Wall clock time and date at job start Mon Mar 30 2020 01:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46839 * 2 1 4 4 C 1.50704 * 109.47122 * 240.00219 * 2 1 3 5 5 C 1.36130 * 120.17168 * 266.61561 * 4 2 1 6 6 C 1.39330 * 120.98820 * 180.02562 * 5 4 2 7 7 C 1.36135 * 120.98972 * 0.02562 * 6 5 4 8 8 C 1.40499 * 119.64974 * 359.97438 * 7 6 5 9 9 C 1.40550 * 121.28554 * 179.97438 * 8 7 6 10 10 C 1.36088 * 119.65579 * 180.02562 * 9 8 7 11 11 C 1.39391 * 120.99204 * 0.02562 * 10 9 8 12 12 C 1.36094 * 120.99232 * 359.95721 * 11 10 9 13 13 C 1.40495 * 120.17297 * 86.63938 * 4 2 1 14 14 N 1.46896 * 109.46933 * 120.00072 * 2 1 3 15 15 C 1.46901 * 111.00291 * 311.89058 * 14 2 1 16 16 C 1.46904 * 110.99805 * 187.93460 * 14 2 1 17 17 C 1.50700 * 109.47084 * 189.99974 * 16 14 2 18 18 H 1.07997 * 120.00011 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00012 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00173 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47047 * 59.99710 * 21 19 17 23 23 H 1.48494 * 109.47157 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47204 * 300.00226 * 21 19 17 25 25 H 1.08994 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46815 * 299.99858 * 1 2 3 27 27 H 1.08998 * 109.46871 * 60.00017 * 1 2 3 28 28 H 1.07994 * 119.50542 * 0.04767 * 5 4 2 29 29 H 1.08000 * 119.50509 * 179.97438 * 6 5 4 30 30 H 1.07993 * 120.17621 * 179.72347 * 7 6 5 31 31 H 1.08001 * 120.17566 * 359.97438 * 9 8 7 32 32 H 1.07994 * 119.50860 * 179.97438 * 10 9 8 33 33 H 1.07996 * 119.50447 * 179.97438 * 11 10 9 34 34 H 1.07997 * 120.17173 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.46783 * 66.46295 * 15 14 2 36 36 H 1.08996 * 109.46851 * 186.45645 * 15 14 2 37 37 H 1.08993 * 109.47253 * 306.46436 * 15 14 2 38 38 H 1.08996 * 109.47074 * 310.00648 * 16 14 2 39 39 H 1.09007 * 109.46440 * 70.00287 * 16 14 2 40 40 H 0.96996 * 119.99400 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.3260 -2.0388 -1.1817 6 6 2.7920 -2.7123 -2.3089 7 6 2.9678 -2.0615 -3.4916 8 6 2.6753 -0.6901 -3.5804 9 6 2.8446 0.0158 -4.7839 10 6 2.5516 1.3439 -4.8325 11 6 2.0854 2.0178 -3.7049 12 6 1.9089 1.3670 -2.5227 13 6 2.2007 -0.0050 -2.4339 14 7 2.0197 -0.6925 1.1994 15 6 1.3318 -0.2092 2.4041 16 6 3.4758 -0.5503 1.3318 17 6 3.9731 -1.4662 2.4204 18 1 3.2771 -2.0916 2.9596 19 6 5.3165 -1.5056 2.7279 20 7 6.1640 -0.7436 2.0716 21 14 5.9330 -2.6413 4.0768 22 1 5.6030 -4.0470 3.7295 23 1 7.4049 -2.4975 4.2107 24 1 5.2811 -2.2829 5.3620 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.1954 -2.5787 -0.2556 29 1 3.0179 -3.7664 -2.2431 30 1 3.3339 -2.5955 -4.3559 31 1 3.2062 -0.4928 -5.6654 32 1 2.6830 1.8841 -5.7584 33 1 1.8607 3.0720 -3.7704 34 1 1.5466 1.9021 -1.6574 35 1 0.2802 -0.4923 2.3602 36 1 1.7910 -0.6531 3.2873 37 1 1.4139 0.8763 2.4585 38 1 3.9539 -0.8141 0.3884 39 1 3.7184 0.4815 1.5861 40 1 7.1091 -0.7716 2.2877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530724203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:05 Heat of formation + Delta-G solvation = 30.745090 kcal Electronic energy + Delta-G solvation = -20427.335798 eV Core-core repulsion = 17591.962766 eV Total energy + Delta-G solvation = -2835.373031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47590 -38.96702 -37.01587 -35.07648 -33.83939 -31.54003 -31.02485 -30.02272 -28.49072 -27.08256 -24.51288 -23.87531 -23.81253 -22.71581 -20.50836 -18.54323 -18.25662 -17.94857 -17.17231 -16.70394 -16.14670 -15.84998 -15.35188 -14.99831 -14.77595 -14.64975 -14.24494 -14.20942 -13.90119 -13.50825 -13.38124 -13.22568 -13.05442 -12.75248 -12.57586 -12.49466 -12.38065 -12.20308 -12.07634 -11.82612 -11.71577 -11.37725 -11.22326 -10.67655 -10.54905 -9.42974 -9.02088 -8.64486 -8.19161 -6.29384 -0.29708 0.19131 1.20044 1.40015 1.43470 1.51220 2.19805 2.39973 3.12925 3.21506 3.29673 3.68677 3.99639 4.04097 4.13220 4.22505 4.27018 4.35398 4.38229 4.52207 4.55920 4.60845 4.70258 4.74811 4.85328 4.91801 4.98746 5.08449 5.13030 5.16631 5.25647 5.32734 5.38411 5.40580 5.47803 5.60659 5.64237 5.72020 5.87192 6.01535 6.08730 6.21991 6.35102 6.64703 6.87228 7.40056 8.91910 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.005666 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.688372 B = 4940.939114 C = 5417.279150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.116 3.884 3 H 0.027 0.973 4 C -0.076 4.076 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.076 4.076 9 C -0.110 4.110 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.128 4.128 13 C -0.066 4.066 14 N -0.537 5.537 15 C 0.036 3.964 16 C 0.214 3.786 17 C -0.520 4.520 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.012 0.988 38 H 0.005 0.995 39 H -0.051 1.051 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.331 2.034 -12.520 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 H 0.045 0.955 4 C -0.077 4.077 5 C -0.121 4.121 6 C -0.144 4.144 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.127 4.127 10 C -0.141 4.141 11 C -0.136 4.136 12 C -0.146 4.146 13 C -0.067 4.067 14 N -0.261 5.261 15 C -0.112 4.112 16 C 0.088 3.912 17 C -0.558 4.558 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.023 0.977 39 H -0.033 1.033 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.271 1.586 -12.569 16.309 hybrid contribution 1.072 0.440 1.109 1.604 sum -9.199 2.026 -11.460 14.834 Atomic orbital electron populations 1.21832 0.91479 1.02820 1.02589 1.20531 0.96621 0.93652 0.88410 0.95509 1.19718 0.99725 0.94471 0.93740 1.20899 0.97704 0.94856 0.98658 1.21134 0.99390 1.01060 0.92851 1.21290 1.00194 0.93232 0.98720 1.18402 1.00451 0.94676 0.94080 1.21333 0.99641 0.95201 0.96574 1.21201 0.98896 0.94630 0.99404 1.21177 0.98895 1.01101 0.92470 1.21208 1.01089 0.93109 0.99159 1.18202 1.00521 0.94675 0.93274 1.62076 1.05980 1.55858 1.02179 1.22301 0.99245 0.96636 0.92996 1.19311 0.83499 0.92588 0.95827 1.21422 0.92828 1.23190 1.18347 0.91656 1.25924 0.97055 0.97498 0.99198 1.70114 1.03287 1.41173 1.43081 0.85449 0.76856 0.79201 0.79186 1.19249 1.21065 1.19104 0.91886 0.90904 0.91248 0.86421 0.84582 0.82897 0.83029 0.82887 0.83624 0.85889 0.89624 0.92334 0.96979 0.97695 1.03308 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.53 71.99 0.61 -3.18 16 2 C 0.12 4.42 1.75 44.17 0.08 4.50 16 3 H 0.03 1.09 6.57 -2.39 -0.02 1.07 16 4 C -0.08 -2.95 4.18 -19.80 -0.08 -3.03 16 5 C -0.10 -4.06 8.25 22.04 0.18 -3.88 16 6 C -0.13 -4.23 9.95 22.04 0.22 -4.01 16 7 C -0.12 -3.46 9.77 22.33 0.22 -3.24 16 8 C -0.08 -2.39 5.74 -21.30 -0.12 -2.51 16 9 C -0.11 -2.67 9.77 22.33 0.22 -2.45 16 10 C -0.12 -2.69 9.95 22.05 0.22 -2.47 16 11 C -0.12 -2.88 9.95 22.05 0.22 -2.66 16 12 C -0.13 -3.90 9.28 22.34 0.21 -3.69 16 13 C -0.07 -2.34 5.74 -21.30 -0.12 -2.46 16 14 N -0.54 -23.68 3.50 -906.03 -3.17 -26.85 16 15 C 0.04 1.40 8.50 127.69 1.09 2.48 16 16 C 0.21 11.82 4.35 85.56 0.37 12.19 16 17 C -0.52 -29.91 8.36 25.60 0.21 -29.70 16 18 H 0.07 3.64 7.18 -2.91 -0.02 3.62 16 19 C 0.00 0.06 5.46 84.65 0.46 0.52 16 20 N -0.94 -58.04 13.29 21.45 0.28 -57.76 16 21 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 1.90 6.46 -2.39 -0.02 1.88 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.12 5.07 7.24 -2.91 -0.02 5.05 16 29 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.12 3.62 6.45 -2.91 -0.02 3.60 16 35 H 0.09 2.68 6.63 -2.39 -0.02 2.66 16 36 H 0.06 2.46 6.64 -2.39 -0.02 2.44 16 37 H 0.01 0.44 8.12 -2.39 -0.02 0.43 16 38 H 0.00 0.30 6.51 -2.39 -0.02 0.29 16 39 H -0.05 -3.11 8.12 -2.38 -0.02 -3.13 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.26 321.97 4.13 -65.13 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.02 Total: 16.05 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 3.98 Total: -43.57 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.89 Total: -84.61 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.26 4.13 -65.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530724203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.873 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds