Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99914 * 3 2 1 5 5 H 1.48499 * 109.47281 * 29.99528 * 3 2 1 6 6 H 1.48504 * 109.47488 * 149.99712 * 3 2 1 7 7 C 1.37870 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00204 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00155 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00001 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46937 * 179.97438 * 11 10 9 13 13 H 1.09004 * 110.43485 * 303.92339 * 12 11 10 14 14 C 1.54922 * 110.48580 * 66.45673 * 12 11 10 15 15 C 1.54969 * 102.95889 * 156.47630 * 14 12 11 16 16 C 1.54115 * 104.02295 * 322.60347 * 15 14 12 17 17 C 1.52783 * 109.97095 * 142.61535 * 16 15 14 18 18 C 1.53165 * 109.17182 * 176.95096 * 17 16 15 19 19 O 1.42904 * 109.36866 * 303.06682 * 18 17 16 20 20 C 1.42911 * 114.19777 * 61.49100 * 19 18 17 21 21 C 1.52784 * 109.70443 * 263.74200 * 16 15 14 22 22 C 1.53550 * 107.03815 * 23.10417 * 16 15 14 23 23 H 1.08996 * 110.10468 * 241.00356 * 22 16 15 24 24 O 1.42898 * 110.05513 * 119.52639 * 22 16 15 25 25 H 0.97003 * 120.00289 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47376 * 59.99824 * 9 7 2 27 27 H 1.09004 * 109.46968 * 299.99735 * 9 7 2 28 28 H 1.00895 * 111.00051 * 303.95331 * 10 9 7 29 29 H 1.08998 * 109.46669 * 60.00676 * 11 10 9 30 30 H 1.08989 * 109.47343 * 300.00250 * 11 10 9 31 31 H 1.09002 * 110.74938 * 274.89502 * 14 12 11 32 32 H 1.08999 * 110.74711 * 38.05944 * 14 12 11 33 33 H 1.08997 * 110.50663 * 81.11540 * 15 14 12 34 34 H 1.09006 * 110.49748 * 203.79975 * 15 14 12 35 35 H 1.09000 * 109.51849 * 296.86703 * 17 16 15 36 36 H 1.09008 * 109.51812 * 57.04403 * 17 16 15 37 37 H 1.09001 * 109.49153 * 183.09814 * 18 17 16 38 38 H 1.09009 * 109.48567 * 63.03742 * 18 17 16 39 39 H 1.09002 * 109.48741 * 178.54148 * 20 19 18 40 40 H 1.08997 * 109.51457 * 58.48318 * 20 19 18 41 41 H 1.09001 * 109.52726 * 302.78779 * 21 16 15 42 42 H 1.09002 * 109.52243 * 62.97593 * 21 16 15 43 43 H 0.96708 * 113.99688 * 181.51314 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0022 11 6 5.4698 -2.6180 0.0022 12 6 5.9411 -4.0735 0.0040 13 1 5.5161 -4.6101 0.8523 14 6 5.5566 -4.7696 -1.3255 15 6 6.5799 -5.9296 -1.4190 16 6 7.8829 -5.3241 -0.8616 17 6 8.6376 -6.3719 -0.0450 18 6 9.9638 -5.7752 0.4359 19 8 10.7175 -5.3249 -0.6917 20 6 10.0774 -4.2978 -1.4517 21 6 8.7561 -4.8309 -2.0142 22 6 7.4826 -4.1451 0.0370 23 1 7.9081 -3.2187 -0.3487 24 8 7.9343 -4.3722 1.3736 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6798 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6255 -3.0946 0.7838 29 1 5.8466 -2.1134 0.8918 30 1 5.8466 -2.1147 -0.8881 31 1 4.5384 -5.1557 -1.2788 32 1 5.6705 -4.0856 -2.1665 33 1 6.2593 -6.7720 -0.8060 34 1 6.7122 -6.2393 -2.4558 35 1 8.0366 -6.6650 0.8158 36 1 8.8353 -7.2451 -0.6668 37 1 10.5314 -6.5356 0.9725 38 1 9.7645 -4.9338 1.0997 39 1 10.7267 -3.9951 -2.2732 40 1 9.8793 -3.4395 -0.8096 41 1 8.9577 -5.6559 -2.6974 42 1 8.2390 -4.0331 -2.5474 43 1 7.6915 -3.6722 1.9951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517146032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -111.311337 kcal Electronic energy + Delta-G solvation = -21743.956874 eV Core-core repulsion = 18595.114895 eV Total energy + Delta-G solvation = -3148.841980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75603 -37.80961 -35.67385 -35.15928 -32.85093 -31.73219 -31.21739 -29.04963 -26.98159 -25.70821 -23.77774 -23.60356 -21.69737 -21.16015 -20.24735 -18.69931 -17.49354 -16.83065 -16.39793 -16.04634 -15.31568 -14.86423 -14.70972 -14.44101 -14.41258 -13.99795 -13.78269 -13.35847 -13.08270 -12.73252 -12.43963 -12.27232 -12.15308 -11.91120 -11.63230 -11.45281 -11.27158 -11.01020 -10.85714 -10.74913 -10.46594 -10.44194 -10.34913 -10.09681 -9.92581 -9.64177 -9.40928 -9.31934 -8.63118 -7.52742 -6.09893 -4.08205 3.24919 3.32308 3.33713 3.83420 4.01238 4.32786 4.37823 4.44542 4.68422 4.87559 4.97330 5.01563 5.06753 5.15122 5.22742 5.28088 5.33590 5.43807 5.50383 5.54320 5.60512 5.64281 5.72899 5.75409 5.84388 5.86896 5.97365 6.03837 6.06618 6.10436 6.17854 6.35352 6.41806 6.51746 6.71124 6.96097 7.16302 7.53887 7.55666 7.83786 8.26649 8.60360 8.98016 9.51856 11.03403 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034929 B = 0.003838 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.437851 B = 7293.901002 C = 7512.352637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.677 5.677 11 C 0.064 3.936 12 C -0.119 4.119 13 H 0.081 0.919 14 C -0.102 4.102 15 C -0.117 4.117 16 C -0.055 4.055 17 C -0.125 4.125 18 C 0.053 3.947 19 O -0.391 6.391 20 C 0.061 3.939 21 C -0.144 4.144 22 C 0.111 3.889 23 H 0.058 0.942 24 O -0.559 6.559 25 H 0.264 0.736 26 H -0.017 1.017 27 H 0.021 0.979 28 H 0.335 0.665 29 H 0.014 0.986 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.732 -10.476 -0.656 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.307 5.307 11 C -0.067 4.067 12 C -0.138 4.138 13 H 0.099 0.901 14 C -0.139 4.139 15 C -0.155 4.155 16 C -0.055 4.055 17 C -0.163 4.163 18 C -0.023 4.023 19 O -0.310 6.310 20 C -0.016 4.016 21 C -0.182 4.182 22 C 0.052 3.948 23 H 0.076 0.924 24 O -0.365 6.365 25 H 0.074 0.926 26 H 0.000 1.000 27 H 0.039 0.961 28 H 0.152 0.848 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 19.935 -11.027 -1.663 22.842 hybrid contribution -0.089 1.913 1.155 2.236 sum 19.846 -9.114 -0.509 21.845 Atomic orbital electron populations 1.69895 1.06165 1.26918 1.50878 1.24908 0.94752 0.98958 0.94710 0.86820 0.80188 0.83865 0.78589 1.20129 1.21162 1.19374 1.21053 0.88928 0.94816 1.50708 0.90296 1.19995 0.96688 0.85045 0.94630 1.60440 1.04174 1.16676 1.49408 1.21978 0.91100 0.94211 0.99362 1.22729 0.94522 0.96823 0.99688 0.90083 1.22319 0.98992 0.96104 0.96534 1.22523 0.93875 0.98431 1.00636 1.20963 0.95581 0.94742 0.94195 1.21915 0.96926 0.97375 1.00053 1.22887 0.91520 0.99887 0.88030 1.87858 1.45083 1.55979 1.42049 1.22572 0.93813 0.90089 0.95102 1.22254 0.96248 1.01986 0.97688 1.22510 0.92920 0.96802 0.82615 0.92364 1.86525 1.79667 1.50709 1.19610 0.92607 0.99986 0.96115 0.84804 0.96766 0.91787 0.90581 0.91324 0.91424 0.91452 0.90335 0.92186 0.90081 0.90179 0.89273 0.93280 0.90743 0.90591 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.98 5.47 -17.83 -0.10 1.89 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.68 9.87 -34.44 -0.34 -15.02 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.16 3.93 4.51 -4.97 -0.02 3.90 16 10 N -0.68 -13.39 6.29 -115.06 -0.72 -14.11 16 11 C 0.06 0.98 4.98 -3.83 -0.02 0.97 16 12 C -0.12 -1.49 2.77 -88.90 -0.25 -1.74 16 13 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 14 C -0.10 -1.28 6.14 -24.68 -0.15 -1.44 16 15 C -0.12 -1.25 5.91 -25.11 -0.15 -1.40 16 16 C -0.05 -0.57 0.63 -153.86 -0.10 -0.67 16 17 C -0.13 -1.31 4.34 -26.76 -0.12 -1.42 16 18 C 0.05 0.56 6.50 37.24 0.24 0.81 16 19 O -0.39 -4.67 10.75 -35.23 -0.38 -5.05 16 20 C 0.06 0.61 6.62 37.25 0.25 0.86 16 21 C -0.14 -1.41 4.58 -26.75 -0.12 -1.53 16 22 C 0.11 1.20 2.77 -25.74 -0.07 1.13 16 23 H 0.06 0.64 6.39 -51.93 -0.33 0.31 16 24 O -0.56 -5.68 9.02 -35.23 -0.32 -5.99 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H -0.02 -0.42 7.20 -51.93 -0.37 -0.79 16 27 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.33 6.48 8.72 -39.29 -0.34 6.13 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 1.01 8.10 -51.94 -0.42 0.59 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 33 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 34 H 0.07 0.66 7.81 -51.93 -0.41 0.26 16 35 H 0.08 0.85 7.62 -51.93 -0.40 0.46 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.88 5.53 -51.92 -0.29 0.60 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.49 6.89 -51.93 -0.36 0.13 16 41 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.37 2.87 9.10 45.56 0.41 3.28 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -30.91 325.55 -8.04 -38.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.68 Total: 4.97 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.94 Total: -13.66 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.05 Total: -40.88 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.70 Total: -11.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.91 -8.04 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517146032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.358 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds