Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99832 * 2 1 4 4 H 1.48492 * 109.47196 * 269.99959 * 3 2 1 5 5 H 1.48502 * 109.46953 * 30.00342 * 3 2 1 6 6 H 1.48504 * 109.47012 * 149.99771 * 3 2 1 7 7 C 1.37881 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99646 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99989 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46886 * 179.97438 * 11 10 9 13 13 H 1.09008 * 110.43442 * 56.08574 * 12 11 10 14 14 C 1.54920 * 110.48616 * 293.54823 * 12 11 10 15 15 C 1.54975 * 102.79291 * 203.55893 * 14 12 11 16 16 C 1.53932 * 104.22332 * 37.59359 * 15 14 12 17 17 C 1.52785 * 109.84260 * 217.21888 * 16 15 14 18 18 C 1.53180 * 109.16908 * 294.98201 * 17 16 15 19 19 O 1.42906 * 109.37293 * 303.05959 * 18 17 16 20 20 C 1.42900 * 114.17886 * 61.49270 * 19 18 17 21 21 C 1.52794 * 109.83637 * 96.09495 * 16 15 14 22 22 C 1.53756 * 106.84792 * 336.75584 * 16 15 14 23 23 H 1.08994 * 109.95638 * 240.53464 * 22 16 15 24 24 O 1.42898 * 110.13993 * 119.04606 * 22 16 15 25 25 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47659 * 59.99383 * 9 7 2 27 27 H 1.09005 * 109.47047 * 299.99490 * 9 7 2 28 28 H 1.00901 * 111.00027 * 56.03992 * 10 9 7 29 29 H 1.09000 * 109.47007 * 60.00302 * 11 10 9 30 30 H 1.08993 * 109.47562 * 299.99941 * 11 10 9 31 31 H 1.08995 * 110.74737 * 85.23881 * 14 12 11 32 32 H 1.09000 * 110.75080 * 321.88233 * 14 12 11 33 33 H 1.09002 * 110.50419 * 156.31653 * 15 14 12 34 34 H 1.09000 * 110.50330 * 278.86962 * 15 14 12 35 35 H 1.08998 * 109.52128 * 54.89123 * 17 16 15 36 36 H 1.08998 * 109.52402 * 175.07819 * 17 16 15 37 37 H 1.08997 * 109.48801 * 183.08799 * 18 17 16 38 38 H 1.08996 * 109.49970 * 63.03788 * 18 17 16 39 39 H 1.08993 * 109.48964 * 178.52297 * 20 19 18 40 40 H 1.09005 * 109.50217 * 58.47437 * 20 19 18 41 41 H 1.09005 * 109.52207 * 184.91591 * 21 16 15 42 42 H 1.08994 * 109.52253 * 305.03613 * 21 16 15 43 43 H 0.96698 * 114.00462 * 181.43990 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 -0.0001 11 6 5.4698 -2.6181 -0.0001 12 6 5.9411 -4.0737 0.0004 13 1 5.5161 -4.6116 -0.8471 14 6 5.5566 -4.7676 1.3310 15 6 6.5823 -5.9257 1.4230 16 6 7.8855 -5.3215 0.8699 17 6 8.6405 -6.3724 0.0574 18 6 9.0836 -7.5052 0.9885 19 8 9.8804 -6.9660 2.0452 20 6 9.1955 -6.0230 2.8721 21 6 8.7575 -4.8262 2.0226 22 6 7.4829 -4.1423 -0.0309 23 1 7.8287 -4.3173 -1.0496 24 8 8.0379 -2.9259 0.4736 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8752 -0.6796 -0.8895 28 1 3.6260 -3.0951 -0.7816 29 1 5.8467 -2.1143 0.8899 30 1 5.8467 -2.1141 -0.8900 31 1 4.5392 -5.1558 1.2841 32 1 5.6714 -4.0826 2.1711 33 1 6.7153 -6.2366 2.4592 34 1 6.2622 -6.7687 0.8106 35 1 7.9867 -6.7726 -0.7175 36 1 9.5165 -5.9163 -0.4036 37 1 9.6699 -8.2309 0.4249 38 1 8.2054 -7.9951 1.4090 39 1 9.8622 -5.6822 3.6641 40 1 8.3183 -6.4959 3.3137 41 1 9.6374 -4.3217 1.6231 42 1 8.1870 -4.1307 2.6381 43 1 7.8004 -2.1422 -0.0405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517146030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -134.883550 kcal Electronic energy + Delta-G solvation = -21655.709012 eV Core-core repulsion = 18505.844864 eV Total energy + Delta-G solvation = -3149.864148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59331 -39.07349 -36.96686 -35.91643 -34.69449 -33.06773 -32.08736 -30.21983 -28.57189 -27.09807 -24.60532 -24.41326 -23.38814 -22.98380 -20.88016 -19.37255 -18.95230 -17.91537 -17.38377 -16.93326 -16.85067 -16.62534 -16.08690 -15.81759 -15.36081 -15.08439 -15.01731 -14.57441 -14.26867 -13.99470 -13.79396 -13.58872 -13.25090 -13.12053 -12.72712 -12.66304 -12.34728 -12.20637 -12.09646 -11.91339 -11.82378 -11.70046 -11.46228 -11.41541 -11.30355 -10.92980 -10.82831 -10.65990 -10.31459 -9.13034 -8.31875 -6.36497 1.33004 1.35792 1.46762 2.32505 3.00708 3.02167 3.19243 3.29184 3.56905 3.73710 3.90034 3.99754 4.14399 4.19329 4.29862 4.31067 4.39045 4.48378 4.52934 4.58583 4.66396 4.72290 4.78105 4.78786 4.81643 4.87026 4.94366 5.00372 5.06475 5.09887 5.16047 5.21439 5.32967 5.39647 5.45730 5.51613 5.52687 5.94361 6.30869 6.54764 6.65256 6.76074 6.81878 7.28765 8.84925 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041598 B = 0.003688 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.939650 B = 7590.532935 C = 7802.876098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.176 3.824 10 N -0.685 5.685 11 C 0.065 3.935 12 C -0.114 4.114 13 H 0.082 0.918 14 C -0.100 4.100 15 C -0.115 4.115 16 C -0.054 4.054 17 C -0.140 4.140 18 C 0.058 3.942 19 O -0.403 6.403 20 C 0.056 3.944 21 C -0.120 4.120 22 C 0.119 3.881 23 H 0.067 0.933 24 O -0.570 6.570 25 H 0.268 0.732 26 H 0.022 0.978 27 H -0.014 1.014 28 H 0.335 0.665 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.250 -12.956 0.465 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.047 3.953 10 N -0.315 5.315 11 C -0.064 4.064 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.137 4.137 15 C -0.152 4.152 16 C -0.054 4.054 17 C -0.177 4.177 18 C -0.019 4.019 19 O -0.323 6.323 20 C -0.020 4.020 21 C -0.157 4.157 22 C 0.060 3.940 23 H 0.085 0.915 24 O -0.378 6.378 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.004 0.996 28 H 0.152 0.848 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 21.498 -13.368 1.627 25.368 hybrid contribution -0.810 1.725 -1.373 2.348 sum 20.689 -11.643 0.254 23.741 Atomic orbital electron populations 1.70056 1.08195 1.28254 1.52309 1.25904 0.95656 1.03375 0.94138 0.85638 0.79298 0.78303 0.79196 1.18984 1.20683 1.17484 1.21356 0.91492 0.93406 1.50451 0.94486 1.19732 0.93614 0.87372 0.94588 1.60334 1.07133 1.14354 1.49683 1.21941 0.88057 0.96567 0.99866 1.22619 0.96142 0.95218 0.99318 0.89921 1.22275 0.98510 0.96609 0.96326 1.22574 0.93318 0.97781 1.01555 1.21000 0.95534 0.93550 0.95309 1.22240 1.00498 0.96390 0.98585 1.22735 0.95953 0.94993 0.88196 1.87877 1.40458 1.59825 1.44097 1.22780 0.97462 0.88986 0.92808 1.21739 0.99511 0.97578 0.96915 1.22446 0.90275 0.84923 0.96401 0.91491 1.86481 1.75496 1.17431 1.58359 0.92335 0.96008 0.99631 0.84771 0.91556 0.95395 0.92287 0.93105 0.90920 0.90133 0.89214 0.91462 0.87510 0.92236 0.88359 0.92364 0.91994 0.91577 0.76748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.40 5.47 84.65 0.46 0.86 16 3 Si 0.95 44.07 27.47 68.60 1.88 45.96 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -30.78 9.87 25.60 0.25 -30.53 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 9 C 0.18 8.34 4.51 85.56 0.39 8.73 16 10 N -0.68 -27.13 6.30 -517.94 -3.26 -30.39 16 11 C 0.06 1.95 3.90 86.30 0.34 2.29 16 12 C -0.11 -2.75 3.03 -9.68 -0.03 -2.78 16 13 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 14 C -0.10 -2.52 6.15 31.93 0.20 -2.32 16 15 C -0.12 -2.20 4.78 31.58 0.15 -2.05 16 16 C -0.05 -1.02 0.64 -51.75 -0.03 -1.05 16 17 C -0.14 -2.16 4.56 30.58 0.14 -2.02 16 18 C 0.06 0.87 6.64 72.04 0.48 1.35 16 19 O -0.40 -8.16 10.75 -148.98 -1.60 -9.76 16 20 C 0.06 1.02 6.62 72.04 0.48 1.50 16 21 C -0.12 -2.46 3.91 30.58 0.12 -2.34 16 22 C 0.12 2.46 3.80 31.31 0.12 2.57 16 23 H 0.07 1.22 7.67 -2.39 -0.02 1.21 16 24 O -0.57 -12.82 10.63 -148.98 -1.58 -14.40 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 27 H -0.01 -0.64 7.57 -2.38 -0.02 -0.66 16 28 H 0.34 12.99 8.72 -89.69 -0.78 12.21 16 29 H 0.07 2.11 7.41 -2.39 -0.02 2.09 16 30 H 0.03 0.77 7.79 -2.39 -0.02 0.75 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.47 8.02 -2.39 -0.02 1.45 16 33 H 0.07 1.33 6.06 -2.39 -0.01 1.32 16 34 H 0.08 1.33 7.77 -2.39 -0.02 1.31 16 35 H 0.09 1.13 8.06 -2.39 -0.02 1.11 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 0.81 7.46 -2.39 -0.02 0.79 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 0.97 6.43 -2.38 -0.02 0.96 16 41 H 0.06 1.42 7.78 -2.38 -0.02 1.40 16 42 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 43 H 0.38 7.09 7.50 -74.06 -0.56 6.53 16 Total: -1.00 -67.54 324.21 -1.60 -69.14 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.40 Total: 24.44 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.06 Total: -25.81 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.96 Total: -89.57 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -3.19 Total: -24.16 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -67.54 -1.60 -69.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517146030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.740 kcal (2) G-P(sol) polarization free energy of solvation -67.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds