 5.56858 5.66063 5.81541 5.88840 5.94990 5.96923 6.05182 6.09116 6.11053 6.14469 6.29838 6.36470 6.40980 6.71324 6.81430 7.39122 7.45989 7.61520 7.79414 7.87665 8.51865 8.73319 9.01335 9.61425 11.10902 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.005143 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.561511 B = 5443.479251 C = 6046.109512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.123 4.123 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.733 5.733 14 C 0.187 3.813 15 C -0.132 4.132 16 C 0.080 3.920 17 O -0.574 6.574 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.129 4.129 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.396 0.604 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.376 0.624 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.166 -14.298 -0.164 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.163 4.163 11 C 0.301 3.699 12 O -0.408 6.408 13 N -0.388 5.388 14 C 0.101 3.899 15 C -0.171 4.171 16 C 0.002 3.998 17 O -0.380 6.380 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.167 4.167 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.231 0.769 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.223 0.777 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.796 -13.052 0.257 22.885 hybrid contribution -0.262 0.034 -0.384 0.466 sum 18.535 -13.018 -0.127 22.650 Atomic orbital electron populations 1.69916 1.06306 1.26944 1.51171 1.24969 0.94688 0.99213 0.94327 0.86800 0.80617 0.83400 0.78762 1.20248 1.21488 1.18520 1.21121 0.89363 0.94494 1.51259 0.91029 1.19342 0.96297 0.90236 0.97610 1.21669 0.88416 1.03187 1.03055 1.21421 0.91311 0.82947 0.74251 1.90598 1.70437 1.31564 1.48178 1.46331 1.06294 1.09190 1.76987 1.20139 0.80809 0.94717 0.94284 1.21905 1.00107 1.03195 0.91853 1.22171 0.99119 0.93142 0.85353 1.86482 1.75697 1.57223 1.18549 1.21887 1.01730 0.94218 0.98253 1.21536 1.00991 0.98687 0.94512 1.21542 1.00209 0.96132 0.97712 1.21472 1.01573 0.94922 0.97429 1.21930 0.99864 1.01514 0.93416 0.92746 0.95869 0.96319 0.89916 0.89867 0.76922 0.88581 0.91181 0.94270 0.93319 0.77726 0.91326 0.90565 0.91893 0.91770 0.92207 0.92193 0.92235 0.91649 0.91827 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.81 27.47 -169.99 -4.67 18.15 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 0.08 3.33 -27.89 -0.09 -0.02 16 10 C -0.12 -2.36 5.64 -27.89 -0.16 -2.51 16 11 C 0.51 8.89 6.83 -10.99 -0.08 8.81 16 12 O -0.53 -11.15 12.28 5.55 0.07 -11.08 16 13 N -0.73 -9.19 3.12 -47.61 -0.15 -9.34 16 14 C 0.19 2.13 0.35 -131.82 -0.05 2.08 16 15 C -0.13 -1.75 4.27 -26.73 -0.11 -1.86 16 16 C 0.08 0.98 6.54 37.16 0.24 1.22 16 17 O -0.57 -7.63 13.66 -35.23 -0.48 -8.11 16 18 C -0.12 -1.03 4.56 -26.73 -0.12 -1.15 16 19 C -0.12 -0.93 5.75 -26.74 -0.15 -1.08 16 20 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 21 C -0.12 -1.26 5.77 -26.73 -0.15 -1.42 16 22 C -0.13 -1.57 4.57 -26.74 -0.12 -1.69 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 24 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 25 H 0.02 0.48 7.52 -51.93 -0.39 0.09 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.40 4.00 7.21 -40.82 -0.29 3.71 16 29 H 0.10 1.65 6.28 -51.93 -0.33 1.32 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.38 6.83 -51.93 -0.35 0.03 16 32 H 0.05 0.64 6.96 -51.93 -0.36 0.28 16 33 H 0.38 3.23 9.12 45.56 0.42 3.65 16 34 H 0.07 0.52 6.69 -51.93 -0.35 0.18 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.50 6.79 -51.93 -0.35 0.15 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.80 7.60 -51.93 -0.39 0.41 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.38 6.24 -51.93 -0.32 1.05 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -34.28 327.89 -7.39 -41.67 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.49 Total: 3.38 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.38 Total: -12.20 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.62 Total: -36.74 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.41 Total: -19.20 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.28 -7.39 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487216567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.839 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds