Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99832 * 2 1 4 4 H 1.48492 * 109.47196 * 269.99959 * 3 2 1 5 5 H 1.48502 * 109.46953 * 30.00342 * 3 2 1 6 6 H 1.48504 * 109.47012 * 149.99771 * 3 2 1 7 7 C 1.37881 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99646 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99989 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46886 * 179.97438 * 11 10 9 13 13 H 1.09008 * 110.43442 * 56.08574 * 12 11 10 14 14 C 1.54920 * 110.48616 * 293.54823 * 12 11 10 15 15 C 1.54975 * 102.79291 * 203.55893 * 14 12 11 16 16 C 1.53932 * 104.22332 * 37.59359 * 15 14 12 17 17 C 1.52785 * 109.84260 * 217.21888 * 16 15 14 18 18 C 1.53180 * 109.16908 * 294.98201 * 17 16 15 19 19 O 1.42906 * 109.37293 * 303.05959 * 18 17 16 20 20 C 1.42900 * 114.17886 * 61.49270 * 19 18 17 21 21 C 1.52794 * 109.83637 * 96.09495 * 16 15 14 22 22 C 1.53756 * 106.84792 * 336.75584 * 16 15 14 23 23 H 1.08994 * 109.95638 * 240.53464 * 22 16 15 24 24 O 1.42898 * 110.13993 * 119.04606 * 22 16 15 25 25 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47659 * 59.99383 * 9 7 2 27 27 H 1.09005 * 109.47047 * 299.99490 * 9 7 2 28 28 H 1.00901 * 111.00027 * 56.03992 * 10 9 7 29 29 H 1.09000 * 109.47007 * 60.00302 * 11 10 9 30 30 H 1.08993 * 109.47562 * 299.99941 * 11 10 9 31 31 H 1.08995 * 110.74737 * 85.23881 * 14 12 11 32 32 H 1.09000 * 110.75080 * 321.88233 * 14 12 11 33 33 H 1.09002 * 110.50419 * 156.31653 * 15 14 12 34 34 H 1.09000 * 110.50330 * 278.86962 * 15 14 12 35 35 H 1.08998 * 109.52128 * 54.89123 * 17 16 15 36 36 H 1.08998 * 109.52402 * 175.07819 * 17 16 15 37 37 H 1.08997 * 109.48801 * 183.08799 * 18 17 16 38 38 H 1.08996 * 109.49970 * 63.03788 * 18 17 16 39 39 H 1.08993 * 109.48964 * 178.52297 * 20 19 18 40 40 H 1.09005 * 109.50217 * 58.47437 * 20 19 18 41 41 H 1.09005 * 109.52207 * 184.91591 * 21 16 15 42 42 H 1.08994 * 109.52253 * 305.03613 * 21 16 15 43 43 H 0.96698 * 114.00462 * 181.43990 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 -0.0001 11 6 5.4698 -2.6181 -0.0001 12 6 5.9411 -4.0737 0.0004 13 1 5.5161 -4.6116 -0.8471 14 6 5.5566 -4.7676 1.3310 15 6 6.5823 -5.9257 1.4230 16 6 7.8855 -5.3215 0.8699 17 6 8.6405 -6.3724 0.0574 18 6 9.0836 -7.5052 0.9885 19 8 9.8804 -6.9660 2.0452 20 6 9.1955 -6.0230 2.8721 21 6 8.7575 -4.8262 2.0226 22 6 7.4829 -4.1423 -0.0309 23 1 7.8287 -4.3173 -1.0496 24 8 8.0379 -2.9259 0.4736 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8752 -0.6796 -0.8895 28 1 3.6260 -3.0951 -0.7816 29 1 5.8467 -2.1143 0.8899 30 1 5.8467 -2.1141 -0.8900 31 1 4.5392 -5.1558 1.2841 32 1 5.6714 -4.0826 2.1711 33 1 6.7153 -6.2366 2.4592 34 1 6.2622 -6.7687 0.8106 35 1 7.9867 -6.7726 -0.7175 36 1 9.5165 -5.9163 -0.4036 37 1 9.6699 -8.2309 0.4249 38 1 8.2054 -7.9951 1.4090 39 1 9.8622 -5.6822 3.6641 40 1 8.3183 -6.4959 3.3137 41 1 9.6374 -4.3217 1.6231 42 1 8.1870 -4.1307 2.6381 43 1 7.8004 -2.1422 -0.0405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517146030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -111.204132 kcal Electronic energy + Delta-G solvation = -21654.682195 eV Core-core repulsion = 18505.844864 eV Total energy + Delta-G solvation = -3148.837331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73007 -38.15736 -35.43626 -35.00574 -32.81679 -31.72132 -31.33133 -28.79505 -27.33698 -25.83962 -23.82883 -23.13856 -22.49476 -21.13699 -19.79090 -18.54246 -17.02120 -16.81777 -16.50923 -16.07470 -15.87539 -15.16015 -14.89870 -14.37696 -14.30312 -14.04029 -13.69428 -13.29036 -13.01491 -12.54688 -12.42761 -12.30001 -12.20581 -11.99982 -11.46121 -11.37583 -11.33229 -11.02705 -10.83711 -10.73751 -10.54268 -10.43658 -10.33375 -10.06656 -9.86542 -9.70295 -9.49098 -9.30273 -8.62603 -7.51588 -6.08570 -4.06700 3.25887 3.33867 3.36330 3.71630 4.05757 4.30745 4.39458 4.44135 4.72903 4.87857 4.89632 4.92688 5.09040 5.09719 5.23314 5.24391 5.25175 5.41819 5.45500 5.51187 5.58106 5.59727 5.63792 5.74573 5.77565 5.79687 5.93150 6.03412 6.12423 6.14264 6.25692 6.31726 6.44891 6.54682 6.74079 6.97701 7.03384 7.57984 7.64672 7.86174 8.29171 8.62137 8.99280 9.53300 11.04747 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041598 B = 0.003688 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.939650 B = 7590.532935 C = 7802.876098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.675 5.675 11 C 0.061 3.939 12 C -0.120 4.120 13 H 0.075 0.925 14 C -0.098 4.098 15 C -0.124 4.124 16 C -0.054 4.054 17 C -0.144 4.144 18 C 0.062 3.938 19 O -0.386 6.386 20 C 0.055 3.945 21 C -0.125 4.125 22 C 0.116 3.884 23 H 0.053 0.947 24 O -0.559 6.559 25 H 0.264 0.736 26 H 0.026 0.974 27 H -0.022 1.022 28 H 0.333 0.667 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.086 -12.790 1.022 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.305 5.305 11 C -0.069 4.069 12 C -0.139 4.139 13 H 0.093 0.907 14 C -0.135 4.135 15 C -0.161 4.161 16 C -0.054 4.054 17 C -0.182 4.182 18 C -0.014 4.014 19 O -0.305 6.305 20 C -0.021 4.021 21 C -0.163 4.163 22 C 0.056 3.944 23 H 0.071 0.929 24 O -0.366 6.366 25 H 0.074 0.926 26 H 0.044 0.956 27 H -0.005 1.005 28 H 0.150 0.850 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 19.314 -13.182 2.189 23.485 hybrid contribution -0.085 1.756 -1.557 2.348 sum 19.229 -11.426 0.632 22.376 Atomic orbital electron populations 1.69902 1.06169 1.26909 1.50937 1.24919 0.94763 0.98986 0.94718 0.86807 0.80343 0.83832 0.78407 1.20384 1.21116 1.19171 1.21061 0.88962 0.94796 1.50647 0.90327 1.20002 0.96651 0.85026 0.94665 1.60463 1.04224 1.16610 1.49251 1.21917 0.90988 0.94349 0.99609 1.22656 0.94766 0.97232 0.99239 0.90662 1.22330 0.98438 0.95882 0.96853 1.22625 0.94239 0.98468 1.00815 1.20978 0.95580 0.93420 0.95388 1.22261 1.00597 0.96842 0.98460 1.22558 0.95463 0.94862 0.88551 1.87895 1.39490 1.59679 1.43431 1.22755 0.97009 0.89472 0.92883 1.21827 1.00202 0.97457 0.96778 1.22400 0.91815 0.84770 0.95399 0.92944 1.86480 1.75445 1.16847 1.57803 0.92627 0.95590 1.00463 0.85015 0.90790 0.96920 0.90846 0.91164 0.91401 0.91584 0.90769 0.91091 0.89136 0.93014 0.89110 0.93064 0.90759 0.90217 0.77590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.75 9.87 -34.44 -0.34 -15.09 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.16 3.96 4.51 -4.98 -0.02 3.93 16 10 N -0.68 -13.51 6.30 -115.06 -0.72 -14.23 16 11 C 0.06 0.96 3.90 -3.82 -0.01 0.95 16 12 C -0.12 -1.54 3.03 -88.89 -0.27 -1.81 16 13 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 14 C -0.10 -1.27 6.15 -24.68 -0.15 -1.42 16 15 C -0.12 -1.30 4.78 -25.20 -0.12 -1.42 16 16 C -0.05 -0.56 0.64 -153.85 -0.10 -0.66 16 17 C -0.14 -1.32 4.56 -26.75 -0.12 -1.44 16 18 C 0.06 0.56 6.64 37.25 0.25 0.80 16 19 O -0.39 -4.29 10.75 -35.23 -0.38 -4.67 16 20 C 0.06 0.55 6.62 37.24 0.25 0.79 16 21 C -0.12 -1.36 3.91 -26.75 -0.10 -1.47 16 22 C 0.12 1.32 3.80 -25.62 -0.10 1.22 16 23 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 24 O -0.56 -6.74 10.63 -35.23 -0.37 -7.12 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 27 H -0.02 -0.53 7.57 -51.93 -0.39 -0.92 16 28 H 0.33 6.48 8.72 -39.29 -0.34 6.13 16 29 H 0.07 1.22 7.41 -51.93 -0.38 0.83 16 30 H 0.01 0.19 7.79 -51.93 -0.40 -0.21 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.07 0.68 6.06 -51.93 -0.31 0.37 16 34 H 0.07 0.64 7.77 -51.93 -0.40 0.23 16 35 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.43 7.46 -51.93 -0.39 0.04 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 41 H 0.07 0.89 7.78 -51.93 -0.40 0.49 16 42 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 43 H 0.38 3.82 7.50 45.56 0.34 4.17 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -31.18 324.21 -8.18 -39.37 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.75 Total: 5.50 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.94 Total: -13.73 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.05 Total: -41.13 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.75 Total: -11.79 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.18 -8.18 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517146030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.839 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds