Wall clock time and date at job start Mon Mar 30 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00290 * 2 1 4 4 H 1.48508 * 109.46879 * 269.99818 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99443 * 3 2 1 6 6 H 1.48494 * 109.47374 * 149.99685 * 3 2 1 7 7 C 1.37876 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46921 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00015 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99969 * 180.27311 * 11 10 9 14 14 C 1.46494 * 120.00096 * 179.72530 * 13 11 10 15 15 H 1.08999 * 109.47239 * 325.00524 * 14 13 11 16 16 C 1.53008 * 109.47228 * 85.00062 * 14 13 11 17 17 O 1.42899 * 109.46914 * 64.57305 * 16 14 13 18 18 C 1.53002 * 109.47569 * 204.99846 * 14 13 11 19 19 C 1.52996 * 109.47594 * 176.11473 * 18 14 13 20 20 C 1.52998 * 109.47243 * 180.02562 * 19 18 14 21 21 C 1.52998 * 109.46962 * 59.99951 * 20 19 18 22 22 C 1.53001 * 109.47571 * 299.99767 * 21 20 19 23 23 C 1.52998 * 109.46787 * 60.00126 * 22 21 20 24 24 H 0.97000 * 119.99509 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47243 * 60.00300 * 9 7 2 26 26 H 1.08993 * 109.47284 * 299.99872 * 9 7 2 27 27 H 1.08992 * 109.47202 * 59.99837 * 10 9 7 28 28 H 1.09001 * 109.46822 * 299.99614 * 10 9 7 29 29 H 0.97000 * 120.00016 * 359.72191 * 13 11 10 30 30 H 1.08997 * 109.47151 * 184.56729 * 16 14 13 31 31 H 1.08996 * 109.47100 * 304.57003 * 16 14 13 32 32 H 0.96704 * 113.99835 * 180.02562 * 17 16 14 33 33 H 1.08995 * 109.47385 * 296.11978 * 18 14 13 34 34 H 1.09000 * 109.47018 * 300.00189 * 19 18 14 35 35 H 1.08996 * 109.47357 * 59.99934 * 19 18 14 36 36 H 1.09000 * 109.46942 * 299.99837 * 20 19 18 37 37 H 1.09002 * 109.47474 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47054 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47385 * 60.00156 * 21 20 19 40 40 H 1.09000 * 109.47084 * 300.00574 * 22 21 20 41 41 H 1.08994 * 109.47548 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47474 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47424 * 59.99792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 8 0.2788 -4.9672 0.0015 13 7 2.1654 -6.1344 0.0092 14 6 1.4329 -7.4030 0.0159 15 1 0.5220 -7.2935 0.6043 16 6 1.0696 -7.7898 -1.4192 17 8 2.2645 -8.0372 -2.1629 18 6 2.3098 -8.4951 0.6319 19 6 1.5114 -9.7967 0.7278 20 6 2.3881 -10.8885 1.3443 21 6 2.8307 -10.4574 2.7440 22 6 3.6292 -9.1558 2.6482 23 6 2.7525 -8.0639 2.0316 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8878 29 1 3.1354 -6.1344 0.0095 30 1 0.4555 -8.6902 -1.4085 31 1 0.5136 -6.9763 -1.8851 32 1 2.1098 -8.2877 -3.0840 33 1 3.1877 -8.6527 0.0054 34 1 0.6336 -9.6391 1.3543 35 1 1.1957 -10.1036 -0.2693 36 1 3.2662 -11.0462 0.7180 37 1 1.8192 -11.8158 1.4131 38 1 3.4549 -11.2354 3.1835 39 1 1.9526 -10.2997 3.3703 40 1 4.5072 -9.3135 2.0219 41 1 3.9448 -8.8489 3.6452 42 1 3.3214 -7.1367 1.9629 43 1 1.8743 -7.9062 2.6578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566771359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:05 Heat of formation + Delta-G solvation = -130.421752 kcal Electronic energy + Delta-G solvation = -21169.164023 eV Core-core repulsion = 18019.493354 eV Total energy + Delta-G solvation = -3149.670670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93054 -38.37080 -36.72436 -34.37483 -33.40210 -31.63725 -30.93220 -30.53617 -27.96032 -25.62682 -23.67929 -22.58909 -21.73287 -20.38646 -20.13491 -19.34412 -17.41786 -16.84339 -16.19651 -15.58040 -15.19233 -15.04467 -14.46045 -14.39609 -14.26557 -14.17195 -14.06305 -13.15118 -12.73179 -12.58359 -12.36127 -12.26675 -12.07595 -12.01329 -11.53756 -11.27934 -11.11588 -11.06481 -10.90500 -10.59117 -10.57119 -10.28888 -10.14179 -9.98996 -9.90990 -9.62075 -9.12571 -8.93711 -8.66824 -8.29148 -5.93516 -3.97591 3.31643 3.35130 3.40876 3.43675 3.59928 4.28404 4.42927 4.49871 4.58482 4.61033 4.92345 5.08645 5.11716 5.24823 5.31072 5.35700 5.37082 5.41391 5.44052 5.51727 5.59104 5.67193 5.78493 5.84527 5.90192 5.98954 6.00085 6.07725 6.13744 6.22040 6.29055 6.31617 6.40280 6.85506 6.95408 7.55828 7.77632 7.90354 8.00742 8.10566 8.42427 8.86137 9.11319 9.65739 11.17469 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003580 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.187618 B = 7819.991436 C = 8252.031404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.540 6.540 13 N -0.730 5.730 14 C 0.153 3.847 15 H 0.095 0.905 16 C 0.062 3.938 17 O -0.567 6.567 18 C -0.088 4.088 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.116 4.116 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.398 0.602 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.374 0.626 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -23.001 1.118 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.416 6.416 13 N -0.383 5.383 14 C 0.047 3.953 15 H 0.113 0.887 16 C -0.017 4.017 17 O -0.372 6.372 18 C -0.107 4.107 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.232 0.768 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.221 0.779 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.779 -22.706 1.710 23.492 hybrid contribution 0.562 0.789 -0.605 1.142 sum 6.341 -21.917 1.104 22.843 Atomic orbital electron populations 1.70001 1.06048 1.26517 1.50338 1.25027 0.94826 0.99209 0.95358 0.86594 0.79786 0.83534 0.78046 1.20697 1.21246 1.19882 1.21241 0.92937 0.91059 1.51200 0.92628 1.18886 0.93169 0.89394 0.98528 1.21855 1.00690 0.92060 1.02415 1.21550 0.88629 0.85756 0.74160 1.90652 1.14482 1.87712 1.48784 1.46143 1.10073 1.04928 1.77117 1.20977 0.96574 0.83913 0.93829 0.88728 1.22686 0.86791 0.99108 0.93100 1.86450 1.31998 1.92032 1.26729 1.21320 0.99112 0.93788 0.96487 1.21566 0.98249 0.94319 1.00864 1.21498 0.99654 0.97825 0.96422 1.21549 0.99972 0.97239 0.97033 1.21524 0.98347 0.95056 1.00668 1.21593 0.99912 0.98223 0.95605 0.92996 0.95917 0.95865 0.90351 0.90330 0.76761 0.93208 0.92964 0.77935 0.89721 0.91939 0.91773 0.92009 0.92229 0.92355 0.92068 0.92071 0.92115 0.91556 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.92 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 11 C 0.51 10.01 7.79 -10.99 -0.09 9.92 16 12 O -0.54 -12.78 15.64 5.55 0.09 -12.69 16 13 N -0.73 -10.72 4.28 -53.81 -0.23 -10.95 16 14 C 0.15 1.97 1.95 -67.93 -0.13 1.84 16 15 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 16 C 0.06 0.75 6.46 37.16 0.24 0.99 16 17 O -0.57 -6.22 12.67 -35.23 -0.45 -6.67 16 18 C -0.09 -0.90 1.68 -90.62 -0.15 -1.05 16 19 C -0.11 -0.99 4.94 -26.73 -0.13 -1.12 16 20 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -1.18 5.00 -26.73 -0.13 -1.31 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.40 5.04 8.15 -40.82 -0.33 4.71 16 30 H 0.05 0.49 6.76 -51.93 -0.35 0.14 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.37 2.63 9.12 45.56 0.42 3.04 16 33 H 0.08 0.91 7.44 -51.93 -0.39 0.53 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.55 6.63 -51.93 -0.34 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.71 7.20 -51.93 -0.37 0.34 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -34.14 341.48 -8.09 -42.22 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.80 Total: 2.98 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.56 Total: -9.93 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.51 Total: -37.95 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.36 Total: -19.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.14 -8.09 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566771359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.199 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds