Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47163 * 269.99944 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.46705 * 150.00168 * 3 2 1 7 7 C 1.37876 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99683 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.01797 * 53.59720 * 12 11 10 14 14 C 1.54306 * 110.03561 * 292.15027 * 12 11 10 15 15 C 1.54996 * 104.26680 * 217.21755 * 14 12 11 16 16 C 1.54307 * 102.70525 * 37.33092 * 15 14 12 17 17 C 1.52486 * 110.11510 * 81.62175 * 16 15 14 18 18 C 1.53220 * 109.21454 * 66.51491 * 17 16 15 19 19 O 1.42916 * 109.32701 * 56.53278 * 18 17 16 20 20 C 1.42920 * 114.23095 * 298.33105 * 19 18 17 21 21 C 1.52490 * 110.11240 * 203.81382 * 16 15 14 22 22 C 1.53667 * 104.87705 * 322.72361 * 16 15 14 23 23 H 1.08997 * 110.05757 * 142.24836 * 22 16 15 24 24 O 1.42898 * 110.05859 * 263.75807 * 22 16 15 25 25 H 0.97001 * 119.99403 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 27 27 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 28 28 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 29 29 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 30 30 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 31 31 H 1.08999 * 110.47966 * 335.91280 * 14 12 11 32 32 H 1.09001 * 110.47621 * 98.52165 * 14 12 11 33 33 H 1.09000 * 110.76455 * 279.02777 * 15 14 12 34 34 H 1.08996 * 110.92297 * 155.70975 * 15 14 12 35 35 H 1.09000 * 109.51404 * 186.43275 * 17 16 15 36 36 H 1.09002 * 109.51732 * 306.59373 * 17 16 15 37 37 H 1.09000 * 109.49456 * 296.58168 * 18 17 16 38 38 H 1.08992 * 109.52080 * 176.50116 * 18 17 16 39 39 H 1.09000 * 109.49826 * 301.72109 * 20 19 18 40 40 H 1.09003 * 109.52049 * 181.64781 * 20 19 18 41 41 H 1.08996 * 109.51338 * 53.41461 * 21 16 15 42 42 H 1.08996 * 109.51296 * 173.52370 * 21 16 15 43 43 H 0.96704 * 113.99429 * 178.47251 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5793 -0.0022 11 6 5.4695 -2.6185 -0.0022 12 6 5.9408 -4.0742 -0.0028 13 1 5.4775 -4.6161 -0.8273 14 6 5.5836 -4.7460 1.3397 15 6 6.7889 -5.6747 1.6347 16 6 7.9883 -4.8440 1.1323 17 6 8.4007 -3.8257 2.1898 18 6 8.9517 -4.5647 3.4137 19 8 10.0360 -5.4040 3.0109 20 6 9.6744 -6.4197 2.0727 21 6 9.1558 -5.7630 0.7892 22 6 7.4746 -4.1321 -0.1289 23 1 7.8839 -3.1233 -0.1817 24 8 7.8430 -4.8728 -1.2941 25 1 -0.4849 0.8401 -0.0004 26 1 3.8752 -0.6807 0.8888 27 1 3.8744 -0.6803 -0.8911 28 1 3.6252 -3.0951 -0.7837 29 1 5.8464 -2.1152 0.8882 30 1 5.8464 -2.1140 -0.8918 31 1 5.4782 -3.9972 2.1247 32 1 4.6678 -5.3292 1.2425 33 1 6.7039 -6.6072 1.0767 34 1 6.8759 -5.8720 2.7031 35 1 9.1707 -3.1701 1.7833 36 1 7.5339 -3.2330 2.4822 37 1 8.1639 -5.1751 3.8552 38 1 9.3054 -3.8407 4.1476 39 1 8.8939 -7.0489 2.5005 40 1 10.5477 -7.0299 1.8419 41 1 8.8205 -6.5340 0.0955 42 1 9.9541 -5.1811 0.3288 43 1 7.5268 -4.4861 -2.1222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517146031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -113.719548 kcal Electronic energy + Delta-G solvation = -21667.865427 eV Core-core repulsion = 18518.919019 eV Total energy + Delta-G solvation = -3148.946408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74986 -38.06722 -35.70293 -34.93358 -32.83028 -31.73209 -31.21288 -29.01760 -27.24075 -25.87692 -23.79601 -22.96615 -22.53266 -21.13076 -19.96805 -18.57373 -17.28559 -16.79225 -16.55579 -16.09690 -15.35016 -15.05414 -14.82033 -14.44249 -14.31143 -14.08911 -13.81447 -13.48854 -13.02744 -12.52687 -12.43749 -12.38461 -12.18024 -11.99180 -11.62886 -11.45001 -11.22030 -11.02263 -10.88164 -10.73975 -10.49608 -10.42502 -10.24491 -10.09751 -9.92807 -9.75197 -9.50005 -9.31153 -8.63820 -7.53627 -6.09681 -4.07875 3.24709 3.32650 3.34756 3.72855 4.02800 4.31364 4.38183 4.48735 4.67769 4.86686 4.92528 4.99651 5.07673 5.12511 5.18667 5.22844 5.27068 5.42159 5.46786 5.52237 5.60342 5.62680 5.68988 5.75373 5.76990 5.82698 5.97361 6.00518 6.11084 6.13006 6.22661 6.25715 6.43563 6.54518 6.72104 6.95890 7.05049 7.55907 7.58846 7.84351 8.27241 8.60731 8.98211 9.52137 11.03634 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032059 B = 0.003873 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.168730 B = 7227.826902 C = 7429.003936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.677 5.677 11 C 0.063 3.937 12 C -0.119 4.119 13 H 0.078 0.922 14 C -0.100 4.100 15 C -0.121 4.121 16 C -0.053 4.053 17 C -0.143 4.143 18 C 0.062 3.938 19 O -0.387 6.387 20 C 0.058 3.942 21 C -0.128 4.128 22 C 0.114 3.886 23 H 0.057 0.943 24 O -0.563 6.563 25 H 0.264 0.736 26 H 0.026 0.974 27 H -0.022 1.022 28 H 0.334 0.666 29 H 0.065 0.935 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.357 -10.990 2.349 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.307 5.307 11 C -0.067 4.067 12 C -0.138 4.138 13 H 0.096 0.904 14 C -0.138 4.138 15 C -0.158 4.158 16 C -0.053 4.053 17 C -0.181 4.181 18 C -0.015 4.015 19 O -0.306 6.306 20 C -0.018 4.018 21 C -0.166 4.166 22 C 0.055 3.945 23 H 0.075 0.925 24 O -0.369 6.369 25 H 0.074 0.926 26 H 0.044 0.956 27 H -0.005 1.005 28 H 0.151 0.849 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 19.606 -11.282 3.558 22.898 hybrid contribution -0.137 1.717 -1.562 2.325 sum 19.469 -9.565 1.997 21.783 Atomic orbital electron populations 1.69903 1.06159 1.26907 1.50897 1.24915 0.94761 0.98966 0.94720 0.86813 0.80302 0.83868 0.78434 1.20363 1.21090 1.19235 1.21058 0.88929 0.94807 1.50677 0.90303 1.20002 0.96684 0.85029 0.94653 1.60455 1.04245 1.16637 1.49377 1.22051 0.90983 0.94171 0.99479 1.22563 0.94684 0.96923 0.99633 0.90391 1.22221 0.97188 0.98031 0.96358 1.22679 0.94273 0.98360 1.00520 1.20868 0.95437 0.95535 0.93441 1.22092 1.01770 0.98118 0.96124 1.22622 0.89799 0.93321 0.95721 1.87894 1.34798 1.45849 1.62009 1.22675 1.00250 0.89868 0.89056 1.21851 0.97535 0.99707 0.97479 1.22390 0.93135 0.93696 0.85289 0.92525 1.86469 1.79690 1.54474 1.16235 0.92617 0.95647 1.00454 0.84880 0.91690 0.96697 0.90984 0.91205 0.91335 0.91571 0.91061 0.90099 0.92816 0.88894 0.93205 0.89227 0.90097 0.91396 0.77708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.70 9.87 -34.44 -0.34 -15.04 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 C 0.16 3.94 4.51 -4.97 -0.02 3.92 16 10 N -0.68 -13.47 6.31 -115.06 -0.73 -14.20 16 11 C 0.06 1.00 4.74 -3.82 -0.02 0.98 16 12 C -0.12 -1.53 2.89 -89.40 -0.26 -1.79 16 13 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 14 C -0.10 -1.28 5.84 -24.99 -0.15 -1.43 16 15 C -0.12 -1.31 4.87 -24.99 -0.12 -1.43 16 16 C -0.05 -0.56 0.53 -154.00 -0.08 -0.64 16 17 C -0.14 -1.48 4.77 -26.88 -0.13 -1.60 16 18 C 0.06 0.60 6.64 37.27 0.25 0.85 16 19 O -0.39 -4.37 10.75 -35.23 -0.38 -4.75 16 20 C 0.06 0.56 6.65 37.27 0.25 0.81 16 21 C -0.13 -1.32 4.14 -26.88 -0.11 -1.44 16 22 C 0.11 1.30 3.35 -25.86 -0.09 1.22 16 23 H 0.06 0.66 7.36 -51.93 -0.38 0.28 16 24 O -0.56 -6.17 11.64 -35.23 -0.41 -6.58 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 26 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 27 H -0.02 -0.53 7.57 -51.93 -0.39 -0.92 16 28 H 0.33 6.48 8.72 -39.29 -0.34 6.14 16 29 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.99 7.25 -51.93 -0.38 0.62 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16 34 H 0.07 0.66 6.14 -51.93 -0.32 0.35 16 35 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.08 0.85 7.31 -51.93 -0.38 0.47 16 37 H 0.05 0.49 6.48 -51.93 -0.34 0.16 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.45 7.48 -51.93 -0.39 0.06 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.86 7.49 -51.93 -0.39 0.47 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.38 2.98 9.10 45.56 0.41 3.40 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -31.25 326.42 -8.04 -39.29 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.63 Total: 5.01 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.92 Total: -13.72 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.05 Total: -41.01 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.79 Total: -11.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.25 -8.04 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517146031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.432 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds