Wall clock time and date at job start Mon Mar 30 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00120 * 2 1 4 4 H 1.48497 * 109.47076 * 269.99984 * 3 2 1 5 5 H 1.48500 * 109.46887 * 29.99857 * 3 2 1 6 6 H 1.48495 * 109.47144 * 149.99989 * 3 2 1 7 7 C 1.37884 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99626 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99697 * 178.62216 * 10 9 7 12 12 H 1.08994 * 109.47459 * 26.86066 * 11 10 9 13 13 C 1.53003 * 109.47144 * 146.85901 * 11 10 9 14 14 H 1.09000 * 110.27840 * 65.66719 * 13 11 10 15 15 C 1.54947 * 110.39576 * 187.82322 * 13 11 10 16 16 C 1.55305 * 100.94290 * 155.40128 * 15 13 11 17 17 C 1.54384 * 102.25117 * 325.86650 * 16 15 13 18 18 O 1.43228 * 107.59045 * 21.35637 * 17 16 15 19 19 C 1.53000 * 109.47219 * 266.85259 * 11 10 9 20 20 C 1.53002 * 112.85103 * 298.77557 * 19 11 10 21 21 O 1.42898 * 109.47097 * 183.51310 * 20 19 11 22 22 C 1.53781 * 113.61591 * 167.57420 * 19 11 10 23 23 C 1.53957 * 87.01772 * 220.05283 * 22 19 11 24 24 C 1.53777 * 87.11464 * 25.36187 * 23 22 19 25 25 H 0.96994 * 120.00058 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47071 * 59.99724 * 9 7 2 27 27 H 1.09003 * 109.46923 * 300.00148 * 9 7 2 28 28 H 1.00898 * 110.99604 * 302.57170 * 10 9 7 29 29 H 1.08998 * 111.12007 * 273.31749 * 15 13 11 30 30 H 1.08997 * 111.12319 * 37.47857 * 15 13 11 31 31 H 1.09000 * 110.84359 * 207.67592 * 16 15 13 32 32 H 1.08993 * 110.84740 * 84.05735 * 16 15 13 33 33 H 1.09005 * 109.83051 * 261.84542 * 17 16 15 34 34 H 1.09002 * 109.90819 * 140.91774 * 17 16 15 35 35 H 1.08999 * 109.46803 * 303.51460 * 20 19 11 36 36 H 1.09000 * 109.47438 * 63.51293 * 20 19 11 37 37 H 0.96699 * 114.00068 * 179.97438 * 21 20 19 38 38 H 1.09001 * 113.61555 * 334.56936 * 22 19 11 39 39 H 1.09001 * 113.61301 * 105.47581 * 22 19 11 40 40 H 1.09009 * 113.53603 * 270.81133 * 23 22 19 41 41 H 1.09000 * 113.74080 * 139.94705 * 23 22 19 42 42 H 1.08998 * 113.61776 * 220.08921 * 24 23 22 43 43 H 1.08999 * 113.69103 * 89.19512 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5056 -4.9068 0.0324 12 1 0.5182 -4.7962 -0.4157 13 6 2.3098 -5.9433 -0.7549 14 1 3.2615 -6.1380 -0.2605 15 6 1.5010 -7.2567 -0.9013 16 6 2.1416 -7.8562 -2.1828 17 6 2.4686 -6.5926 -3.0074 18 8 2.5305 -5.4870 -2.0990 19 6 1.3585 -5.3702 1.4831 20 6 2.7047 -5.5797 2.1794 21 8 2.4856 -6.0881 3.4968 22 6 0.3847 -6.5476 1.6579 23 6 -0.1088 -5.8449 2.9358 24 6 0.3663 -4.5271 2.3015 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8260 -3.5610 -0.7944 29 1 1.6546 -7.9104 -0.0427 30 1 0.4412 -7.0508 -1.0513 31 1 1.4305 -8.4911 -2.7113 32 1 3.0502 -8.4074 -1.9409 33 1 1.6860 -6.4206 -3.7464 34 1 3.4292 -6.7143 -3.5079 35 1 3.3014 -6.2920 1.6096 36 1 3.2342 -4.6289 2.2402 37 1 3.2976 -6.2455 3.9977 38 1 -0.3705 -6.6097 0.8744 39 1 0.8804 -7.5000 1.8459 40 1 0.4486 -6.1252 3.8297 41 1 -1.1885 -5.8975 3.0764 42 1 0.8472 -3.8508 3.0082 43 1 -0.3929 -4.0347 1.6940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576466548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:43 Heat of formation + Delta-G solvation = -78.207542 kcal Electronic energy + Delta-G solvation = -22383.572744 eV Core-core repulsion = 19236.166253 eV Total energy + Delta-G solvation = -3147.406492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24912 -38.60718 -35.63710 -34.61746 -32.50715 -32.06916 -30.09288 -27.69726 -26.32878 -25.08568 -24.24727 -22.91135 -21.70415 -21.02596 -19.89913 -18.11848 -17.43840 -16.55446 -16.32473 -15.75046 -15.04645 -14.80566 -14.53365 -14.29637 -14.12934 -13.82458 -13.27998 -12.99875 -12.52333 -12.42357 -12.05461 -11.86789 -11.69355 -11.56385 -11.46535 -11.23967 -11.08080 -10.98213 -10.78921 -10.57636 -10.43383 -10.04106 -9.90469 -9.74361 -9.66521 -9.47665 -9.07995 -8.95351 -8.39902 -7.17723 -5.95372 -3.95836 3.36429 3.42076 3.46662 3.89593 4.47789 4.50593 4.52808 4.74531 4.89766 4.90849 5.11578 5.14785 5.23845 5.33997 5.39957 5.43785 5.59581 5.66169 5.71332 5.75785 5.77881 5.83990 5.90813 6.00590 6.03843 6.13771 6.25456 6.30743 6.36170 6.39807 6.46670 6.74812 6.85979 7.02470 7.21839 7.39738 7.56529 7.87415 7.90054 8.23088 8.53519 8.73139 9.13518 9.68098 11.15801 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.006441 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.729926 B = 4345.773058 C = 5426.702713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.193 3.807 10 N -0.680 5.680 11 C 0.108 3.892 12 H 0.050 0.950 13 C 0.076 3.924 14 H 0.073 0.927 15 C -0.148 4.148 16 C -0.157 4.157 17 C 0.052 3.948 18 O -0.376 6.376 19 C -0.059 4.059 20 C 0.105 3.895 21 O -0.570 6.570 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.112 4.112 25 H 0.260 0.740 26 H -0.017 1.017 27 H 0.036 0.964 28 H 0.337 0.663 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.368 0.632 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -17.378 0.694 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.066 3.934 10 N -0.311 5.311 11 C -0.004 4.004 12 H 0.068 0.932 13 C 0.019 3.981 14 H 0.091 0.909 15 C -0.186 4.186 16 C -0.195 4.195 17 C -0.025 4.025 18 O -0.295 6.295 19 C -0.060 4.060 20 C 0.028 3.972 21 O -0.375 6.375 22 C -0.166 4.166 23 C -0.176 4.176 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.001 0.999 27 H 0.054 0.946 28 H 0.155 0.845 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.214 0.786 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.937 -16.945 1.115 17.234 hybrid contribution 0.593 0.688 -0.894 1.274 sum 3.530 -16.257 0.221 16.638 Atomic orbital electron populations 1.69960 1.06013 1.26576 1.51325 1.24965 0.94836 0.99195 0.95580 0.86529 0.79801 0.83293 0.77948 1.20830 1.21343 1.19862 1.21196 0.93451 0.90353 1.49735 0.92147 1.19688 0.90632 0.87199 0.95870 1.60718 1.21892 1.00457 1.48046 1.21511 0.96323 0.90634 0.91893 0.93248 1.23299 0.97994 0.93261 0.83565 0.90910 1.23401 1.00642 0.96865 0.97724 1.23140 1.01317 0.98106 0.96928 1.23059 1.00853 0.85724 0.92852 1.88452 1.93180 1.31626 1.16262 1.21669 0.93464 0.96675 0.94159 1.21810 0.95705 0.97762 0.81913 1.86507 1.35188 1.87848 1.28005 1.23020 0.98434 0.97003 0.98139 1.22962 0.99296 0.97285 0.98105 1.22780 0.97926 0.95750 0.98497 0.93063 0.99912 0.94580 0.84539 0.89701 0.90256 0.90346 0.90829 0.91693 0.91795 0.94547 0.91547 0.78631 0.90974 0.91989 0.88737 0.93043 0.91383 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.71 9.33 -34.44 -0.32 -15.03 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.12 5.11 -4.97 -0.03 5.10 16 10 N -0.68 -14.80 5.93 -107.99 -0.64 -15.44 16 11 C 0.11 1.93 1.53 -67.71 -0.10 1.83 16 12 H 0.05 0.99 7.63 -51.93 -0.40 0.60 16 13 C 0.08 1.15 2.81 -25.70 -0.07 1.08 16 14 H 0.07 1.07 6.38 -51.93 -0.33 0.74 16 15 C -0.15 -1.76 4.87 -24.48 -0.12 -1.88 16 16 C -0.16 -1.59 7.02 -24.78 -0.17 -1.76 16 17 C 0.05 0.64 7.79 37.88 0.30 0.94 16 18 O -0.38 -6.26 10.10 -35.23 -0.36 -6.62 16 19 C -0.06 -0.94 0.65 -153.69 -0.10 -1.04 16 20 C 0.11 1.55 6.10 37.16 0.23 1.78 16 21 O -0.57 -7.49 10.54 -35.23 -0.37 -7.86 16 22 C -0.13 -1.79 4.93 -25.83 -0.13 -1.92 16 23 C -0.14 -2.10 7.54 -25.83 -0.19 -2.29 16 24 C -0.11 -2.03 5.70 -25.92 -0.15 -2.18 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H -0.02 -0.49 8.09 -51.93 -0.42 -0.91 16 27 H 0.04 1.01 5.66 -51.93 -0.29 0.71 16 28 H 0.34 7.49 7.49 -39.29 -0.29 7.19 16 29 H 0.08 0.90 6.80 -51.93 -0.35 0.55 16 30 H 0.08 0.98 7.27 -51.93 -0.38 0.60 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.48 6.46 -51.93 -0.34 0.14 16 36 H 0.07 1.12 7.97 -51.93 -0.41 0.70 16 37 H 0.37 3.21 9.12 45.56 0.42 3.62 16 38 H 0.07 0.98 7.21 -51.93 -0.37 0.61 16 39 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 40 H 0.09 1.43 6.16 -51.92 -0.32 1.11 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 43 H 0.08 1.58 7.11 -51.93 -0.37 1.21 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -31.63 325.23 -8.04 -39.67 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.33 Total: 8.65 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.96 Total: -13.88 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.10 Total: -42.04 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.73 Total: -14.48 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.63 -8.04 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.539 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds