Wall clock time and date at job start Mon Mar 30 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47282 * 270.00064 * 3 2 1 5 5 H 1.48497 * 109.47022 * 30.00270 * 3 2 1 6 6 H 1.48498 * 109.47416 * 149.99943 * 3 2 1 7 7 C 1.37882 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99479 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47685 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99519 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99747 * 174.82548 * 13 11 10 15 15 C 1.52997 * 109.47122 * 303.31894 * 14 13 11 16 16 C 1.53002 * 109.47360 * 305.32995 * 15 14 13 17 17 O 1.42897 * 109.47232 * 174.88433 * 16 15 14 18 18 C 1.53006 * 109.46691 * 183.32326 * 14 13 11 19 19 C 1.52992 * 109.47300 * 299.99656 * 18 14 13 20 20 C 1.52994 * 109.47508 * 300.00288 * 19 18 14 21 21 C 1.53006 * 109.47075 * 59.99574 * 20 19 18 22 22 C 1.52992 * 109.47300 * 300.00553 * 21 20 19 23 23 H 0.97001 * 119.99715 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47711 * 59.99958 * 9 7 2 25 25 H 1.09004 * 109.47347 * 299.99650 * 9 7 2 26 26 H 1.09002 * 109.47516 * 59.99530 * 10 9 7 27 27 H 1.08998 * 109.47098 * 300.00092 * 10 9 7 28 28 H 0.96995 * 120.00368 * 354.54452 * 13 11 10 29 29 H 1.09000 * 109.47258 * 65.32556 * 15 14 13 30 30 H 1.09005 * 109.47280 * 185.32839 * 15 14 13 31 31 H 1.09004 * 109.46756 * 294.87709 * 16 15 14 32 32 H 1.09001 * 109.47349 * 54.88010 * 16 15 14 33 33 H 0.96697 * 114.00662 * 180.02562 * 17 16 15 34 34 H 1.09005 * 109.47477 * 59.99976 * 18 14 13 35 35 H 1.09006 * 109.46733 * 179.97438 * 18 14 13 36 36 H 1.09000 * 109.47325 * 179.97438 * 19 18 14 37 37 H 1.09006 * 109.47238 * 60.00297 * 19 18 14 38 38 H 1.09001 * 109.47310 * 300.00256 * 20 19 18 39 39 H 1.08994 * 109.47994 * 179.97438 * 20 19 18 40 40 H 1.09007 * 109.47017 * 179.97438 * 21 20 19 41 41 H 1.09006 * 109.46733 * 60.00567 * 21 20 19 42 42 H 1.09006 * 109.47238 * 299.99703 * 22 21 20 43 43 H 1.09000 * 109.47325 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5286 -2.6365 -0.0014 12 8 6.1350 -1.5861 -0.0009 13 7 6.2025 -3.8037 -0.0031 14 6 7.6630 -3.8060 -0.1176 15 6 8.0758 -3.0679 -1.3926 16 6 7.3622 -3.6888 -2.5952 17 8 7.6540 -2.9264 -3.7680 18 6 8.1675 -5.2493 -0.1778 19 6 7.7547 -5.9874 1.0971 20 6 8.3627 -5.2850 2.3127 21 6 7.8583 -3.8418 2.3729 22 6 8.2710 -3.1036 1.0980 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6808 0.8905 25 1 3.8753 -0.6796 -0.8895 26 1 3.6586 -3.1494 -0.8920 27 1 3.6579 -3.1513 0.8879 28 1 5.7208 -4.6419 0.0756 29 1 7.7998 -2.0167 -1.3094 30 1 9.1543 -3.1508 -1.5274 31 1 7.7072 -4.7136 -2.7329 32 1 6.2865 -3.6881 -2.4195 33 1 7.2332 -3.2631 -4.5709 34 1 7.7343 -5.7498 -1.0439 35 1 9.2542 -5.2510 -0.2635 36 1 8.1137 -7.0157 1.0540 37 1 6.6680 -5.9857 1.1823 38 1 9.4494 -5.2867 2.2275 39 1 8.0683 -5.8106 3.2211 40 1 8.2911 -3.3415 3.2393 41 1 6.7715 -3.8400 2.4582 42 1 9.3577 -3.1054 1.0128 43 1 7.9120 -2.0753 1.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487216567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:13 Heat of formation + Delta-G solvation = -143.503920 kcal Electronic energy + Delta-G solvation = -21955.739210 eV Core-core repulsion = 18805.501255 eV Total energy + Delta-G solvation = -3150.237955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72823 -39.08440 -37.71955 -35.56277 -34.92520 -33.52372 -32.43721 -31.72313 -29.10167 -27.85885 -24.54639 -23.81427 -23.20882 -21.63264 -21.21290 -20.02147 -19.22472 -18.44865 -17.74131 -16.90010 -16.49082 -16.21203 -15.98467 -15.75474 -15.22525 -15.00298 -14.91281 -14.70383 -14.45081 -14.18481 -13.45074 -13.37027 -13.21508 -13.17185 -12.99151 -12.89678 -12.55373 -12.15166 -12.03155 -11.98564 -11.92772 -11.77584 -11.45468 -11.40614 -11.24428 -11.10187 -10.79450 -10.78272 -10.32282 -9.90389 -8.33172 -6.35471 1.30800 1.32740 1.47929 1.78555 2.30949 2.33142 3.02784 3.24915 3.66733 3.81365 3.96435 4.05689 4.16865 4.26042 4.28633 4.38966 4.40544 4.48480 4.49216 4.58817 4.60720 4.67296 4.78200 4.86089 4.97485 5.01551 5.09553 5.17952 5.20865 5.27410 5.29668 5.34682 5.39653 5.44294 5.47377 5.53581 5.60392 5.74700 6.22681 6.70947 6.71923 6.87039 7.30015 7.43851 8.82591 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.005143 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.561511 B = 5443.479251 C = 6046.109512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.008 3.992 10 C -0.119 4.119 11 C 0.516 3.484 12 O -0.573 6.573 13 N -0.710 5.710 14 C 0.188 3.812 15 C -0.132 4.132 16 C 0.080 3.920 17 O -0.599 6.599 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.129 4.129 23 H 0.267 0.733 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.412 0.588 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.395 0.605 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.039 -16.536 -0.366 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.030 4.030 10 C -0.159 4.159 11 C 0.304 3.696 12 O -0.452 6.452 13 N -0.364 5.364 14 C 0.102 3.898 15 C -0.171 4.171 16 C 0.003 3.997 17 O -0.407 6.407 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.167 4.167 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.023 0.977 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.249 0.751 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.244 0.756 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.670 -15.349 0.045 25.746 hybrid contribution -0.845 0.691 -0.328 1.139 sum 19.825 -14.658 -0.282 24.657 Atomic orbital electron populations 1.70020 1.07699 1.28053 1.52587 1.25760 0.95443 1.02659 0.94301 0.85869 0.79214 0.79785 0.79070 1.19523 1.20230 1.18820 1.21439 0.91278 0.93672 1.50189 0.93123 1.19172 0.93856 0.93881 0.96055 1.21499 0.90123 0.99631 1.04605 1.21003 0.90526 0.83700 0.74324 1.90609 1.70873 1.33340 1.50344 1.46059 1.07140 1.08296 1.74872 1.20277 0.79439 0.96985 0.93105 1.21885 1.01064 1.00778 0.93359 1.22213 0.98252 0.94580 0.84671 1.86437 1.76208 1.58332 1.19755 1.21881 1.02655 0.91345 0.99417 1.21561 1.00964 0.99618 0.93454 1.21522 1.00860 0.94069 0.98691 1.21455 1.00453 0.96828 0.96549 1.21888 1.00711 0.99451 0.94658 0.92373 0.97415 0.97708 0.88391 0.88355 0.75051 0.93210 0.89914 0.90734 0.94622 0.75580 0.89673 0.89043 0.89605 0.91898 0.91114 0.91398 0.92524 0.93431 0.90347 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.02 0.97 5.47 84.66 0.46 1.43 16 3 Si 0.94 47.74 27.47 68.60 1.88 49.63 16 4 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.26 -13.48 6.54 99.48 0.65 -12.83 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.07 16 9 C 0.01 0.42 3.33 29.84 0.10 0.52 16 10 C -0.12 -4.51 5.64 29.85 0.17 -4.34 16 11 C 0.52 17.93 6.83 87.66 0.60 18.53 16 12 O -0.57 -24.81 12.28 -3.05 -0.04 -24.85 16 13 N -0.71 -16.80 3.12 -422.92 -1.32 -18.12 16 14 C 0.19 3.95 0.35 3.60 0.00 3.95 16 15 C -0.13 -3.37 4.27 30.59 0.13 -3.23 16 16 C 0.08 1.80 6.54 71.98 0.47 2.27 16 17 O -0.60 -15.16 13.66 -148.98 -2.03 -17.19 16 18 C -0.12 -1.46 4.56 30.59 0.14 -1.32 16 19 C -0.12 -1.34 5.75 30.59 0.18 -1.16 16 20 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 21 C -0.12 -2.36 5.77 30.59 0.18 -2.19 16 22 C -0.13 -3.06 4.57 30.59 0.14 -2.92 16 23 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 24 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 25 H 0.00 0.24 7.52 -2.39 -0.02 0.22 16 26 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 27 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.41 7.26 7.21 -92.71 -0.67 6.59 16 29 H 0.05 1.76 6.28 -2.39 -0.01 1.74 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.07 1.15 6.83 -2.39 -0.02 1.14 16 32 H 0.04 0.88 6.96 -2.39 -0.02 0.86 16 33 H 0.39 6.16 9.12 -74.06 -0.68 5.48 16 34 H 0.08 0.86 6.69 -2.38 -0.02 0.84 16 35 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.74 6.79 -2.38 -0.02 0.73 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.05 1.13 7.60 -2.38 -0.02 1.11 16 42 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.05 1.49 6.24 -2.39 -0.01 1.48 16 Total: -1.00 -76.59 327.89 1.39 -75.20 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.40 Total: 14.96 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 2.99 Total: -20.40 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.02 Total: -77.35 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.07 Total: -42.04 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.63 kcal Total: -76.59 1.39 -75.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487216567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.306 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds