Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99914 * 3 2 1 5 5 H 1.48499 * 109.47281 * 29.99528 * 3 2 1 6 6 H 1.48504 * 109.47488 * 149.99712 * 3 2 1 7 7 C 1.37870 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00204 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00155 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00001 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46937 * 179.97438 * 11 10 9 13 13 H 1.09004 * 110.43485 * 303.92339 * 12 11 10 14 14 C 1.54922 * 110.48580 * 66.45673 * 12 11 10 15 15 C 1.54969 * 102.95889 * 156.47630 * 14 12 11 16 16 C 1.54115 * 104.02295 * 322.60347 * 15 14 12 17 17 C 1.52783 * 109.97095 * 142.61535 * 16 15 14 18 18 C 1.53165 * 109.17182 * 176.95096 * 17 16 15 19 19 O 1.42904 * 109.36866 * 303.06682 * 18 17 16 20 20 C 1.42911 * 114.19777 * 61.49100 * 19 18 17 21 21 C 1.52784 * 109.70443 * 263.74200 * 16 15 14 22 22 C 1.53550 * 107.03815 * 23.10417 * 16 15 14 23 23 H 1.08996 * 110.10468 * 241.00356 * 22 16 15 24 24 O 1.42898 * 110.05513 * 119.52639 * 22 16 15 25 25 H 0.97003 * 120.00289 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47376 * 59.99824 * 9 7 2 27 27 H 1.09004 * 109.46968 * 299.99735 * 9 7 2 28 28 H 1.00895 * 111.00051 * 303.95331 * 10 9 7 29 29 H 1.08998 * 109.46669 * 60.00676 * 11 10 9 30 30 H 1.08989 * 109.47343 * 300.00250 * 11 10 9 31 31 H 1.09002 * 110.74938 * 274.89502 * 14 12 11 32 32 H 1.08999 * 110.74711 * 38.05944 * 14 12 11 33 33 H 1.08997 * 110.50663 * 81.11540 * 15 14 12 34 34 H 1.09006 * 110.49748 * 203.79975 * 15 14 12 35 35 H 1.09000 * 109.51849 * 296.86703 * 17 16 15 36 36 H 1.09008 * 109.51812 * 57.04403 * 17 16 15 37 37 H 1.09001 * 109.49153 * 183.09814 * 18 17 16 38 38 H 1.09009 * 109.48567 * 63.03742 * 18 17 16 39 39 H 1.09002 * 109.48741 * 178.54148 * 20 19 18 40 40 H 1.08997 * 109.51457 * 58.48318 * 20 19 18 41 41 H 1.09001 * 109.52726 * 302.78779 * 21 16 15 42 42 H 1.09002 * 109.52243 * 62.97593 * 21 16 15 43 43 H 0.96708 * 113.99688 * 181.51314 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0022 11 6 5.4698 -2.6180 0.0022 12 6 5.9411 -4.0735 0.0040 13 1 5.5161 -4.6101 0.8523 14 6 5.5566 -4.7696 -1.3255 15 6 6.5799 -5.9296 -1.4190 16 6 7.8829 -5.3241 -0.8616 17 6 8.6376 -6.3719 -0.0450 18 6 9.9638 -5.7752 0.4359 19 8 10.7175 -5.3249 -0.6917 20 6 10.0774 -4.2978 -1.4517 21 6 8.7561 -4.8309 -2.0142 22 6 7.4826 -4.1451 0.0370 23 1 7.9081 -3.2187 -0.3487 24 8 7.9343 -4.3722 1.3736 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6798 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6255 -3.0946 0.7838 29 1 5.8466 -2.1134 0.8918 30 1 5.8466 -2.1147 -0.8881 31 1 4.5384 -5.1557 -1.2788 32 1 5.6705 -4.0856 -2.1665 33 1 6.2593 -6.7720 -0.8060 34 1 6.7122 -6.2393 -2.4558 35 1 8.0366 -6.6650 0.8158 36 1 8.8353 -7.2451 -0.6668 37 1 10.5314 -6.5356 0.9725 38 1 9.7645 -4.9338 1.0997 39 1 10.7267 -3.9951 -2.2732 40 1 9.8793 -3.4395 -0.8096 41 1 8.9577 -5.6559 -2.6974 42 1 8.2390 -4.0331 -2.5474 43 1 7.6915 -3.6722 1.9951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517146032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -134.533609 kcal Electronic energy + Delta-G solvation = -21744.963868 eV Core-core repulsion = 18595.114895 eV Total energy + Delta-G solvation = -3149.848973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61772 -38.75633 -37.03296 -36.12679 -34.70723 -33.09393 -31.99481 -30.39649 -28.46492 -26.71084 -24.88974 -24.55485 -23.05510 -22.60344 -21.30174 -19.53651 -18.97928 -18.31445 -17.30057 -16.91437 -16.71015 -16.07432 -15.95483 -15.61330 -15.48152 -15.15708 -14.98583 -14.71492 -14.39927 -14.03803 -13.65583 -13.55235 -13.16912 -13.09584 -12.78357 -12.62468 -12.49899 -12.34831 -12.14859 -11.93624 -11.76772 -11.64597 -11.50025 -11.39749 -11.25425 -10.92609 -10.82368 -10.57309 -10.23716 -9.12839 -8.31622 -6.36505 1.34025 1.35353 1.46129 2.32467 3.02520 3.06344 3.19421 3.30076 3.58002 3.72380 3.88947 4.00812 4.16235 4.19461 4.27915 4.34011 4.42827 4.48738 4.56727 4.59248 4.67275 4.74866 4.77855 4.82932 4.85223 4.95326 4.96870 5.04968 5.06416 5.11499 5.15629 5.22668 5.32500 5.39009 5.49052 5.50500 5.53145 5.94187 6.37294 6.53680 6.64719 6.75388 6.85412 7.28819 8.85202 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034929 B = 0.003838 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.437851 B = 7293.901002 C = 7512.352637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.529 4.529 8 H 0.036 0.964 9 C 0.175 3.825 10 N -0.685 5.685 11 C 0.066 3.934 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.055 4.055 17 C -0.121 4.121 18 C 0.052 3.948 19 O -0.407 6.407 20 C 0.057 3.943 21 C -0.142 4.142 22 C 0.120 3.880 23 H 0.063 0.937 24 O -0.562 6.562 25 H 0.268 0.732 26 H -0.014 1.014 27 H 0.023 0.977 28 H 0.335 0.665 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.136 -9.847 -0.728 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.316 5.316 11 C -0.063 4.063 12 C -0.129 4.129 13 H 0.094 0.906 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.055 4.055 17 C -0.158 4.158 18 C -0.024 4.024 19 O -0.327 6.327 20 C -0.019 4.019 21 C -0.179 4.179 22 C 0.061 3.939 23 H 0.080 0.920 24 O -0.370 6.370 25 H 0.077 0.923 26 H 0.004 0.996 27 H 0.041 0.959 28 H 0.152 0.848 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 22.360 -10.417 -1.727 24.728 hybrid contribution -0.887 1.620 1.189 2.196 sum 21.473 -8.797 -0.538 23.211 Atomic orbital electron populations 1.70053 1.08231 1.28263 1.52286 1.25900 0.95641 1.03381 0.94119 0.85639 0.79266 0.78288 0.79242 1.19063 1.20656 1.17390 1.21352 0.91512 0.93391 1.50498 0.94550 1.19738 0.93607 0.87388 0.94622 1.60328 1.07134 1.14370 1.49725 1.22047 0.88116 0.96315 0.99865 1.22638 0.96028 0.94761 0.99475 0.90562 1.22279 0.98648 0.96805 0.96348 1.22472 0.93307 0.97586 1.01383 1.20970 0.95483 0.94600 0.94440 1.21863 0.96752 0.97362 0.99861 1.22925 0.91616 1.00030 0.87821 1.87840 1.45830 1.56528 1.42463 1.22701 0.94133 0.89668 0.95401 1.22241 0.96018 1.02277 0.97379 1.22372 0.91143 0.97207 0.83210 0.91964 1.86516 1.79489 1.51479 1.19482 0.92333 0.99612 0.95914 0.84772 0.95580 0.91714 0.92383 0.91881 0.91380 0.90446 0.90776 0.92019 0.89330 0.90448 0.87858 0.93225 0.90411 0.90058 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.44 0.30 -58.94 16 2 C 0.01 0.41 5.47 84.65 0.46 0.88 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.51 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -30.61 9.87 25.60 0.25 -30.35 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.18 8.21 4.51 85.56 0.39 8.60 16 10 N -0.69 -26.77 6.29 -517.93 -3.26 -30.03 16 11 C 0.07 1.92 4.98 86.30 0.43 2.35 16 12 C -0.11 -2.61 2.77 -9.68 -0.03 -2.64 16 13 H 0.08 1.91 8.08 -2.38 -0.02 1.89 16 14 C -0.10 -2.51 6.14 31.92 0.20 -2.31 16 15 C -0.11 -2.17 5.91 31.65 0.19 -1.98 16 16 C -0.05 -1.03 0.63 -51.76 -0.03 -1.06 16 17 C -0.12 -2.29 4.34 30.58 0.13 -2.16 16 18 C 0.05 1.01 6.50 72.04 0.47 1.48 16 19 O -0.41 -8.90 10.75 -148.98 -1.60 -10.50 16 20 C 0.06 1.02 6.62 72.04 0.48 1.49 16 21 C -0.14 -2.43 4.58 30.58 0.14 -2.29 16 22 C 0.12 2.35 2.77 31.24 0.09 2.43 16 23 H 0.06 1.20 6.39 -2.39 -0.02 1.19 16 24 O -0.56 -10.14 9.02 -148.98 -1.34 -11.48 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H -0.01 -0.63 7.20 -2.38 -0.02 -0.65 16 27 H 0.02 1.07 7.57 -2.38 -0.02 1.05 16 28 H 0.34 13.00 8.72 -89.70 -0.78 12.22 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.60 8.02 -2.39 -0.02 1.58 16 33 H 0.07 1.34 7.84 -2.39 -0.02 1.32 16 34 H 0.08 1.38 7.81 -2.38 -0.02 1.36 16 35 H 0.07 1.47 7.62 -2.39 -0.02 1.46 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.55 5.53 -2.38 -0.01 1.53 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.05 0.87 6.89 -2.39 -0.02 0.85 16 41 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.39 4.96 9.10 -74.05 -0.67 4.29 16 Total: -1.00 -66.38 325.55 -1.38 -67.76 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.52 Total: 23.23 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.16 Total: -25.55 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.96 Total: -88.96 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -2.95 Total: -21.98 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -66.38 -1.38 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517146032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.772 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds