Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47163 * 269.99944 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.46705 * 150.00168 * 3 2 1 7 7 C 1.37876 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99683 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.01797 * 53.59720 * 12 11 10 14 14 C 1.54306 * 110.03561 * 292.15027 * 12 11 10 15 15 C 1.54996 * 104.26680 * 217.21755 * 14 12 11 16 16 C 1.54307 * 102.70525 * 37.33092 * 15 14 12 17 17 C 1.52486 * 110.11510 * 81.62175 * 16 15 14 18 18 C 1.53220 * 109.21454 * 66.51491 * 17 16 15 19 19 O 1.42916 * 109.32701 * 56.53278 * 18 17 16 20 20 C 1.42920 * 114.23095 * 298.33105 * 19 18 17 21 21 C 1.52490 * 110.11240 * 203.81382 * 16 15 14 22 22 C 1.53667 * 104.87705 * 322.72361 * 16 15 14 23 23 H 1.08997 * 110.05757 * 142.24836 * 22 16 15 24 24 O 1.42898 * 110.05859 * 263.75807 * 22 16 15 25 25 H 0.97001 * 119.99403 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 27 27 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 28 28 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 29 29 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 30 30 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 31 31 H 1.08999 * 110.47966 * 335.91280 * 14 12 11 32 32 H 1.09001 * 110.47621 * 98.52165 * 14 12 11 33 33 H 1.09000 * 110.76455 * 279.02777 * 15 14 12 34 34 H 1.08996 * 110.92297 * 155.70975 * 15 14 12 35 35 H 1.09000 * 109.51404 * 186.43275 * 17 16 15 36 36 H 1.09002 * 109.51732 * 306.59373 * 17 16 15 37 37 H 1.09000 * 109.49456 * 296.58168 * 18 17 16 38 38 H 1.08992 * 109.52080 * 176.50116 * 18 17 16 39 39 H 1.09000 * 109.49826 * 301.72109 * 20 19 18 40 40 H 1.09003 * 109.52049 * 181.64781 * 20 19 18 41 41 H 1.08996 * 109.51338 * 53.41461 * 21 16 15 42 42 H 1.08996 * 109.51296 * 173.52370 * 21 16 15 43 43 H 0.96704 * 113.99429 * 178.47251 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5793 -0.0022 11 6 5.4695 -2.6185 -0.0022 12 6 5.9408 -4.0742 -0.0028 13 1 5.4775 -4.6161 -0.8273 14 6 5.5836 -4.7460 1.3397 15 6 6.7889 -5.6747 1.6347 16 6 7.9883 -4.8440 1.1323 17 6 8.4007 -3.8257 2.1898 18 6 8.9517 -4.5647 3.4137 19 8 10.0360 -5.4040 3.0109 20 6 9.6744 -6.4197 2.0727 21 6 9.1558 -5.7630 0.7892 22 6 7.4746 -4.1321 -0.1289 23 1 7.8839 -3.1233 -0.1817 24 8 7.8430 -4.8728 -1.2941 25 1 -0.4849 0.8401 -0.0004 26 1 3.8752 -0.6807 0.8888 27 1 3.8744 -0.6803 -0.8911 28 1 3.6252 -3.0951 -0.7837 29 1 5.8464 -2.1152 0.8882 30 1 5.8464 -2.1140 -0.8918 31 1 5.4782 -3.9972 2.1247 32 1 4.6678 -5.3292 1.2425 33 1 6.7039 -6.6072 1.0767 34 1 6.8759 -5.8720 2.7031 35 1 9.1707 -3.1701 1.7833 36 1 7.5339 -3.2330 2.4822 37 1 8.1639 -5.1751 3.8552 38 1 9.3054 -3.8407 4.1476 39 1 8.8939 -7.0489 2.5005 40 1 10.5477 -7.0299 1.8419 41 1 8.8205 -6.5340 0.0955 42 1 9.9541 -5.1811 0.3288 43 1 7.5268 -4.4861 -2.1222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517146031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -137.650075 kcal Electronic energy + Delta-G solvation = -21668.903133 eV Core-core repulsion = 18518.919019 eV Total energy + Delta-G solvation = -3149.984113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62628 -38.97910 -37.11730 -35.92828 -34.69290 -33.07376 -32.00501 -30.37250 -28.61181 -27.05881 -24.61730 -24.27060 -23.44440 -22.94708 -21.03449 -19.42597 -18.97425 -18.12186 -17.42206 -16.87629 -16.78005 -16.15220 -15.93394 -15.90280 -15.42553 -15.14379 -15.04431 -14.87256 -14.39520 -13.91428 -13.81802 -13.47936 -13.24030 -13.14617 -12.87160 -12.67621 -12.38872 -12.32058 -12.18826 -11.84779 -11.83744 -11.57937 -11.49941 -11.32150 -11.30793 -10.95273 -10.83337 -10.75964 -10.32352 -9.15266 -8.32028 -6.36731 1.32898 1.35232 1.46243 2.32149 2.98965 3.02000 3.16504 3.32990 3.54266 3.72655 3.86147 3.99253 4.13622 4.17590 4.26950 4.30148 4.36592 4.48212 4.51242 4.57315 4.65486 4.73037 4.77114 4.78072 4.83960 4.84233 4.92511 5.00944 5.05291 5.10124 5.15568 5.17808 5.31787 5.39562 5.44877 5.50753 5.52378 5.93490 6.30294 6.53209 6.64064 6.74830 6.86214 7.28492 8.84786 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032059 B = 0.003873 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.168730 B = 7227.826902 C = 7429.003936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.175 3.825 10 N -0.684 5.684 11 C 0.066 3.934 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.101 4.101 15 C -0.112 4.112 16 C -0.053 4.053 17 C -0.141 4.141 18 C 0.060 3.940 19 O -0.402 6.402 20 C 0.056 3.944 21 C -0.121 4.121 22 C 0.121 3.879 23 H 0.058 0.942 24 O -0.569 6.569 25 H 0.268 0.732 26 H 0.024 0.976 27 H -0.016 1.016 28 H 0.335 0.665 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.630 -10.644 2.432 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.315 5.315 11 C -0.063 4.063 12 C -0.129 4.129 13 H 0.095 0.905 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.053 4.053 17 C -0.179 4.179 18 C -0.016 4.016 19 O -0.322 6.322 20 C -0.020 4.020 21 C -0.159 4.159 22 C 0.061 3.939 23 H 0.076 0.924 24 O -0.376 6.376 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.002 0.998 28 H 0.152 0.848 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 21.898 -10.957 3.629 24.754 hybrid contribution -0.898 1.509 -1.610 2.382 sum 21.000 -9.449 2.020 23.117 Atomic orbital electron populations 1.70058 1.08196 1.28252 1.52279 1.25897 0.95647 1.03351 0.94138 0.85647 0.79327 0.78350 0.79163 1.19120 1.20610 1.17415 1.21347 0.91451 0.93404 1.50477 0.94489 1.19743 0.93656 0.87361 0.94621 1.60340 1.07069 1.14364 1.49719 1.22110 0.88098 0.96292 0.99815 1.22481 0.95939 0.94865 0.99631 0.90533 1.22184 0.97647 0.98066 0.96017 1.22610 0.93187 0.97883 1.01223 1.20886 0.95509 0.95690 0.93240 1.22071 1.01570 0.97987 0.96269 1.22715 0.89762 0.93511 0.95646 1.87879 1.35627 1.46331 1.62338 1.22778 1.01146 0.89675 0.88400 1.21772 0.96944 0.99372 0.97794 1.22279 0.91640 0.94009 0.85945 0.92415 1.86453 1.79675 1.54712 1.16791 0.92329 0.95784 0.99812 0.84753 0.91708 0.95786 0.92058 0.92422 0.91154 0.90588 0.91237 0.90407 0.92236 0.87758 0.92453 0.87906 0.90319 0.92221 0.76171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.53 -30.61 9.87 25.60 0.25 -30.36 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 9 C 0.17 8.25 4.51 85.56 0.39 8.64 16 10 N -0.68 -26.93 6.31 -517.94 -3.27 -30.20 16 11 C 0.07 1.99 4.74 86.31 0.41 2.39 16 12 C -0.11 -2.68 2.89 -10.01 -0.03 -2.71 16 13 H 0.08 1.91 7.96 -2.38 -0.02 1.89 16 14 C -0.10 -2.50 5.84 31.72 0.19 -2.32 16 15 C -0.11 -2.22 4.87 31.72 0.15 -2.07 16 16 C -0.05 -1.04 0.53 -51.85 -0.03 -1.06 16 17 C -0.14 -2.65 4.77 30.50 0.15 -2.50 16 18 C 0.06 1.05 6.64 72.06 0.48 1.53 16 19 O -0.40 -8.28 10.75 -148.98 -1.60 -9.88 16 20 C 0.06 0.96 6.65 72.05 0.48 1.44 16 21 C -0.12 -2.27 4.14 30.50 0.13 -2.14 16 22 C 0.12 2.53 3.35 31.16 0.10 2.63 16 23 H 0.06 1.22 7.36 -2.39 -0.02 1.20 16 24 O -0.57 -11.25 11.64 -148.98 -1.73 -12.99 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 27 H -0.02 -0.72 7.57 -2.39 -0.02 -0.74 16 28 H 0.34 13.02 8.72 -89.70 -0.78 12.24 16 29 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.64 7.25 -2.39 -0.02 1.63 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.39 7.98 -2.39 -0.02 1.38 16 34 H 0.08 1.37 6.14 -2.39 -0.01 1.36 16 35 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 36 H 0.08 1.51 7.31 -2.39 -0.02 1.49 16 37 H 0.06 0.97 6.48 -2.39 -0.02 0.95 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 0.89 7.48 -2.39 -0.02 0.87 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.52 7.49 -2.39 -0.02 1.50 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.39 5.32 9.10 -74.05 -0.67 4.64 16 Total: -1.00 -66.89 326.42 -1.81 -68.69 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.51 Total: 23.27 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.13 Total: -25.65 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -2.97 Total: -89.14 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -3.34 Total: -22.86 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -66.89 -1.81 -68.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517146031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.956 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds