Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00290 * 2 1 4 4 H 1.48508 * 109.46879 * 269.99818 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99443 * 3 2 1 6 6 H 1.48494 * 109.47374 * 149.99685 * 3 2 1 7 7 C 1.37876 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46921 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00015 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99969 * 180.27311 * 11 10 9 14 14 C 1.46494 * 120.00096 * 179.72530 * 13 11 10 15 15 H 1.08999 * 109.47239 * 325.00524 * 14 13 11 16 16 C 1.53008 * 109.47228 * 85.00062 * 14 13 11 17 17 O 1.42899 * 109.46914 * 64.57305 * 16 14 13 18 18 C 1.53002 * 109.47569 * 204.99846 * 14 13 11 19 19 C 1.52996 * 109.47594 * 176.11473 * 18 14 13 20 20 C 1.52998 * 109.47243 * 180.02562 * 19 18 14 21 21 C 1.52998 * 109.46962 * 59.99951 * 20 19 18 22 22 C 1.53001 * 109.47571 * 299.99767 * 21 20 19 23 23 C 1.52998 * 109.46787 * 60.00126 * 22 21 20 24 24 H 0.97000 * 119.99509 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47243 * 60.00300 * 9 7 2 26 26 H 1.08993 * 109.47284 * 299.99872 * 9 7 2 27 27 H 1.08992 * 109.47202 * 59.99837 * 10 9 7 28 28 H 1.09001 * 109.46822 * 299.99614 * 10 9 7 29 29 H 0.97000 * 120.00016 * 359.72191 * 13 11 10 30 30 H 1.08997 * 109.47151 * 184.56729 * 16 14 13 31 31 H 1.08996 * 109.47100 * 304.57003 * 16 14 13 32 32 H 0.96704 * 113.99835 * 180.02562 * 17 16 14 33 33 H 1.08995 * 109.47385 * 296.11978 * 18 14 13 34 34 H 1.09000 * 109.47018 * 300.00189 * 19 18 14 35 35 H 1.08996 * 109.47357 * 59.99934 * 19 18 14 36 36 H 1.09000 * 109.46942 * 299.99837 * 20 19 18 37 37 H 1.09002 * 109.47474 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47054 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47385 * 60.00156 * 21 20 19 40 40 H 1.09000 * 109.47084 * 300.00574 * 22 21 20 41 41 H 1.08994 * 109.47548 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47474 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47424 * 59.99792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 8 0.2788 -4.9672 0.0015 13 7 2.1654 -6.1344 0.0092 14 6 1.4329 -7.4030 0.0159 15 1 0.5220 -7.2935 0.6043 16 6 1.0696 -7.7898 -1.4192 17 8 2.2645 -8.0372 -2.1629 18 6 2.3098 -8.4951 0.6319 19 6 1.5114 -9.7967 0.7278 20 6 2.3881 -10.8885 1.3443 21 6 2.8307 -10.4574 2.7440 22 6 3.6292 -9.1558 2.6482 23 6 2.7525 -8.0639 2.0316 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8878 29 1 3.1354 -6.1344 0.0095 30 1 0.4555 -8.6902 -1.4085 31 1 0.5136 -6.9763 -1.8851 32 1 2.1098 -8.2877 -3.0840 33 1 3.1877 -8.6527 0.0054 34 1 0.6336 -9.6391 1.3543 35 1 1.1957 -10.1036 -0.2693 36 1 3.2662 -11.0462 0.7180 37 1 1.8192 -11.8158 1.4131 38 1 3.4549 -11.2354 3.1835 39 1 1.9526 -10.2997 3.3703 40 1 4.5072 -9.3135 2.0219 41 1 3.9448 -8.8489 3.6452 42 1 3.3214 -7.1367 1.9629 43 1 1.8743 -7.9062 2.6578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566771359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = -154.934312 kcal Electronic energy + Delta-G solvation = -21170.226968 eV Core-core repulsion = 18019.493354 eV Total energy + Delta-G solvation = -3150.733614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15331 -39.55995 -37.63257 -35.67676 -35.43239 -33.20448 -32.17880 -31.53377 -29.01635 -27.55286 -24.81347 -23.51528 -23.22382 -21.46470 -21.30887 -20.51310 -18.82790 -18.29532 -17.55084 -17.14396 -16.54694 -16.40508 -16.13278 -15.46553 -15.22258 -14.95390 -14.88609 -14.71327 -14.22523 -14.17811 -13.44157 -13.38878 -13.24212 -13.04523 -12.97944 -12.81555 -12.47735 -12.44006 -11.98248 -11.92519 -11.83371 -11.63673 -11.34701 -11.30113 -11.06194 -10.97560 -10.91292 -10.57184 -10.57113 -9.98010 -8.18217 -6.32324 1.41722 1.44657 1.55685 1.73452 2.25856 2.44988 3.14573 3.39011 3.57760 3.82754 3.87258 4.07218 4.14662 4.28803 4.36036 4.38373 4.48429 4.50239 4.55451 4.61340 4.65054 4.66470 4.74406 4.80017 4.86511 5.04907 5.10551 5.20248 5.28457 5.31439 5.33210 5.41690 5.45967 5.48699 5.58267 5.63122 5.65661 5.85249 6.17820 6.64582 6.85627 6.86318 7.36459 7.38637 8.94474 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003580 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.187618 B = 7819.991436 C = 8252.031404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.044 3.956 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.706 5.706 14 C 0.146 3.854 15 H 0.074 0.926 16 C 0.070 3.930 17 O -0.573 6.573 18 C -0.074 4.074 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.117 4.117 24 H 0.263 0.737 25 H -0.019 1.019 26 H -0.018 1.018 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.412 0.588 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -24.149 1.026 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.470 6.470 13 N -0.358 5.358 14 C 0.041 3.959 15 H 0.092 0.908 16 C -0.009 4.009 17 O -0.380 6.380 18 C -0.093 4.093 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.155 4.155 24 H 0.072 0.928 25 H 0.000 1.000 26 H 0.001 0.999 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.249 0.751 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.243 0.757 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.463 -23.910 1.603 25.414 hybrid contribution -0.273 1.075 -0.593 1.257 sum 8.190 -22.836 1.010 24.281 Atomic orbital electron populations 1.70180 1.08297 1.27801 1.51461 1.26146 0.95748 1.03953 0.94610 0.85311 0.78666 0.77665 0.78537 1.19684 1.21099 1.17929 1.21718 0.93959 0.91669 1.50822 0.90730 1.18668 0.93641 0.92405 0.94640 1.21629 0.99351 0.90457 1.04545 1.21275 0.87825 0.86747 0.74073 1.90639 1.16495 1.88383 1.51503 1.45884 1.10719 1.04342 1.74834 1.21177 0.96269 0.83584 0.94838 0.90825 1.22487 0.87190 0.99133 0.92106 1.86395 1.31303 1.92047 1.28266 1.21225 0.98654 0.93305 0.96140 1.21573 0.98130 0.93845 1.01375 1.21482 0.99680 0.97693 0.96179 1.21561 0.99909 0.97152 0.97200 1.21502 0.98238 0.94757 1.00767 1.21602 0.99644 0.98746 0.95522 0.92846 1.00022 0.99910 0.87989 0.88194 0.75103 0.90636 0.96078 0.75718 0.89378 0.92454 0.91079 0.91538 0.91086 0.91089 0.92565 0.91384 0.91855 0.92234 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.21 13.29 21.45 0.28 -59.93 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.52 4.26 29.85 0.13 2.65 16 10 C -0.12 -5.02 5.64 29.85 0.17 -4.85 16 11 C 0.51 20.52 7.79 87.66 0.68 21.21 16 12 O -0.59 -29.42 15.64 -3.04 -0.05 -29.47 16 13 N -0.71 -20.41 4.28 -442.53 -1.89 -22.30 16 14 C 0.15 3.72 1.95 45.00 0.09 3.80 16 15 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 16 C 0.07 1.62 6.46 71.98 0.46 2.09 16 17 O -0.57 -11.36 12.67 -148.98 -1.89 -13.25 16 18 C -0.07 -1.40 1.68 -10.79 -0.02 -1.42 16 19 C -0.11 -1.76 4.94 30.59 0.15 -1.61 16 20 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 21 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 22 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 23 C -0.12 -2.25 5.00 30.60 0.15 -2.10 16 24 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 25 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 26 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 27 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 28 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.41 9.73 8.15 -92.71 -0.76 8.97 16 30 H 0.08 1.37 6.76 -2.39 -0.02 1.36 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.39 4.61 9.12 -74.05 -0.68 3.93 16 33 H 0.09 1.67 7.44 -2.39 -0.02 1.65 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.03 6.63 -2.39 -0.02 1.02 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.20 7.20 -2.39 -0.02 1.19 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.81 341.48 1.10 -75.71 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -0.44 Total: 18.17 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.06 Total: -15.84 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.61 Total: -82.23 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.93 Total: -42.71 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.81 1.10 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566771359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.228 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds